data_7U2X # _model_server_result.job_id UzK5fg78nHDaeFsjqE0LLw _model_server_result.datetime_utc '2024-11-27 09:24:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7u2x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1606}' # _entry.id 7U2X # _exptl.entry_id 7U2X _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 760.076 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7U2X _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7U2X _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 O N N ? 4 R N N ? 4 S N N ? 4 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 110 A CYS 110 1_555 A SG CYS 142 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 6 E CYS 6 1_555 B SG CYS 26 E CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 C SG CYS 110 B CYS 110 1_555 C SG CYS 142 B CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 D SG CYS 110 C CYS 110 1_555 D SG CYS 142 C CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 E SG CYS 110 D CYS 110 1_555 E SG CYS 142 D CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C42 H82 N O8 P' _chem_comp.formula_weight 760.076 _chem_comp.id POV _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms POPC # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C12 POV sing 472 n n N C13 POV sing 473 n n N C14 POV sing 474 n n N C15 POV sing 475 n n P O11 POV sing 476 n n P O12 POV sing 477 n n P O13 POV sing 478 n n P O14 POV doub 479 n n C1 C2 POV sing 480 n n C1 O11 POV sing 481 n n C1 H1 POV sing 482 n n C1 H1A POV sing 483 n n C2 C3 POV sing 484 n n C2 O21 POV sing 485 n n C2 H2 POV sing 486 n n C3 O31 POV sing 487 n n C3 H3 POV sing 488 n n C3 H3A POV sing 489 n n C210 C211 POV sing 490 n n C210 C29 POV doub 491 z n C210 H210 POV sing 492 n n C310 C311 POV sing 493 n n C310 C39 POV sing 494 n n C310 H310 POV sing 495 n n C310 H31A POV sing 496 n n C11 C12 POV sing 497 n n C11 O12 POV sing 498 n n C11 H11 POV sing 499 n n C11 H11A POV sing 500 n n C211 C212 POV sing 501 n n C211 H211 POV sing 502 n n C211 H21A POV sing 503 n n C311 C312 POV sing 504 n n C311 H311 POV sing 505 n n C311 H31B POV sing 506 n n C12 H12 POV sing 507 n n C12 H12A POV sing 508 n n C212 C213 POV sing 509 n n C212 H212 POV sing 510 n n C212 H21B POV sing 511 n n C312 C313 POV sing 512 n n C312 H312 POV sing 513 n n C312 H31C POV sing 514 n n C13 H13 POV sing 515 n n C13 H13A POV sing 516 n n C13 H13B POV sing 517 n n C213 C214 POV sing 518 n n C213 H213 POV sing 519 n n C213 H21C POV sing 520 n n C313 C314 POV sing 521 n n C313 H313 POV sing 522 n n C313 H31D POV sing 523 n n C14 H14 POV sing 524 n n C14 H14A POV sing 525 n n C14 H14B POV sing 526 n n C214 C215 POV sing 527 n n C214 H214 POV sing 528 n n C214 H21D POV sing 529 n n C314 C315 POV sing 530 n n C314 H314 POV sing 531 n n C314 H31E POV sing 532 n n C15 H15 POV sing 533 n n C15 H15A POV sing 534 n n C15 H15B POV sing 535 n n C215 C216 POV sing 536 n n C215 H215 POV sing 537 n n C215 H21E POV sing 538 n n C315 C316 POV sing 539 n n C315 H315 POV sing 540 n n C315 H31F POV sing 541 n n C216 C217 POV sing 542 n n C216 H216 POV sing 543 n n C216 H21F POV sing 544 n n C316 H316 POV sing 545 n n C316 H31G POV sing 546 n n C316 H31H POV sing 547 n n C217 C218 POV sing 548 n n C217 H217 POV sing 549 n n C217 H21G POV sing 550 n n C218 H218 POV sing 551 n n C218 H21H POV sing 552 n n C218 H21J POV sing 553 n n C21 O21 POV sing 554 n n C21 C22 POV sing 555 n n C21 O22 POV doub 556 n n C22 C23 POV sing 557 n n C22 H22 POV sing 558 n n C22 H22A POV sing 559 n n C23 C24 POV sing 560 n n C23 H23 POV sing 561 n n C23 H23A POV sing 562 n n C24 C25 POV sing 563 n n C24 H24 POV sing 564 n n C24 H24A POV sing 565 n n C25 C26 POV sing 566 n n C25 H25 POV sing 567 n n C25 H25A POV sing 568 n n C26 C27 POV sing 569 n n C26 H26 POV sing 570 n n C26 H26A POV sing 571 n n C27 C28 POV sing 572 n n C27 H27 POV sing 573 n n C27 H27A POV sing 574 n n C28 C29 POV sing 575 n n C28 H28 POV sing 576 n n C28 H28A POV sing 577 n n C29 H29 POV sing 578 n n C31 O31 POV sing 579 n n C31 C32 POV sing 580 n n C31 O32 POV doub 581 n n C32 C33 POV sing 582 n n C32 H32 POV sing 583 n n C32 H32A POV sing 584 n n C33 C34 POV sing 585 n n C33 H33 POV sing 586 n n C33 H33A POV sing 587 n n C34 C35 POV sing 588 n n C34 H34 POV sing 589 n n C34 H34A POV sing 590 n n C35 C36 POV sing 591 n n C35 H35 POV sing 592 n n C35 H35A POV sing 593 n n C36 C37 POV sing 594 n n C36 H36 POV sing 595 n n C36 H36A POV sing 596 n n C37 C38 POV sing 597 n n C37 H37 POV sing 598 n n C37 H37A POV sing 599 n n C38 C39 POV sing 600 n n C38 H38 POV sing 601 n n C38 H38A POV sing 602 n n C39 H39 POV sing 603 n n C39 H39A POV sing 604 n n # _atom_sites.entry_id 7U2X _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 3 PTY A 1 401 506 PTY PTY . G 4 POV A 1 402 505 POV POV . H 3 PTY A 1 403 2010 PTY PTY . I 3 PTY A 1 404 506 PTY PTY . J 3 PTY E 1 1601 2003 PTY PTY . K 3 PTY E 1 1602 2004 PTY PTY . L 3 PTY E 1 1603 2008 PTY PTY . M 5 P5S E 1 1604 2006 P5S P5S . N 6 ATP E 1 1605 2002 ATP ATP . O 4 POV E 1 1606 2007 POV POV . P 7 NAG E 1 1607 1 NAG NAG . Q 3 PTY B 1 401 506 PTY PTY . R 4 POV B 1 402 505 POV POV . S 4 POV C 1 401 505 POV POV . T 3 PTY C 1 402 506 PTY PTY . U 4 POV D 1 401 505 POV POV . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N POV . . . O 4 176.953 163.846 138.197 1 83.74 ? N POV 1606 E 1 HETATM 2 P P POV . . . O 4 173.556 167.538 139.559 1 83.74 ? P POV 1606 E 1 HETATM 3 C C1 POV . . . O 4 173.408 170.054 140.433 1 83.74 ? C1 POV 1606 E 1 HETATM 4 C C2 POV . . . O 4 173.739 170.502 141.861 1 83.74 ? C2 POV 1606 E 1 HETATM 5 C C3 POV . . . O 4 172.825 171.608 142.318 1 83.74 ? C3 POV 1606 E 1 HETATM 6 C C210 POV . . . O 4 182.962 171.404 149.17 1 83.74 ? C210 POV 1606 E 1 HETATM 7 C C11 POV . . . O 4 175.103 165.654 138.516 1 83.74 ? C11 POV 1606 E 1 HETATM 8 O O11 POV . . . O 4 174.182 168.918 140.145 1 83.74 ? O11 POV 1606 E 1 HETATM 9 C C12 POV . . . O 4 176.463 165.097 138.865 1 83.74 ? C12 POV 1606 E 1 HETATM 10 O O12 POV . . . O 4 175.011 166.955 139.036 1 83.74 ? O12 POV 1606 E 1 HETATM 11 C C13 POV . . . O 4 177.059 164.027 136.723 1 83.74 ? C13 POV 1606 E 1 HETATM 12 O O13 POV . . . O 4 172.72 167.888 138.366 1 83.74 ? O13 POV 1606 E 1 HETATM 13 C C14 POV . . . O 4 178.306 163.568 138.752 1 83.74 ? C14 POV 1606 E 1 HETATM 14 O O14 POV . . . O 4 173.045 166.651 140.646 1 83.74 ? O14 POV 1606 E 1 HETATM 15 C C15 POV . . . O 4 176.089 162.679 138.509 1 83.74 ? C15 POV 1606 E 1 HETATM 16 C C21 POV . . . O 4 176.089 170.219 142.287 1 83.74 ? C21 POV 1606 E 1 HETATM 17 O O21 POV . . . O 4 175.073 171.007 141.942 1 83.74 ? O21 POV 1606 E 1 HETATM 18 C C22 POV . . . O 4 177.02 170.897 143.253 1 83.74 ? C22 POV 1606 E 1 HETATM 19 O O22 POV . . . O 4 176.248 169.104 141.866 1 83.74 ? O22 POV 1606 E 1 HETATM 20 C C23 POV . . . O 4 178.267 170.077 143.551 1 83.74 ? C23 POV 1606 E 1 HETATM 21 C C24 POV . . . O 4 179.083 170.671 144.692 1 83.74 ? C24 POV 1606 E 1 HETATM 22 C C25 POV . . . O 4 180.376 169.913 144.969 1 83.74 ? C25 POV 1606 E 1 HETATM 23 C C26 POV . . . O 4 180.988 170.238 146.326 1 83.74 ? C26 POV 1606 E 1 HETATM 24 C C27 POV . . . O 4 180.742 169.188 147.399 1 83.74 ? C27 POV 1606 E 1 HETATM 25 C C28 POV . . . O 4 181.162 169.646 148.798 1 83.74 ? C28 POV 1606 E 1 HETATM 26 C C29 POV . . . O 4 182.561 170.177 148.835 1 83.74 ? C29 POV 1606 E 1 HETATM 27 C C31 POV . . . O 4 173.217 172.345 144.519 1 83.74 ? C31 POV 1606 E 1 HETATM 28 O O31 POV . . . O 4 172.574 171.51 143.713 1 83.74 ? O31 POV 1606 E 1 HETATM 29 C C32 POV . . . O 4 172.272 172.953 145.516 1 83.74 ? C32 POV 1606 E 1 HETATM 30 O O32 POV . . . O 4 174.399 172.566 144.44 1 83.74 ? O32 POV 1606 E 1 HETATM 31 C C33 POV . . . O 4 171.643 171.998 146.512 1 83.74 ? C33 POV 1606 E 1 HETATM 32 C C34 POV . . . O 4 171.31 172.71 147.817 1 83.74 ? C34 POV 1606 E 1 HETATM 33 C C35 POV . . . O 4 172.516 173.192 148.613 1 83.74 ? C35 POV 1606 E 1 HETATM 34 C C36 POV . . . O 4 172.252 173.185 150.114 1 83.74 ? C36 POV 1606 E 1 HETATM 35 C C37 POV . . . O 4 172.713 174.442 150.843 1 83.74 ? C37 POV 1606 E 1 HETATM 36 C C38 POV . . . O 4 174.201 174.43 151.171 1 83.74 ? C38 POV 1606 E 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 36 #