data_7U2Q
#
_model_server_result.job_id            OhCt6rh2SrK4rsm_WtMiYg 
_model_server_result.datetime_utc      '2024-10-19 04:40:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7u2q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":501}' 
#
_entry.id    7U2Q 
#
_exptl.entry_id    7U2Q 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7U2Q 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7U2Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 10 A CYS 92 1_555 A SG CYS 335 A CYS 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf2 A SG CYS 42 A CYS 124 1_555 A SG CYS 47 A CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
disulf ? disulf3 A SG CYS 102 A CYS 184 1_555 A SG CYS 149 A CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf4 A SG CYS 151 A CYS 233 1_555 A SG CYS 156 A CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 A SG CYS 197 A CYS 279 1_555 A SG CYS 210 A CYS 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf6 A SG CYS 199 A CYS 281 1_555 A SG CYS 208 A CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf7 A SG CYS 236 A CYS 318 1_555 A SG CYS 253 A CYS 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf8 A SG CYS 339 A CYS 421 1_555 A SG CYS 364 A CYS 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf9 B SG CYS 10 B CYS 92 1_555 B SG CYS 335 B CYS 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf10 B SG CYS 42 B CYS 124 1_555 B SG CYS 47 B CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
disulf ? disulf11 B SG CYS 102 B CYS 184 1_555 B SG CYS 149 B CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf12 B SG CYS 151 B CYS 233 1_555 B SG CYS 156 B CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf13 B SG CYS 197 B CYS 279 1_555 B SG CYS 210 B CYS 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf14 B SG CYS 199 B CYS 281 1_555 B SG CYS 208 B CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf15 B SG CYS 236 B CYS 318 1_555 B SG CYS 253 B CYS 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf16 B SG CYS 339 B CYS 421 1_555 B SG CYS 364 B CYS 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf17 C SG CYS 10 C CYS 92 1_555 C SG CYS 335 C CYS 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf18 C SG CYS 42 C CYS 124 1_555 C SG CYS 47 C CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
disulf ? disulf19 C SG CYS 102 C CYS 184 1_555 C SG CYS 149 C CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf20 C SG CYS 151 C CYS 233 1_555 C SG CYS 156 C CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf21 C SG CYS 197 C CYS 279 1_555 C SG CYS 210 C CYS 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf22 C SG CYS 199 C CYS 281 1_555 C SG CYS 208 C CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf23 C SG CYS 236 C CYS 318 1_555 C SG CYS 253 C CYS 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf24 C SG CYS 339 C CYS 421 1_555 C SG CYS 364 C CYS 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf25 D SG CYS 10 D CYS 92 1_555 D SG CYS 335 D CYS 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf26 D SG CYS 42 D CYS 124 1_555 D SG CYS 47 D CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
disulf ? disulf27 D SG CYS 102 D CYS 184 1_555 D SG CYS 149 D CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf28 D SG CYS 151 D CYS 233 1_555 D SG CYS 156 D CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf29 D SG CYS 197 D CYS 279 1_555 D SG CYS 210 D CYS 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf30 D SG CYS 199 D CYS 281 1_555 D SG CYS 208 D CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf31 D SG CYS 236 D CYS 318 1_555 D SG CYS 253 D CYS 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf32 D SG CYS 339 D CYS 421 1_555 D SG CYS 364 D CYS 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 A ND2 ASN 6 A ASN 88 1_555 E C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.502 ? 
covale ? covale2 A ND2 ASN 153 A ASN 235 1_555 F C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale3 B ND2 ASN 6 B ASN 88 1_555 G C1 NAG . B NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.502 ? 
covale ? covale4 B ND2 ASN 153 B ASN 235 1_555 H C1 NAG . B NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale5 C ND2 ASN 6 C ASN 88 1_555 I C1 NAG . C NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.502 ? 
covale ? covale6 C ND2 ASN 153 C ASN 235 1_555 J C1 NAG . C NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale7 D ND2 ASN 6 D ASN 88 1_555 K C1 NAG . D NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.502 ? 
covale ? covale8 D ND2 ASN 153 D ASN 235 1_555 L C1 NAG . D NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7U2Q 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAG A 1 501 501 NAG NAG . 
F 2 NAG A 1 502 601 NAG NAG . 
G 2 NAG B 1 501 501 NAG NAG . 
H 2 NAG B 1 502 601 NAG NAG . 
I 2 NAG C 1 501 501 NAG NAG . 
J 2 NAG C 1 502 601 NAG NAG . 
K 2 NAG D 1 501 501 NAG NAG . 
L 2 NAG D 1 502 601 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . I 2 144.466 115.337 137.796 1 20 ? C1 NAG 501 C 1 
HETATM 2 C C2 NAG . . . I 2 145.021 114.082 138.582 1 20 ? C2 NAG 501 C 1 
HETATM 3 C C3 NAG . . . I 2 143.838 113.374 139.293 1 20 ? C3 NAG 501 C 1 
HETATM 4 C C4 NAG . . . I 2 143.156 114.379 140.258 1 20 ? C4 NAG 501 C 1 
HETATM 5 C C5 NAG . . . I 2 142.658 115.607 139.443 1 20 ? C5 NAG 501 C 1 
HETATM 6 C C6 NAG . . . I 2 142.035 116.672 140.339 1 20 ? C6 NAG 501 C 1 
HETATM 7 C C7 NAG . . . I 2 146.974 113.06 137.501 1 20 ? C7 NAG 501 C 1 
HETATM 8 C C8 NAG . . . I 2 147.576 112.105 136.517 1 20 ? C8 NAG 501 C 1 
HETATM 9 N N2 NAG . . . I 2 145.647 113.15 137.625 1 20 ? N2 NAG 501 C 1 
HETATM 10 O O3 NAG . . . I 2 144.328 112.246 140.034 1 20 ? O3 NAG 501 C 1 
HETATM 11 O O4 NAG . . . I 2 142.058 113.738 140.906 1 20 ? O4 NAG 501 C 1 
HETATM 12 O O5 NAG . . . I 2 143.798 116.23 138.737 1 20 ? O5 NAG 501 C 1 
HETATM 13 O O6 NAG . . . I 2 141.33 117.645 139.578 1 20 ? O6 NAG 501 C 1 
HETATM 14 O O7 NAG . . . I 2 147.728 113.76 138.193 1 20 ? O7 NAG 501 C 1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#