data_7U49 # _model_server_result.job_id '_VO844315lM2LliBaEtnng' _model_server_result.datetime_utc '2024-11-23 01:37:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7u49 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 7U49 # _exptl.entry_id 7U49 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 433.526 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R,4S,5R)-2-[(1R)-1-{[(2Z)-2-(2-amino-1,3-thiazol-4-yl)-2-(methoxyimino)acetyl]amino}-2-oxoethyl]-5-(sulfanylmethyl)-1,3-thiazinane-4-carboxylic acid' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.45 _cell.angle_gamma 90 _cell.entry_id 7U49 _cell.length_a 170.955 _cell.length_b 50.939 _cell.length_c 106.597 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7U49 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1 B,E,H 2 1 C,F,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 73 A SER 70 1_555 D C15 LD0 . A LD0 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? covale ? covale2 B OG SER 73 B SER 70 1_555 E C15 LD0 . B LD0 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 C OG SER 73 C SER 70 1_555 F C15 LD0 . C LD0 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? # _chem_comp.formula 'C14 H19 N5 O5 S3' _chem_comp.formula_weight 433.526 _chem_comp.id LD0 _chem_comp.mon_nstd_flag . _chem_comp.name '(2R,4S,5R)-2-[(1R)-1-{[(2Z)-2-(2-amino-1,3-thiazol-4-yl)-2-(methoxyimino)acetyl]amino}-2-oxoethyl]-5-(sulfanylmethyl)-1,3-thiazinane-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O26 C25 LD0 doub 173 n n C25 O27 LD0 sing 174 n n C25 C19 LD0 sing 175 n n S24 C23 LD0 sing 176 n n C19 C20 LD0 sing 177 n n C19 N18 LD0 sing 178 n n C20 C21 LD0 sing 179 n n C20 C23 LD0 sing 180 n n S22 C21 LD0 sing 181 n n S22 C17 LD0 sing 182 n n N18 C17 LD0 sing 183 n n C17 C14 LD0 sing 184 n n N10 C08 LD0 sing 185 n n C08 S07 LD0 sing 186 n y C08 N09 LD0 doub 187 n y C14 N13 LD0 sing 188 n n C14 C15 LD0 sing 189 n n S07 C06 LD0 sing 190 n y N09 C05 LD0 sing 191 n y N13 C11 LD0 sing 192 n n O16 C15 LD0 doub 193 n n C06 C05 LD0 doub 194 n y C05 C04 LD0 sing 195 n n C11 C04 LD0 sing 196 n n C11 O12 LD0 doub 197 n n C04 N03 LD0 doub 198 z n N03 O02 LD0 sing 199 n n O02 C01 LD0 sing 200 n n C15 H1 LD0 sing 201 n n C17 H2 LD0 sing 202 n n C20 H3 LD0 sing 203 n n C21 H4 LD0 sing 204 n n C21 H5 LD0 sing 205 n n C01 H6 LD0 sing 206 n n C01 H7 LD0 sing 207 n n C01 H8 LD0 sing 208 n n C06 H9 LD0 sing 209 n n C14 H10 LD0 sing 210 n n C19 H11 LD0 sing 211 n n C23 H12 LD0 sing 212 n n C23 H13 LD0 sing 213 n n N10 H14 LD0 sing 214 n n N10 H15 LD0 sing 215 n n N13 H16 LD0 sing 216 n n N18 H17 LD0 sing 217 n n O27 H19 LD0 sing 218 n n S24 H20 LD0 sing 219 n n # _atom_sites.entry_id 7U49 _atom_sites.fract_transf_matrix[1][1] 0.005849 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002537 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019631 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010225 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 LD0 A 1 301 301 LD0 LIG . E 2 LD0 B 1 301 301 LD0 LIG . F 2 LD0 C 1 301 301 LD0 LIG . G 3 HOH A 1 401 54 HOH HOH . G 3 HOH A 2 402 116 HOH HOH . G 3 HOH A 3 403 83 HOH HOH . G 3 HOH A 4 404 46 HOH HOH . G 3 HOH A 5 405 82 HOH HOH . G 3 HOH A 6 406 45 HOH HOH . G 3 HOH A 7 407 51 HOH HOH . G 3 HOH A 8 408 56 HOH HOH . G 3 HOH A 9 409 81 HOH HOH . G 3 HOH A 10 410 16 HOH HOH . G 3 HOH A 11 411 76 HOH HOH . G 3 HOH A 12 412 4 HOH HOH . G 3 HOH A 13 413 78 HOH HOH . G 3 HOH A 14 414 42 HOH HOH . G 3 HOH A 15 415 69 HOH HOH . G 3 HOH A 16 416 37 HOH HOH . G 3 HOH A 17 417 22 HOH HOH . G 3 HOH A 18 418 10 HOH HOH . G 3 HOH A 19 419 70 HOH HOH . G 3 HOH A 20 420 14 HOH HOH . G 3 HOH A 21 421 15 HOH HOH . G 3 HOH A 22 422 102 HOH HOH . G 3 HOH A 23 423 118 HOH HOH . G 3 HOH A 24 424 40 HOH HOH . G 3 HOH A 25 425 43 HOH HOH . G 3 HOH A 26 426 74 HOH HOH . G 3 HOH A 27 427 19 HOH HOH . G 3 HOH A 28 428 28 HOH HOH . G 3 HOH A 29 429 31 HOH HOH . G 3 HOH A 30 430 44 HOH HOH . G 3 HOH A 31 431 1 HOH HOH . G 3 HOH A 32 432 100 HOH HOH . G 3 HOH A 33 433 33 HOH HOH . G 3 HOH A 34 434 48 HOH HOH . G 3 HOH A 35 435 59 HOH HOH . G 3 HOH A 36 436 72 HOH HOH . G 3 HOH A 37 437 39 HOH HOH . G 3 HOH A 38 438 20 HOH HOH . G 3 HOH A 39 439 41 HOH HOH . G 3 HOH A 40 440 84 HOH HOH . G 3 HOH A 41 441 125 HOH HOH . G 3 HOH A 42 442 108 HOH HOH . G 3 HOH A 43 443 128 HOH HOH . G 3 HOH A 44 444 73 HOH HOH . G 3 HOH A 45 445 113 HOH HOH . H 3 HOH B 1 401 13 HOH HOH . H 3 HOH B 2 402 9 HOH HOH . H 3 HOH B 3 403 93 HOH HOH . H 3 HOH B 4 404 80 HOH HOH . H 3 HOH B 5 405 29 HOH HOH . H 3 HOH B 6 406 8 HOH HOH . H 3 HOH B 7 407 126 HOH HOH . H 3 HOH B 8 408 17 HOH HOH . H 3 HOH B 9 409 114 HOH HOH . H 3 HOH B 10 410 61 HOH HOH . H 3 HOH B 11 411 65 HOH HOH . H 3 HOH B 12 412 68 HOH HOH . H 3 HOH B 13 413 18 HOH HOH . H 3 HOH B 14 414 119 HOH HOH . H 3 HOH B 15 415 106 HOH HOH . H 3 HOH B 16 416 11 HOH HOH . H 3 HOH B 17 417 7 HOH HOH . H 3 HOH B 18 418 6 HOH HOH . H 3 HOH B 19 419 58 HOH HOH . H 3 HOH B 20 420 111 HOH HOH . H 3 HOH B 21 421 5 HOH HOH . H 3 HOH B 22 422 55 HOH HOH . H 3 HOH B 23 423 36 HOH HOH . H 3 HOH B 24 424 52 HOH HOH . H 3 HOH B 25 425 57 HOH HOH . H 3 HOH B 26 426 24 HOH HOH . H 3 HOH B 27 427 53 HOH HOH . H 3 HOH B 28 428 63 HOH HOH . H 3 HOH B 29 429 38 HOH HOH . H 3 HOH B 30 430 50 HOH HOH . H 3 HOH B 31 431 21 HOH HOH . H 3 HOH B 32 432 120 HOH HOH . H 3 HOH B 33 433 25 HOH HOH . H 3 HOH B 34 434 121 HOH HOH . H 3 HOH B 35 435 127 HOH HOH . H 3 HOH B 36 436 86 HOH HOH . H 3 HOH B 37 437 92 HOH HOH . H 3 HOH B 38 438 107 HOH HOH . H 3 HOH B 39 439 109 HOH HOH . H 3 HOH B 40 440 124 HOH HOH . H 3 HOH B 41 441 94 HOH HOH . H 3 HOH B 42 442 62 HOH HOH . H 3 HOH B 43 443 115 HOH HOH . H 3 HOH B 44 444 90 HOH HOH . I 3 HOH C 1 401 64 HOH HOH . I 3 HOH C 2 402 66 HOH HOH . I 3 HOH C 3 403 30 HOH HOH . I 3 HOH C 4 404 49 HOH HOH . I 3 HOH C 5 405 2 HOH HOH . I 3 HOH C 6 406 104 HOH HOH . I 3 HOH C 7 407 75 HOH HOH . I 3 HOH C 8 408 67 HOH HOH . I 3 HOH C 9 409 105 HOH HOH . I 3 HOH C 10 410 27 HOH HOH . I 3 HOH C 11 411 23 HOH HOH . I 3 HOH C 12 412 85 HOH HOH . I 3 HOH C 13 413 91 HOH HOH . I 3 HOH C 14 414 35 HOH HOH . I 3 HOH C 15 415 117 HOH HOH . I 3 HOH C 16 416 60 HOH HOH . I 3 HOH C 17 417 87 HOH HOH . I 3 HOH C 18 418 34 HOH HOH . I 3 HOH C 19 419 47 HOH HOH . I 3 HOH C 20 420 112 HOH HOH . I 3 HOH C 21 421 97 HOH HOH . I 3 HOH C 22 422 79 HOH HOH . I 3 HOH C 23 423 96 HOH HOH . I 3 HOH C 24 424 77 HOH HOH . I 3 HOH C 25 425 32 HOH HOH . I 3 HOH C 26 426 110 HOH HOH . I 3 HOH C 27 427 88 HOH HOH . I 3 HOH C 28 428 101 HOH HOH . I 3 HOH C 29 429 71 HOH HOH . I 3 HOH C 30 430 103 HOH HOH . I 3 HOH C 31 431 122 HOH HOH . I 3 HOH C 32 432 99 HOH HOH . I 3 HOH C 33 433 98 HOH HOH . I 3 HOH C 34 434 26 HOH HOH . I 3 HOH C 35 435 95 HOH HOH . I 3 HOH C 36 436 89 HOH HOH . I 3 HOH C 37 437 123 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C15 LD0 . . . D 2 -50.258 14.347 36.787 1 37.82 ? C15 LD0 301 A 1 HETATM 2 C C17 LD0 . . . D 2 -51.805 14.563 34.758 1 39.07 ? C17 LD0 301 A 1 HETATM 3 C C20 LD0 . . . D 2 -53.317 12.316 33.14 1 36.81 ? C20 LD0 301 A 1 HETATM 4 C C21 LD0 . . . D 2 -52.033 12.074 33.821 1 28.46 ? C21 LD0 301 A 1 HETATM 5 C C01 LD0 . . . D 2 -53.331 18.219 40.308 1 42.99 ? C01 LD0 301 A 1 HETATM 6 C C04 LD0 . . . D 2 -54.273 15.619 38.39 1 51.55 ? C04 LD0 301 A 1 HETATM 7 C C05 LD0 . . . D 2 -55.468 15.27 37.468 1 58.09 ? C05 LD0 301 A 1 HETATM 8 C C06 LD0 . . . D 2 -56.67 16.017 37.488 1 61.04 ? C06 LD0 301 A 1 HETATM 9 C C08 LD0 . . . D 2 -56.618 14.089 35.828 1 59.51 ? C08 LD0 301 A 1 HETATM 10 C C11 LD0 . . . D 2 -52.902 14.999 38.117 1 41.39 ? C11 LD0 301 A 1 HETATM 11 C C14 LD0 . . . D 2 -51.601 13.962 36.136 1 37.76 ? C14 LD0 301 A 1 HETATM 12 C C19 LD0 . . . D 2 -53.541 13.958 32.993 1 50.01 ? C19 LD0 301 A 1 HETATM 13 C C23 LD0 . . . D 2 -54.45 11.708 33.947 1 49.39 ? C23 LD0 301 A 1 HETATM 14 C C25 LD0 . . . D 2 -54.951 14.238 32.431 1 61.05 ? C25 LD0 301 A 1 HETATM 15 N N03 LD0 . . . D 2 -54.426 16.446 39.32 1 50.45 ? N03 LD0 301 A 1 HETATM 16 N N09 LD0 . . . D 2 -55.484 14.24 36.55 1 57.39 ? N09 LD0 301 A 1 HETATM 17 N N10 LD0 . . . D 2 -56.895 13.085 34.809 1 56.25 ? N10 LD0 301 A 1 HETATM 18 N N13 LD0 . . . D 2 -52.752 14.552 36.763 1 48.08 ? N13 LD0 301 A 1 HETATM 19 N N18 LD0 . . . D 2 -53.254 14.66 34.444 1 48.92 ? N18 LD0 301 A 1 HETATM 20 O O02 LD0 . . . D 2 -53.378 16.818 40.182 1 47.89 ? O02 LD0 301 A 1 HETATM 21 O O12 LD0 . . . D 2 -52.027 14.898 38.915 1 37.09 ? O12 LD0 301 A 1 HETATM 22 O O16 LD0 . . . D 2 -49.613 15.288 36.409 1 36.24 ? O16 LD0 301 A 1 HETATM 23 O O26 LD0 . . . D 2 -55.226 13.923 31.233 1 59.48 ? O26 LD0 301 A 1 HETATM 24 O O27 LD0 . . . D 2 -55.845 14.781 33.143 1 63.74 -1 O27 LD0 301 A 1 HETATM 25 S S07 LD0 . . . D 2 -57.692 15.304 36.328 1 79.52 ? S07 LD0 301 A 1 HETATM 26 S S22 LD0 . . . D 2 -51.207 13.468 33.725 1 33.45 ? S22 LD0 301 A 1 HETATM 27 S S24 LD0 . . . D 2 -55.668 11.134 32.738 1 62.69 ? S24 LD0 301 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 27 #