data_7U2D
#
_model_server_result.job_id            U0inH-mm21ARWtdBesqG6g 
_model_server_result.datetime_utc      '2024-10-12 04:30:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7u2d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    7U2D 
#
_exptl.entry_id    7U2D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7U2D 
_cell.length_a            101.083 
_cell.length_b            101.083 
_cell.length_c            80.607 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7U2D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4 A CYS 336 1_555 A SG CYS 29 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 47 A CYS 379 1_555 A SG CYS 100 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 A SG CYS 59 A CYS 391 1_555 A SG CYS 193 A CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 A SG CYS 148 A CYS 480 1_555 A SG CYS 156 A CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf6 B SG CYS 151 H CYS 142 1_555 B SG CYS 207 H CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf7 C SG CYS 22 L CYS 23 1_555 C SG CYS 90 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf8 C SG CYS 140 L CYS 134 1_555 C SG CYS 199 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
covale ? covale1 A ND2 ASN 11 A ASN 343 1_555 D C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 257 n n 
C1 O1 NAG sing 258 n n 
C1 O5 NAG sing 259 n n 
C1 H1 NAG sing 260 n n 
C2 C3 NAG sing 261 n n 
C2 N2 NAG sing 262 n n 
C2 H2 NAG sing 263 n n 
C3 C4 NAG sing 264 n n 
C3 O3 NAG sing 265 n n 
C3 H3 NAG sing 266 n n 
C4 C5 NAG sing 267 n n 
C4 O4 NAG sing 268 n n 
C4 H4 NAG sing 269 n n 
C5 C6 NAG sing 270 n n 
C5 O5 NAG sing 271 n n 
C5 H5 NAG sing 272 n n 
C6 O6 NAG sing 273 n n 
C6 H61 NAG sing 274 n n 
C6 H62 NAG sing 275 n n 
C7 C8 NAG sing 276 n n 
C7 N2 NAG sing 277 n n 
C7 O7 NAG doub 278 n n 
C8 H81 NAG sing 279 n n 
C8 H82 NAG sing 280 n n 
C8 H83 NAG sing 281 n n 
N2 HN2 NAG sing 282 n n 
O1 HO1 NAG sing 283 n n 
O3 HO3 NAG sing 284 n n 
O4 HO4 NAG sing 285 n n 
O6 HO6 NAG sing 286 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7U2D 
_atom_sites.fract_transf_matrix[1][1]    0.009893 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009893 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012406 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 NAG A 1 601 601 NAG NAG . 
E 5 SO4 A 1 602 3 SO4 SO4 . 
F 5 SO4 H 1 301 1 SO4 SO4 . 
G 5 SO4 H 1 302 2 SO4 SO4 . 
H 5 SO4 H 1 303 4 SO4 SO4 . 
I 5 SO4 H 1 304 5 SO4 SO4 . 
J 6 CIT L 1 301 1 CIT CIT . 
K 7 HOH A 1 701 13 HOH HOH . 
K 7 HOH A 2 702 31 HOH HOH . 
K 7 HOH A 3 703 24 HOH HOH . 
K 7 HOH A 4 704 29 HOH HOH . 
K 7 HOH A 5 705 14 HOH HOH . 
K 7 HOH A 6 706 6 HOH HOH . 
K 7 HOH A 7 707 10 HOH HOH . 
L 7 HOH H 1 401 32 HOH HOH . 
L 7 HOH H 2 402 1 HOH HOH . 
L 7 HOH H 3 403 3 HOH HOH . 
L 7 HOH H 4 404 26 HOH HOH . 
L 7 HOH H 5 405 9 HOH HOH . 
L 7 HOH H 6 406 4 HOH HOH . 
L 7 HOH H 7 407 20 HOH HOH . 
L 7 HOH H 8 408 27 HOH HOH . 
L 7 HOH H 9 409 16 HOH HOH . 
L 7 HOH H 10 410 23 HOH HOH . 
L 7 HOH H 11 411 7 HOH HOH . 
L 7 HOH H 12 412 17 HOH HOH . 
L 7 HOH H 13 413 25 HOH HOH . 
L 7 HOH H 14 414 15 HOH HOH . 
L 7 HOH H 15 415 28 HOH HOH . 
L 7 HOH H 16 416 35 HOH HOH . 
M 7 HOH L 1 401 5 HOH HOH . 
M 7 HOH L 2 402 19 HOH HOH . 
M 7 HOH L 3 403 8 HOH HOH . 
M 7 HOH L 4 404 12 HOH HOH . 
M 7 HOH L 5 405 21 HOH HOH . 
M 7 HOH L 6 406 22 HOH HOH . 
M 7 HOH L 7 407 34 HOH HOH . 
M 7 HOH L 8 408 11 HOH HOH . 
M 7 HOH L 9 409 2 HOH HOH . 
M 7 HOH L 10 410 18 HOH HOH . 
M 7 HOH L 11 411 33 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . D 4 32.601 27.289 85.239 1 105.06 ? C1 NAG 601 A 1 
HETATM 2 C C2 NAG . . . D 4 33.629 26.164 85.383 1 106.67 ? C2 NAG 601 A 1 
HETATM 3 C C3 NAG . . . D 4 32.971 24.917 85.971 1 119.02 ? C3 NAG 601 A 1 
HETATM 4 C C4 NAG . . . D 4 32.255 25.255 87.271 1 125.62 ? C4 NAG 601 A 1 
HETATM 5 C C5 NAG . . . D 4 31.278 26.405 87.048 1 127.21 ? C5 NAG 601 A 1 
HETATM 6 C C6 NAG . . . D 4 30.61 26.87 88.322 1 119.99 ? C6 NAG 601 A 1 
HETATM 7 C C7 NAG . . . D 4 35.477 25.338 83.992 1 100.31 ? C7 NAG 601 A 1 
HETATM 8 C C8 NAG . . . D 4 35.959 25.085 82.595 1 80.66 ? C8 NAG 601 A 1 
HETATM 9 N N2 NAG . . . D 4 34.25 25.858 84.104 1 110.35 ? N2 NAG 601 A 1 
HETATM 10 O O3 NAG . . . D 4 33.959 23.92 86.208 1 112.34 ? O3 NAG 601 A 1 
HETATM 11 O O4 NAG . . . D 4 31.543 24.118 87.746 1 109.92 ? O4 NAG 601 A 1 
HETATM 12 O O5 NAG . . . D 4 31.976 27.537 86.509 1 124.33 ? O5 NAG 601 A 1 
HETATM 13 O O6 NAG . . . D 4 30.976 28.205 88.643 1 117.84 ? O6 NAG 601 A 1 
HETATM 14 O O7 NAG . . . D 4 36.167 25.082 84.974 1 96.88 ? O7 NAG 601 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#