data_7U2V
#
_model_server_result.job_id            N7dHUsCOsYiEGW6NUTXyJw 
_model_server_result.datetime_utc      '2024-11-22 23:58:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7u2v 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    7U2V 
#
_exptl.entry_id    7U2V 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              618.503 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'HEME C' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.19 
_cell.angle_gamma         90 
_cell.entry_id            7U2V 
_cell.length_a            40.846 
_cell.length_b            54.613 
_cell.length_c            71.464 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7U2V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 38 A CYS 38 1_555 C CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.802 ? 
covale ? covale2 A SG CYS 41 A CYS 41 1_555 C CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.809 ? 
covale ? covale3 B SG CYS 38 B CYS 38 1_555 D CAB HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.804 ? 
covale ? covale4 B SG CYS 41 B CYS 41 1_555 D CAC HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.81 ? 
metalc ? metalc1 A NE2 HIS 42 A HIS 42 1_555 C FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc2 C FE HEC . A HEC 201 1_555 E O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc3 B NE2 HIS 42 B HIS 42 1_555 D FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc4 D FE HEC . B HEC 201 1_555 F O HOH . B HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? 
#
_chem_comp.formula           'C34 H34 Fe N4 O4' 
_chem_comp.formula_weight    618.503 
_chem_comp.id                HEC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'HEME C' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE NA HEC sing 129 n n 
FE NB HEC sing 130 n n 
FE NC HEC sing 131 n n 
FE ND HEC sing 132 n n 
CHA C1A HEC doub 133 n n 
CHA C4D HEC sing 134 n n 
CHA HHA HEC sing 135 n n 
CHB C4A HEC doub 136 n n 
CHB C1B HEC sing 137 n n 
CHB HHB HEC sing 138 n n 
CHC C4B HEC doub 139 n n 
CHC C1C HEC sing 140 n n 
CHC HHC HEC sing 141 n n 
CHD C4C HEC doub 142 n n 
CHD C1D HEC sing 143 n n 
CHD HHD HEC sing 144 n n 
NA C1A HEC sing 145 n y 
NA C4A HEC sing 146 n y 
C1A C2A HEC sing 147 n y 
C2A C3A HEC doub 148 n y 
C2A CAA HEC sing 149 n n 
C3A C4A HEC sing 150 n y 
C3A CMA HEC sing 151 n n 
CMA HMA1 HEC sing 152 n n 
CMA HMA2 HEC sing 153 n n 
CMA HMA3 HEC sing 154 n n 
CAA CBA HEC sing 155 n n 
CAA HAA1 HEC sing 156 n n 
CAA HAA2 HEC sing 157 n n 
CBA CGA HEC sing 158 n n 
CBA HBA1 HEC sing 159 n n 
CBA HBA2 HEC sing 160 n n 
CGA O1A HEC doub 161 n n 
CGA O2A HEC sing 162 n n 
O2A H2A HEC sing 163 n n 
NB C1B HEC sing 164 n y 
NB C4B HEC sing 165 n y 
C1B C2B HEC doub 166 n y 
C2B C3B HEC sing 167 n y 
C2B CMB HEC sing 168 n n 
C3B C4B HEC sing 169 n y 
C3B CAB HEC doub 170 e n 
CMB HMB1 HEC sing 171 n n 
CMB HMB2 HEC sing 172 n n 
CMB HMB3 HEC sing 173 n n 
CAB CBB HEC sing 174 n n 
CAB HAB HEC sing 175 n n 
CBB HBB1 HEC sing 176 n n 
CBB HBB2 HEC sing 177 n n 
CBB HBB3 HEC sing 178 n n 
NC C1C HEC sing 179 n y 
NC C4C HEC sing 180 n y 
C1C C2C HEC doub 181 n y 
C2C C3C HEC sing 182 n y 
C2C CMC HEC sing 183 n n 
C3C C4C HEC sing 184 n y 
C3C CAC HEC doub 185 e n 
CMC HMC1 HEC sing 186 n n 
CMC HMC2 HEC sing 187 n n 
CMC HMC3 HEC sing 188 n n 
CAC CBC HEC sing 189 n n 
CAC HAC HEC sing 190 n n 
CBC HBC1 HEC sing 191 n n 
CBC HBC2 HEC sing 192 n n 
CBC HBC3 HEC sing 193 n n 
ND C1D HEC sing 194 n y 
ND C4D HEC sing 195 n y 
C1D C2D HEC doub 196 n y 
C2D C3D HEC sing 197 n y 
C2D CMD HEC sing 198 n n 
C3D C4D HEC doub 199 n y 
C3D CAD HEC sing 200 n n 
CMD HMD1 HEC sing 201 n n 
CMD HMD2 HEC sing 202 n n 
CMD HMD3 HEC sing 203 n n 
CAD CBD HEC sing 204 n n 
CAD HAD1 HEC sing 205 n n 
CAD HAD2 HEC sing 206 n n 
CBD CGD HEC sing 207 n n 
CBD HBD1 HEC sing 208 n n 
CBD HBD2 HEC sing 209 n n 
CGD O1D HEC doub 210 n n 
CGD O2D HEC sing 211 n n 
O2D H2D HEC sing 212 n n 
#
_atom_sites.entry_id                     7U2V 
_atom_sites.fract_transf_matrix[1][1]    0.024482 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005288 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018311 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014316 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEC A 1 201 231 HEC HEM . 
D 2 HEC B 1 201 231 HEC HEM . 
E 3 HOH A 1 301 6 HOH HOH . 
E 3 HOH A 2 302 1 HOH HOH . 
E 3 HOH A 3 303 4 HOH HOH . 
F 3 HOH B 1 301 5 HOH HOH . 
F 3 HOH B 2 302 2 HOH HOH . 
F 3 HOH B 3 303 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HEC . . . D 2 -0.739 28.264 14.256 1 22.8 ? FE HEC 201 B 1 
HETATM 2 C CHA HEC . . . D 2 0.994 25.322 14.057 1 10.02 ? CHA HEC 201 B 1 
HETATM 3 C CHB HEC . . . D 2 0.289 29.09 11.082 1 11.03 ? CHB HEC 201 B 1 
HETATM 4 C CHC HEC . . . D 2 -2.778 31.008 14.304 1 13.12 ? CHC HEC 201 B 1 
HETATM 5 C CHD HEC . . . D 2 -1.405 27.682 17.565 1 10.03 ? CHD HEC 201 B 1 
HETATM 6 N NA HEC . . . D 2 0.417 27.363 12.826 1 15.26 ? NA HEC 201 B 1 
HETATM 7 C C1A HEC . . . D 2 1.06 26.148 12.956 1 11.15 ? C1A HEC 201 B 1 
HETATM 8 C C2A HEC . . . D 2 1.811 25.912 11.739 1 6.35 ? C2A HEC 201 B 1 
HETATM 9 C C3A HEC . . . D 2 1.614 26.95 10.922 1 10.34 ? C3A HEC 201 B 1 
HETATM 10 C C4A HEC . . . D 2 0.733 27.887 11.588 1 14.6 ? C4A HEC 201 B 1 
HETATM 11 C CMA HEC . . . D 2 2.217 27.126 9.512 1 15.14 ? CMA HEC 201 B 1 
HETATM 12 C CAA HEC . . . D 2 2.683 24.674 11.44 1 9.07 ? CAA HEC 201 B 1 
HETATM 13 C CBA HEC . . . D 2 4.152 25.048 11.604 1 8.33 ? CBA HEC 201 B 1 
HETATM 14 C CGA HEC . . . D 2 5.027 23.851 11.333 1 16.22 ? CGA HEC 201 B 1 
HETATM 15 O O1A HEC . . . D 2 6.268 23.976 11.49 1 23.2 ? O1A HEC 201 B 1 
HETATM 16 O O2A HEC . . . D 2 4.488 22.775 10.961 1 17.87 ? O2A HEC 201 B 1 
HETATM 17 N NB HEC . . . D 2 -1.16 29.777 12.941 1 11.61 ? NB HEC 201 B 1 
HETATM 18 C C1B HEC . . . D 2 -0.635 29.924 11.673 1 15.6 ? C1B HEC 201 B 1 
HETATM 19 C C2B HEC . . . D 2 -1.231 31.102 11.074 1 8.39 ? C2B HEC 201 B 1 
HETATM 20 C C3B HEC . . . D 2 -2.064 31.648 11.97 1 9.44 ? C3B HEC 201 B 1 
HETATM 21 C C4B HEC . . . D 2 -2.048 30.81 13.154 1 9.78 ? C4B HEC 201 B 1 
HETATM 22 C CMB HEC . . . D 2 -0.902 31.626 9.66 1 10.05 ? CMB HEC 201 B 1 
HETATM 23 C CAB HEC . . . D 2 -2.961 32.899 11.807 1 11.88 ? CAB HEC 201 B 1 
HETATM 24 C CBB HEC . . . D 2 -3.467 33.232 10.615 1 7.72 ? CBB HEC 201 B 1 
HETATM 25 N NC HEC . . . D 2 -1.911 29.151 15.663 1 10.61 ? NC HEC 201 B 1 
HETATM 26 C C1C HEC . . . D 2 -2.614 30.325 15.489 1 13.7 ? C1C HEC 201 B 1 
HETATM 27 C C2C HEC . . . D 2 -3.154 30.718 16.771 1 15.63 ? C2C HEC 201 B 1 
HETATM 28 C C3C HEC . . . D 2 -2.769 29.809 17.683 1 12.8 ? C3C HEC 201 B 1 
HETATM 29 C C4C HEC . . . D 2 -1.987 28.798 16.996 1 8.69 ? C4C HEC 201 B 1 
HETATM 30 C CMC HEC . . . D 2 -3.997 31.993 16.993 1 12.67 ? CMC HEC 201 B 1 
HETATM 31 C CAC HEC . . . D 2 -3.097 29.775 19.196 1 10.92 ? CAC HEC 201 B 1 
HETATM 32 C CBC HEC . . . D 2 -4.196 30.366 19.679 1 12.25 ? CBC HEC 201 B 1 
HETATM 33 N ND HEC . . . D 2 -0.33 26.749 15.558 1 18.7 ? ND HEC 201 B 1 
HETATM 34 C C1D HEC . . . D 2 -0.612 26.76 16.912 1 11.57 ? C1D HEC 201 B 1 
HETATM 35 C C2D HEC . . . D 2 0.073 25.631 17.51 1 4.91 ? C2D HEC 201 B 1 
HETATM 36 C C3D HEC . . . D 2 0.734 24.983 16.546 1 9.23 ? C3D HEC 201 B 1 
HETATM 37 C C4D HEC . . . D 2 0.494 25.671 15.294 1 11.45 ? C4D HEC 201 B 1 
HETATM 38 C CMD HEC . . . D 2 0.045 25.249 19.004 1 7.23 ? CMD HEC 201 B 1 
HETATM 39 C CAD HEC . . . D 2 1.599 23.718 16.725 1 7.55 ? CAD HEC 201 B 1 
HETATM 40 C CBD HEC . . . D 2 0.701 22.487 16.654 1 6.31 ? CBD HEC 201 B 1 
HETATM 41 C CGD HEC . . . D 2 0.18 22.299 15.252 1 15.77 ? CGD HEC 201 B 1 
HETATM 42 O O1D HEC . . . D 2 1.008 22.234 14.303 1 7.51 ? O1D HEC 201 B 1 
HETATM 43 O O2D HEC . . . D 2 -1.064 22.197 15.087 1 19.22 ? O2D HEC 201 B 1 
HETATM 44 H HHA HEC . . . D 2 1.331 24.408 13.952 1 12.38 ? HHA HEC 201 B 1 
HETATM 45 H HHB HEC . . . D 2 0.665 29.378 10.224 1 13.59 ? HHB HEC 201 B 1 
HETATM 46 H HHC HEC . . . D 2 -3.476 31.696 14.278 1 16.09 ? HHC HEC 201 B 1 
HETATM 47 H HHD HEC . . . D 2 -1.571 27.53 18.519 1 12.38 ? HHD HEC 201 B 1 
HETATM 48 H HMA1 HEC . . . D 2 1.92 27.98 9.133 1 18.52 ? HMA1 HEC 201 B 1 
HETATM 49 H HMA2 HEC . . . D 2 3.195 27.118 9.571 1 18.52 ? HMA2 HEC 201 B 1 
HETATM 50 H HMA3 HEC . . . D 2 1.919 26.392 8.934 1 18.52 ? HMA3 HEC 201 B 1 
HETATM 51 H HAA1 HEC . . . D 2 2.523 24.376 10.531 1 11.24 ? HAA1 HEC 201 B 1 
HETATM 52 H HAA2 HEC . . . D 2 2.458 23.962 12.059 1 11.24 ? HAA2 HEC 201 B 1 
HETATM 53 H HBA1 HEC . . . D 2 4.305 25.358 12.51 1 10.35 ? HBA1 HEC 201 B 1 
HETATM 54 H HBA2 HEC . . . D 2 4.375 25.755 10.978 1 10.35 ? HBA2 HEC 201 B 1 
HETATM 55 H HMB1 HEC . . . D 2 0.06 31.665 9.544 1 12.42 ? HMB1 HEC 201 B 1 
HETATM 56 H HMB2 HEC . . . D 2 -1.283 31.029 8.997 1 12.42 ? HMB2 HEC 201 B 1 
HETATM 57 H HMB3 HEC . . . D 2 -1.277 32.513 9.548 1 12.42 ? HMB3 HEC 201 B 1 
HETATM 58 H HAB HEC . . . D 2 -3.157 33.444 12.573 1 14.61 ? HAB HEC 201 B 1 
HETATM 59 H HBB1 HEC . . . D 2 -4.027 34.019 10.528 1 7.5 ? HBB1 HEC 201 B 1 
HETATM 60 H HBB2 HEC . . . D 2 -3.273 32.687 9.836 1 7.5 ? HBB2 HEC 201 B 1 
HETATM 61 H HMC1 HEC . . . D 2 -3.626 32.722 16.471 1 15.56 ? HMC1 HEC 201 B 1 
HETATM 62 H HMC2 HEC . . . D 2 -4.912 31.829 16.714 1 15.56 ? HMC2 HEC 201 B 1 
HETATM 63 H HMC3 HEC . . . D 2 -3.984 32.23 17.934 1 15.56 ? HMC3 HEC 201 B 1 
HETATM 64 H HAC HEC . . . D 2 -2.502 29.322 19.798 1 13.45 ? HAC HEC 201 B 1 
HETATM 65 H HBC1 HEC . . . D 2 -4.386 30.334 20.629 1 15.06 ? HBC1 HEC 201 B 1 
HETATM 66 H HBC2 HEC . . . D 2 -4.803 30.826 19.078 1 15.06 ? HBC2 HEC 201 B 1 
HETATM 67 H HMD1 HEC . . . D 2 -0.879 25.069 19.278 1 9.03 ? HMD1 HEC 201 B 1 
HETATM 68 H HMD2 HEC . . . D 2 0.589 24.447 19.147 1 9.03 ? HMD2 HEC 201 B 1 
HETATM 69 H HMD3 HEC . . . D 2 0.405 25.987 19.538 1 9.03 ? HMD3 HEC 201 B 1 
HETATM 70 H HAD1 HEC . . . D 2 2.264 23.676 16.02 1 9.42 ? HAD1 HEC 201 B 1 
HETATM 71 H HAD2 HEC . . . D 2 2.043 23.747 17.588 1 9.42 ? HAD2 HEC 201 B 1 
HETATM 72 H HBD1 HEC . . . D 2 1.21 21.704 16.914 1 7.93 ? HBD1 HEC 201 B 1 
HETATM 73 H HBD2 HEC . . . D 2 -0.048 22.602 17.26 1 7.93 ? HBD2 HEC 201 B 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           261 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           73 
#