data_7U2B
#
_model_server_result.job_id            YoLp6FUCJqnEE-9ZLbMsIQ 
_model_server_result.datetime_utc      '2024-12-22 06:03:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7u2b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    7U2B 
#
_exptl.entry_id    7U2B 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              433.397 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7U2B 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7U2B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
hydrog WATSON-CRICK hydrog1 A N1 A 2 C A 2 1_555 A N3 U 48 C U 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N6 A 2 C A 2 1_555 A O4 U 48 C U 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A N1 G 3 C G 3 1_555 A N3 C 47 C C 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A N2 G 3 C G 3 1_555 A O2 C 47 C C 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A O6 G 3 C G 3 1_555 A N4 C 47 C C 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A N1 A 4 C A 4 1_555 A N3 U 46 C U 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A N6 A 4 C A 4 1_555 A O4 U 46 C U 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A N1 A 5 C A 5 1_555 A N3 U 45 C U 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A N6 A 5 C A 5 1_555 A O4 U 45 C U 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 A N1 A 6 C A 6 1_555 A N3 U 44 C U 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 A N6 A 6 C A 6 1_555 A O4 U 44 C U 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 A N1 G 7 C G 7 1_555 A N3 C 43 C C 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 A N2 G 7 C G 7 1_555 A O2 C 43 C C 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 A O6 G 7 C G 7 1_555 A N4 C 43 C C 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'C-C MISPAIR' hydrog15 A N4 C 10 C C 10 1_555 A O2 C 23 C C 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'A-C MISPAIR' hydrog16 A N6 A 11 C A 11 1_555 A N3 C 22 C C 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 A N3 C 12 C C 12 1_555 A N1 G 21 C G 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 A N4 C 12 C C 12 1_555 A O6 G 21 C G 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 A O2 C 12 C C 12 1_555 A N2 G 21 C G 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog20 A N1 A 13 C A 13 1_555 A N3 U 20 C U 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog21 A N6 A 13 C A 13 1_555 A O4 U 20 C U 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'A-A MISPAIR' hydrog22 A N3 A 14 C A 14 1_555 A N6 A 19 C A 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog23 A N1 G 15 C G 15 1_555 A N3 C 18 C C 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog24 A N2 G 15 C G 15 1_555 A O2 C 18 C C 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog25 A O6 G 15 C G 15 1_555 A N4 C 18 C C 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog26 A N3 C 25 C C 34 1_555 A N1 G 42 C G 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog27 A N4 C 25 C C 34 1_555 A O6 G 42 C G 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog28 A O2 C 25 C C 34 1_555 A N2 G 42 C G 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'C-G PAIR' hydrog29 A N3 C 26 C C 35 1_555 A N2 G 41 C G 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog30 A N1 A 27 C A 36 1_555 A N3 U 40 C U 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog31 A N6 A 27 C A 36 1_555 A O4 U 40 C U 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog32 A N3 U 28 C U 37 1_555 A N1 A 39 C A 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog33 A O4 U 28 C U 37 1_555 A N6 A 39 C A 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'G-A MISPAIR' hydrog34 A O6 G 29 C G 38 1_555 A N6 A 37 C A 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'G-C PAIR' hydrog35 A O6 G 29 C G 38 1_555 A N4 C 38 C C 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog36 A N3 U 30 C U 39 1_555 A N1 A 37 C A 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog37 A O4 U 30 C U 39 1_555 A N6 A 37 C A 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'C-A MISPAIR' hydrog38 A N3 C 31 C C 40 1_555 A N6 A 36 C A 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C13 H19 N7 O8 S' 
_chem_comp.formula_weight    433.397 
_chem_comp.id                SSA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N10 CA SSA sing 403 n n 
N10 HN11 SSA sing 404 n n 
N10 HN12 SSA sing 405 n n 
CA CB SSA sing 406 n n 
CA C9 SSA sing 407 n n 
CA HA SSA sing 408 n n 
CB OG SSA sing 409 n n 
CB HB1 SSA sing 410 n n 
CB HB2 SSA sing 411 n n 
OG HOG SSA sing 412 n n 
C9 O9 SSA doub 413 n n 
C9 N8 SSA sing 414 n n 
N8 S1 SSA sing 415 n n 
N8 HN8 SSA sing 416 n n 
S1 O1S SSA doub 417 n n 
S1 O2S SSA doub 418 n n 
S1 O5' SSA sing 419 n n 
O5' C5' SSA sing 420 n n 
C5' C4' SSA sing 421 n n 
C5' "H5'1" SSA sing 422 n n 
C5' "H5'2" SSA sing 423 n n 
C4' O4' SSA sing 424 n n 
C4' C3' SSA sing 425 n n 
C4' H4' SSA sing 426 n n 
O4' C1' SSA sing 427 n n 
C3' O3' SSA sing 428 n n 
C3' C2' SSA sing 429 n n 
C3' H3' SSA sing 430 n n 
O3' HO3' SSA sing 431 n n 
C2' O2' SSA sing 432 n n 
C2' C1' SSA sing 433 n n 
C2' H2' SSA sing 434 n n 
O2' HO2' SSA sing 435 n n 
C1' N9 SSA sing 436 n n 
C1' H1' SSA sing 437 n n 
N9 C8 SSA sing 438 n y 
N9 C4 SSA sing 439 n y 
C8 N7 SSA doub 440 n y 
C8 H8 SSA sing 441 n n 
N7 C5 SSA sing 442 n y 
C5 C6 SSA sing 443 n y 
C5 C4 SSA doub 444 n y 
C6 N6 SSA sing 445 n n 
C6 N1 SSA doub 446 n y 
N6 HN61 SSA sing 447 n n 
N6 HN62 SSA sing 448 n n 
N1 C2 SSA sing 449 n y 
C2 N3 SSA doub 450 n y 
C2 H2 SSA sing 451 n n 
N3 C4 SSA sing 452 n y 
#
_atom_sites.entry_id                     7U2B 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 SSA A 1 601 423 SSA SSA . 
E 3 SSA B 1 601 422 SSA SSA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N10 SSA . . . D 3 103.785 110.219 87.212 1 166.39 ? N10 SSA 601 A 1 
HETATM 2 C CA SSA . . . D 3 102.265 110.29 87.259 1 163.9 ? CA SSA 601 A 1 
HETATM 3 C CB SSA . . . D 3 101.632 108.954 86.643 1 164.65 ? CB SSA 601 A 1 
HETATM 4 O OG SSA . . . D 3 100.446 108.588 87.429 1 167.07 ? OG SSA 601 A 1 
HETATM 5 C C9 SSA . . . D 3 101.782 110.411 88.777 1 157.05 ? C9 SSA 601 A 1 
HETATM 6 O O9 SSA . . . D 3 101.179 109.461 89.303 1 163.62 ? O9 SSA 601 A 1 
HETATM 7 N N8 SSA . . . D 3 102.028 111.682 89.57 1 142.4 ? N8 SSA 601 A 1 
HETATM 8 S S1 SSA . . . D 3 101.467 111.771 91.266 1 140.78 ? S1 SSA 601 A 1 
HETATM 9 O O1S SSA . . . D 3 101.464 110.348 91.951 1 144.59 ? O1S SSA 601 A 1 
HETATM 10 O O2S SSA . . . D 3 102.448 112.603 92.185 1 140.16 ? O2S SSA 601 A 1 
HETATM 11 O O5' SSA . . . D 3 99.863 112.394 91.282 1 141.06 ? O5' SSA 601 A 1 
HETATM 12 C C5' SSA . . . D 3 98.98 111.641 90.471 1 135.71 ? C5' SSA 601 A 1 
HETATM 13 C C4' SSA . . . D 3 97.759 111.211 91.238 1 129.61 ? C4' SSA 601 A 1 
HETATM 14 O O4' SSA . . . D 3 98.135 110.223 92.232 1 135.46 ? O4' SSA 601 A 1 
HETATM 15 C C3' SSA . . . D 3 97.066 112.302 92.04 1 126.9 ? C3' SSA 601 A 1 
HETATM 16 O O3' SSA . . . D 3 96.173 113.07 91.254 1 136.81 ? O3' SSA 601 A 1 
HETATM 17 C C2' SSA . . . D 3 96.379 111.51 93.136 1 132.84 ? C2' SSA 601 A 1 
HETATM 18 O O2' SSA . . . D 3 95.228 110.857 92.628 1 140.29 ? O2' SSA 601 A 1 
HETATM 19 C C1' SSA . . . D 3 97.434 110.457 93.432 1 132.07 ? C1' SSA 601 A 1 
HETATM 20 N N9 SSA . . . D 3 98.41 110.909 94.438 1 128.1 ? N9 SSA 601 A 1 
HETATM 21 C C8 SSA . . . D 3 99.475 111.795 94.23 1 128.03 ? C8 SSA 601 A 1 
HETATM 22 N N7 SSA . . . D 3 100.162 111.937 95.44 1 129.32 ? N7 SSA 601 A 1 
HETATM 23 C C5 SSA . . . D 3 99.525 111.13 96.388 1 134.57 ? C5 SSA 601 A 1 
HETATM 24 C C6 SSA . . . D 3 99.812 110.9 97.773 1 140.42 ? C6 SSA 601 A 1 
HETATM 25 N N6 SSA . . . D 3 100.911 111.465 98.656 1 148.84 ? N6 SSA 601 A 1 
HETATM 26 N N1 SSA . . . D 3 99.02 110.042 98.504 1 138.84 ? N1 SSA 601 A 1 
HETATM 27 C C2 SSA . . . D 3 97.923 109.393 97.887 1 134.53 ? C2 SSA 601 A 1 
HETATM 28 N N3 SSA . . . D 3 97.636 109.612 96.52 1 129.74 ? N3 SSA 601 A 1 
HETATM 29 C C4 SSA . . . D 3 98.446 110.489 95.778 1 130.18 ? C4 SSA 601 A 1 
#
_model_server_stats.io_time_ms              47 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           29 
#