data_7U25
#
_model_server_result.job_id            Rng8kaLP1JI3OdofQfARWA 
_model_server_result.datetime_utc      '2025-02-17 15:49:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7u25 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":703}' 
#
_entry.id    7U25 
#
_exptl.entry_id    7U25 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7U25 
_cell.length_a            179.952 
_cell.length_b            179.952 
_cell.length_c            185.472 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7U25 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        181 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 64 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_544 x,x-y-1,-z-1/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 89.976 -155.843003 -61.824 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 453 A ASP 538 1_555 B MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? 
metalc ? metalc2 A OD1 ASN 480 A ASN 565 1_555 B MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? 
metalc ? metalc3 A O HIS 482 A HIS 567 1_555 B MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? 
metalc ? metalc4 B MG MG . A MG 701 1_555 E O13 TZD . A TZD 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
metalc ? metalc5 B MG MG . A MG 701 1_555 E O23 TZD . A TZD 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 134 n n 
PA O2A FAD sing 135 n n 
PA O5B FAD sing 136 n n 
PA O3P FAD sing 137 n n 
O2A HOA2 FAD sing 138 n n 
O5B C5B FAD sing 139 n n 
C5B C4B FAD sing 140 n n 
C5B H51A FAD sing 141 n n 
C5B H52A FAD sing 142 n n 
C4B O4B FAD sing 143 n n 
C4B C3B FAD sing 144 n n 
C4B H4B FAD sing 145 n n 
O4B C1B FAD sing 146 n n 
C3B O3B FAD sing 147 n n 
C3B C2B FAD sing 148 n n 
C3B H3B FAD sing 149 n n 
O3B HO3A FAD sing 150 n n 
C2B O2B FAD sing 151 n n 
C2B C1B FAD sing 152 n n 
C2B H2B FAD sing 153 n n 
O2B HO2A FAD sing 154 n n 
C1B N9A FAD sing 155 n n 
C1B H1B FAD sing 156 n n 
N9A C8A FAD sing 157 n y 
N9A C4A FAD sing 158 n y 
C8A N7A FAD doub 159 n y 
C8A H8A FAD sing 160 n n 
N7A C5A FAD sing 161 n y 
C5A C6A FAD sing 162 n y 
C5A C4A FAD doub 163 n y 
C6A N6A FAD sing 164 n n 
C6A N1A FAD doub 165 n y 
N6A H61A FAD sing 166 n n 
N6A H62A FAD sing 167 n n 
N1A C2A FAD sing 168 n y 
C2A N3A FAD doub 169 n y 
C2A H2A FAD sing 170 n n 
N3A C4A FAD sing 171 n y 
N1 C2 FAD sing 172 n n 
N1 C10 FAD doub 173 n n 
C2 O2 FAD doub 174 n n 
C2 N3 FAD sing 175 n n 
N3 C4 FAD sing 176 n n 
N3 HN3 FAD sing 177 n n 
C4 O4 FAD doub 178 n n 
C4 C4X FAD sing 179 n n 
C4X N5 FAD doub 180 n n 
C4X C10 FAD sing 181 n n 
N5 C5X FAD sing 182 n n 
C5X C6 FAD doub 183 n y 
C5X C9A FAD sing 184 n y 
C6 C7 FAD sing 185 n y 
C6 H6 FAD sing 186 n n 
C7 C7M FAD sing 187 n n 
C7 C8 FAD doub 188 n y 
C7M HM71 FAD sing 189 n n 
C7M HM72 FAD sing 190 n n 
C7M HM73 FAD sing 191 n n 
C8 C8M FAD sing 192 n n 
C8 C9 FAD sing 193 n y 
C8M HM81 FAD sing 194 n n 
C8M HM82 FAD sing 195 n n 
C8M HM83 FAD sing 196 n n 
C9 C9A FAD doub 197 n y 
C9 H9 FAD sing 198 n n 
C9A N10 FAD sing 199 n n 
N10 C10 FAD sing 200 n n 
N10 C1' FAD sing 201 n n 
C1' C2' FAD sing 202 n n 
C1' "H1'1" FAD sing 203 n n 
C1' "H1'2" FAD sing 204 n n 
C2' O2' FAD sing 205 n n 
C2' C3' FAD sing 206 n n 
C2' H2' FAD sing 207 n n 
O2' HO2' FAD sing 208 n n 
C3' O3' FAD sing 209 n n 
C3' C4' FAD sing 210 n n 
C3' H3' FAD sing 211 n n 
O3' HO3' FAD sing 212 n n 
C4' O4' FAD sing 213 n n 
C4' C5' FAD sing 214 n n 
C4' H4' FAD sing 215 n n 
O4' HO4' FAD sing 216 n n 
C5' O5' FAD sing 217 n n 
C5' "H5'1" FAD sing 218 n n 
C5' "H5'2" FAD sing 219 n n 
O5' P FAD sing 220 n n 
P O1P FAD doub 221 n n 
P O2P FAD sing 222 n n 
P O3P FAD sing 223 n n 
O2P HOP2 FAD sing 224 n n 
#
_atom_sites.entry_id                     7U25 
_atom_sites.fract_transf_matrix[1][1]    0.005557 
_atom_sites.fract_transf_matrix[1][2]    0.003208 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006417 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005392 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 701 701 MG MG . 
C 3 6QL A 1 702 801 6QL 6QL . 
D 4 FAD A 1 703 1201 FAD FAD . 
E 5 TZD A 1 704 1301 TZD TZD . 
F 6 NHE A 1 705 1701 NHE NHE . 
G 7 SO4 A 1 706 1801 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . D 4 58.378 -68.395 -8.677 1 63.22 ? PA FAD 703 A 1 
HETATM 2 O O1A FAD . . . D 4 59.098 -67.108 -8.27 1 52.2 -1 O1A FAD 703 A 1 
HETATM 3 O O2A FAD . . . D 4 58.805 -68.777 -10.077 1 75.03 ? O2A FAD 703 A 1 
HETATM 4 O O5B FAD . . . D 4 56.78 -68.155 -8.657 1 78.59 ? O5B FAD 703 A 1 
HETATM 5 C C5B FAD . . . D 4 56.221 -67.363 -7.577 1 70.07 ? C5B FAD 703 A 1 
HETATM 6 C C4B FAD . . . D 4 55.132 -68.189 -6.907 1 66.48 ? C4B FAD 703 A 1 
HETATM 7 O O4B FAD . . . D 4 54.392 -67.378 -5.988 1 86.36 ? O4B FAD 703 A 1 
HETATM 8 C C3B FAD . . . D 4 54.157 -68.657 -7.932 1 67.17 ? C3B FAD 703 A 1 
HETATM 9 O O3B FAD . . . D 4 53.589 -69.903 -7.531 1 62.51 ? O3B FAD 703 A 1 
HETATM 10 C C2B FAD . . . D 4 53.127 -67.604 -7.947 1 60.95 ? C2B FAD 703 A 1 
HETATM 11 O O2B FAD . . . D 4 51.86 -68.167 -8.318 1 79.31 ? O2B FAD 703 A 1 
HETATM 12 C C1B FAD . . . D 4 53.083 -67.132 -6.559 1 75.34 ? C1B FAD 703 A 1 
HETATM 13 N N9A FAD . . . D 4 52.792 -65.757 -6.489 1 65.27 ? N9A FAD 703 A 1 
HETATM 14 C C8A FAD . . . D 4 53.138 -64.832 -7.374 1 76.83 ? C8A FAD 703 A 1 
HETATM 15 N N7A FAD . . . D 4 52.689 -63.64 -6.967 1 72.37 ? N7A FAD 703 A 1 
HETATM 16 C C5A FAD . . . D 4 52.031 -63.802 -5.773 1 75.65 ? C5A FAD 703 A 1 
HETATM 17 C C6A FAD . . . D 4 51.345 -62.962 -4.844 1 80.63 ? C6A FAD 703 A 1 
HETATM 18 N N6A FAD . . . D 4 51.242 -61.6 -5.09 1 89.37 ? N6A FAD 703 A 1 
HETATM 19 N N1A FAD . . . D 4 50.797 -63.49 -3.726 1 70.02 ? N1A FAD 703 A 1 
HETATM 20 C C2A FAD . . . D 4 50.895 -64.777 -3.495 1 65.96 ? C2A FAD 703 A 1 
HETATM 21 N N3A FAD . . . D 4 51.526 -65.615 -4.33 1 63.3 ? N3A FAD 703 A 1 
HETATM 22 C C4A FAD . . . D 4 52.098 -65.163 -5.465 1 66.95 ? C4A FAD 703 A 1 
HETATM 23 N N1 FAD . . . D 4 66.197 -71.886 -7.325 1 74.34 ? N1 FAD 703 A 1 
HETATM 24 C C2 FAD . . . D 4 66.344 -72.166 -5.936 1 75.91 ? C2 FAD 703 A 1 
HETATM 25 O O2 FAD . . . D 4 65.456 -71.848 -5.164 1 77.51 ? O2 FAD 703 A 1 
HETATM 26 N N3 FAD . . . D 4 67.479 -72.792 -5.464 1 81.76 ? N3 FAD 703 A 1 
HETATM 27 C C4 FAD . . . D 4 68.481 -73.147 -6.353 1 70.96 ? C4 FAD 703 A 1 
HETATM 28 O O4 FAD . . . D 4 69.483 -73.698 -5.945 1 78.06 ? O4 FAD 703 A 1 
HETATM 29 C C4X FAD . . . D 4 68.342 -72.857 -7.836 1 73.29 ? C4X FAD 703 A 1 
HETATM 30 N N5 FAD . . . D 4 69.341 -73.213 -8.735 1 84 ? N5 FAD 703 A 1 
HETATM 31 C C5X FAD . . . D 4 69.272 -72.759 -10.022 1 78.5 ? C5X FAD 703 A 1 
HETATM 32 C C6 FAD . . . D 4 70.379 -72.944 -10.87 1 75.77 ? C6 FAD 703 A 1 
HETATM 33 C C7 FAD . . . D 4 70.329 -72.483 -12.192 1 67.15 ? C7 FAD 703 A 1 
HETATM 34 C C7M FAD . . . D 4 71.541 -72.683 -13.121 1 76.17 ? C7M FAD 703 A 1 
HETATM 35 C C8 FAD . . . D 4 69.176 -71.842 -12.665 1 65.64 ? C8 FAD 703 A 1 
HETATM 36 C C8M FAD . . . D 4 69.133 -71.339 -14.113 1 66.09 ? C8M FAD 703 A 1 
HETATM 37 C C9 FAD . . . D 4 68.072 -71.658 -11.823 1 79.36 ? C9 FAD 703 A 1 
HETATM 38 C C9A FAD . . . D 4 68.122 -72.123 -10.49 1 78.02 ? C9A FAD 703 A 1 
HETATM 39 N N10 FAD . . . D 4 67.043 -71.951 -9.641 1 69.44 ? N10 FAD 703 A 1 
HETATM 40 C C10 FAD . . . D 4 67.199 -72.232 -8.287 1 69.9 ? C10 FAD 703 A 1 
HETATM 41 C C1' FAD . . . D 4 65.878 -71.276 -10.083 1 77.92 ? C1' FAD 703 A 1 
HETATM 42 C C2' FAD . . . D 4 64.663 -72.241 -10.121 1 70.74 ? C2' FAD 703 A 1 
HETATM 43 O O2' FAD . . . D 4 64.63 -72.879 -11.388 1 75.27 ? O2' FAD 703 A 1 
HETATM 44 C C3' FAD . . . D 4 63.311 -71.466 -9.903 1 78.11 ? C3' FAD 703 A 1 
HETATM 45 O O3' FAD . . . D 4 63.396 -70.226 -10.458 1 78.56 ? O3' FAD 703 A 1 
HETATM 46 C C4' FAD . . . D 4 63.019 -71.34 -8.433 1 76.58 ? C4' FAD 703 A 1 
HETATM 47 O O4' FAD . . . D 4 63.426 -72.545 -7.779 1 79.52 ? O4' FAD 703 A 1 
HETATM 48 C C5' FAD . . . D 4 61.546 -71.138 -8.217 1 84.43 ? C5' FAD 703 A 1 
HETATM 49 O O5' FAD . . . D 4 61.319 -69.865 -7.657 1 68.12 ? O5' FAD 703 A 1 
HETATM 50 P P FAD . . . D 4 59.993 -69.645 -6.764 1 58.69 ? P FAD 703 A 1 
HETATM 51 O O1P FAD . . . D 4 59.823 -70.844 -5.818 1 62.3 -1 O1P FAD 703 A 1 
HETATM 52 O O2P FAD . . . D 4 60.123 -68.374 -5.931 1 59.76 ? O2P FAD 703 A 1 
HETATM 53 O O3P FAD . . . D 4 58.72 -69.555 -7.683 1 69.37 ? O3P FAD 703 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           53 
#