data_7U2A # _model_server_result.job_id pDTwgQmXD2ErIWL-sI2knA _model_server_result.datetime_utc '2024-12-21 13:07:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7u2a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 7U2A # _exptl.entry_id 7U2A _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 433.397 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7U2A _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7U2A _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N1 G 1 C G 1 1_555 A N3 C 34 C C 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 G 1 C G 1 1_555 A O2 C 34 C C 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 G 1 C G 1 1_555 A N4 C 34 C C 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 A 2 C A 2 1_555 A N3 U 33 C U 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N6 A 2 C A 2 1_555 A O4 U 33 C U 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N1 G 3 C G 3 1_555 A N3 C 32 C C 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N2 G 3 C G 3 1_555 A O2 C 32 C C 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O6 G 3 C G 3 1_555 A N4 C 32 C C 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N1 A 4 C A 4 1_555 A N3 U 31 C U 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N6 A 4 C A 4 1_555 A O4 U 31 C U 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N1 A 5 C A 5 1_555 A N3 U 30 C U 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N6 A 5 C A 5 1_555 A O4 U 30 C U 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 A 6 C A 6 1_555 A N3 U 29 C U 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N6 A 6 C A 6 1_555 A O4 U 29 C U 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N1 G 7 C G 7 1_555 A N3 C 28 C C 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N2 G 7 C G 7 1_555 A O2 C 28 C C 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O6 G 7 C G 7 1_555 A N4 C 28 C C 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N3 C 10 C C 34 1_555 A N1 G 27 C G 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N4 C 10 C C 34 1_555 A O6 G 27 C G 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O2 C 10 C C 34 1_555 A N2 G 27 C G 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N3 C 11 C C 35 1_555 A N1 G 26 C G 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N4 C 11 C C 35 1_555 A O6 G 26 C G 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A O2 C 11 C C 35 1_555 A N2 G 26 C G 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N1 A 12 C A 36 1_555 A N3 U 25 C U 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N6 A 12 C A 36 1_555 A O4 U 25 C U 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N3 U 13 C U 37 1_555 A N1 A 24 C A 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A O4 U 13 C U 37 1_555 A N6 A 24 C A 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-C PAIR' hydrog28 A O6 G 14 C G 38 1_555 A N4 C 23 C C 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A N3 U 15 C U 39 1_555 A N1 A 22 C A 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A O4 U 15 C U 39 1_555 A N6 A 22 C A 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'C-A MISPAIR' hydrog31 A N3 C 16 C C 40 1_555 A N6 A 21 C A 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C13 H19 N7 O8 S' _chem_comp.formula_weight 433.397 _chem_comp.id SSA _chem_comp.mon_nstd_flag . _chem_comp.name "5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N10 CA SSA sing 403 n n N10 HN11 SSA sing 404 n n N10 HN12 SSA sing 405 n n CA CB SSA sing 406 n n CA C9 SSA sing 407 n n CA HA SSA sing 408 n n CB OG SSA sing 409 n n CB HB1 SSA sing 410 n n CB HB2 SSA sing 411 n n OG HOG SSA sing 412 n n C9 O9 SSA doub 413 n n C9 N8 SSA sing 414 n n N8 S1 SSA sing 415 n n N8 HN8 SSA sing 416 n n S1 O1S SSA doub 417 n n S1 O2S SSA doub 418 n n S1 O5' SSA sing 419 n n O5' C5' SSA sing 420 n n C5' C4' SSA sing 421 n n C5' "H5'1" SSA sing 422 n n C5' "H5'2" SSA sing 423 n n C4' O4' SSA sing 424 n n C4' C3' SSA sing 425 n n C4' H4' SSA sing 426 n n O4' C1' SSA sing 427 n n C3' O3' SSA sing 428 n n C3' C2' SSA sing 429 n n C3' H3' SSA sing 430 n n O3' HO3' SSA sing 431 n n C2' O2' SSA sing 432 n n C2' C1' SSA sing 433 n n C2' H2' SSA sing 434 n n O2' HO2' SSA sing 435 n n C1' N9 SSA sing 436 n n C1' H1' SSA sing 437 n n N9 C8 SSA sing 438 n y N9 C4 SSA sing 439 n y C8 N7 SSA doub 440 n y C8 H8 SSA sing 441 n n N7 C5 SSA sing 442 n y C5 C6 SSA sing 443 n y C5 C4 SSA doub 444 n y C6 N6 SSA sing 445 n n C6 N1 SSA doub 446 n y N6 HN61 SSA sing 447 n n N6 HN62 SSA sing 448 n n N1 C2 SSA sing 449 n y C2 N3 SSA doub 450 n y C2 H2 SSA sing 451 n n N3 C4 SSA sing 452 n y # _atom_sites.entry_id 7U2A _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 SSA A 1 601 423 SSA SSA . E 3 SSA B 1 601 422 SSA SSA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N10 SSA . . . D 3 103.025 109.891 87.56 1 166.39 ? N10 SSA 601 A 1 HETATM 2 C CA SSA . . . D 3 101.546 109.707 87.853 1 163.9 ? CA SSA 601 A 1 HETATM 3 C CB SSA . . . D 3 101.121 108.204 87.524 1 164.65 ? CB SSA 601 A 1 HETATM 4 O OG SSA . . . D 3 100.473 107.647 88.717 1 167.07 ? OG SSA 601 A 1 HETATM 5 C C9 SSA . . . D 3 101.278 109.966 89.404 1 157.05 ? C9 SSA 601 A 1 HETATM 6 O O9 SSA . . . D 3 100.802 109.06 90.101 1 163.62 ? O9 SSA 601 A 1 HETATM 7 N N8 SSA . . . D 3 101.586 111.314 90.028 1 142.4 ? N8 SSA 601 A 1 HETATM 8 S S1 SSA . . . D 3 101.271 111.551 91.772 1 140.78 ? S1 SSA 601 A 1 HETATM 9 O O1S SSA . . . D 3 101.431 110.191 92.555 1 144.59 ? O1S SSA 601 A 1 HETATM 10 O O2S SSA . . . D 3 102.371 112.467 92.438 1 140.16 ? O2S SSA 601 A 1 HETATM 11 O O5' SSA . . . D 3 99.686 112.176 92.006 1 141.06 ? O5' SSA 601 A 1 HETATM 12 C C5' SSA . . . D 3 98.762 111.607 91.098 1 135.71 ? C5' SSA 601 A 1 HETATM 13 C C4' SSA . . . D 3 97.565 111.036 91.802 1 129.61 ? C4' SSA 601 A 1 HETATM 14 O O4' SSA . . . D 3 97.97 109.979 92.705 1 135.46 ? O4' SSA 601 A 1 HETATM 15 C C3' SSA . . . D 3 96.818 111.998 92.699 1 126.9 ? C3' SSA 601 A 1 HETATM 16 O O3' SSA . . . D 3 95.971 112.872 91.977 1 136.81 ? O3' SSA 601 A 1 HETATM 17 C C2' SSA . . . D 3 96.077 111.047 93.612 1 132.84 ? C2' SSA 601 A 1 HETATM 18 O O2' SSA . . . D 3 95.018 110.424 92.916 1 140.29 ? O2' SSA 601 A 1 HETATM 19 C C1' SSA . . . D 3 97.158 110.01 93.859 1 132.07 ? C1' SSA 601 A 1 HETATM 20 N N9 SSA . . . D 3 98.004 110.388 95.002 1 128.1 ? N9 SSA 601 A 1 HETATM 21 C C8 SSA . . . D 3 99.14 111.21 94.988 1 128.03 ? C8 SSA 601 A 1 HETATM 22 N N7 SSA . . . D 3 99.623 111.293 96.302 1 129.32 ? N7 SSA 601 A 1 HETATM 23 C C5 SSA . . . D 3 98.778 110.527 97.117 1 134.57 ? C5 SSA 601 A 1 HETATM 24 C C6 SSA . . . D 3 98.796 110.267 98.521 1 140.42 ? C6 SSA 601 A 1 HETATM 25 N N6 SSA . . . D 3 99.742 110.724 99.611 1 148.84 ? N6 SSA 601 A 1 HETATM 26 N N1 SSA . . . D 3 97.831 109.465 99.082 1 138.84 ? N1 SSA 601 A 1 HETATM 27 C C2 SSA . . . D 3 96.818 108.899 98.275 1 134.53 ? C2 SSA 601 A 1 HETATM 28 N N3 SSA . . . D 3 96.792 109.151 96.89 1 129.74 ? N3 SSA 601 A 1 HETATM 29 C C4 SSA . . . D 3 97.778 109.97 96.321 1 130.18 ? C4 SSA 601 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #