data_7U4K # _model_server_result.job_id Znu_qW4JdaQYsvGdoyX5EQ _model_server_result.datetime_utc '2024-11-30 03:40:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7u4k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 7U4K # _exptl.entry_id 7U4K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.5 _cell.angle_gamma 90 _cell.entry_id 7U4K _cell.length_a 82.565 _cell.length_b 69.304 _cell.length_c 32.983 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7U4K _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 88 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 66 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C16 _struct_conn.ptnr2_label_comp_id L9C _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id L9C _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.817 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 7U4K _atom_sites.fract_transf_matrix[1][1] 0.012112 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002686 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014429 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.031055 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 L9C A 1 201 201 L9C ML6 . C 3 EDO A 1 202 202 EDO EDO . D 3 EDO A 1 203 203 EDO EDO . E 4 HOH A 1 301 134 HOH HOH . E 4 HOH A 2 302 138 HOH HOH . E 4 HOH A 3 303 98 HOH HOH . E 4 HOH A 4 304 137 HOH HOH . E 4 HOH A 5 305 48 HOH HOH . E 4 HOH A 6 306 116 HOH HOH . E 4 HOH A 7 307 117 HOH HOH . E 4 HOH A 8 308 80 HOH HOH . E 4 HOH A 9 309 127 HOH HOH . E 4 HOH A 10 310 3 HOH HOH . E 4 HOH A 11 311 122 HOH HOH . E 4 HOH A 12 312 115 HOH HOH . E 4 HOH A 13 313 43 HOH HOH . E 4 HOH A 14 314 97 HOH HOH . E 4 HOH A 15 315 16 HOH HOH . E 4 HOH A 16 316 113 HOH HOH . E 4 HOH A 17 317 40 HOH HOH . E 4 HOH A 18 318 12 HOH HOH . E 4 HOH A 19 319 21 HOH HOH . E 4 HOH A 20 320 6 HOH HOH . E 4 HOH A 21 321 14 HOH HOH . E 4 HOH A 22 322 109 HOH HOH . E 4 HOH A 23 323 60 HOH HOH . E 4 HOH A 24 324 62 HOH HOH . E 4 HOH A 25 325 37 HOH HOH . E 4 HOH A 26 326 39 HOH HOH . E 4 HOH A 27 327 78 HOH HOH . E 4 HOH A 28 328 36 HOH HOH . E 4 HOH A 29 329 23 HOH HOH . E 4 HOH A 30 330 19 HOH HOH . E 4 HOH A 31 331 34 HOH HOH . E 4 HOH A 32 332 24 HOH HOH . E 4 HOH A 33 333 25 HOH HOH . E 4 HOH A 34 334 35 HOH HOH . E 4 HOH A 35 335 58 HOH HOH . E 4 HOH A 36 336 20 HOH HOH . E 4 HOH A 37 337 107 HOH HOH . E 4 HOH A 38 338 69 HOH HOH . E 4 HOH A 39 339 22 HOH HOH . E 4 HOH A 40 340 65 HOH HOH . E 4 HOH A 41 341 7 HOH HOH . E 4 HOH A 42 342 10 HOH HOH . E 4 HOH A 43 343 11 HOH HOH . E 4 HOH A 44 344 9 HOH HOH . E 4 HOH A 45 345 53 HOH HOH . E 4 HOH A 46 346 89 HOH HOH . E 4 HOH A 47 347 81 HOH HOH . E 4 HOH A 48 348 52 HOH HOH . E 4 HOH A 49 349 8 HOH HOH . E 4 HOH A 50 350 54 HOH HOH . E 4 HOH A 51 351 42 HOH HOH . E 4 HOH A 52 352 76 HOH HOH . E 4 HOH A 53 353 13 HOH HOH . E 4 HOH A 54 354 27 HOH HOH . E 4 HOH A 55 355 67 HOH HOH . E 4 HOH A 56 356 4 HOH HOH . E 4 HOH A 57 357 75 HOH HOH . E 4 HOH A 58 358 50 HOH HOH . E 4 HOH A 59 359 73 HOH HOH . E 4 HOH A 60 360 31 HOH HOH . E 4 HOH A 61 361 1 HOH HOH . E 4 HOH A 62 362 136 HOH HOH . E 4 HOH A 63 363 82 HOH HOH . E 4 HOH A 64 364 5 HOH HOH . E 4 HOH A 65 365 95 HOH HOH . E 4 HOH A 66 366 41 HOH HOH . E 4 HOH A 67 367 2 HOH HOH . E 4 HOH A 68 368 74 HOH HOH . E 4 HOH A 69 369 51 HOH HOH . E 4 HOH A 70 370 63 HOH HOH . E 4 HOH A 71 371 120 HOH HOH . E 4 HOH A 72 372 29 HOH HOH . E 4 HOH A 73 373 46 HOH HOH . E 4 HOH A 74 374 32 HOH HOH . E 4 HOH A 75 375 15 HOH HOH . E 4 HOH A 76 376 28 HOH HOH . E 4 HOH A 77 377 77 HOH HOH . E 4 HOH A 78 378 88 HOH HOH . E 4 HOH A 79 379 130 HOH HOH . E 4 HOH A 80 380 45 HOH HOH . E 4 HOH A 81 381 44 HOH HOH . E 4 HOH A 82 382 102 HOH HOH . E 4 HOH A 83 383 71 HOH HOH . E 4 HOH A 84 384 96 HOH HOH . E 4 HOH A 85 385 133 HOH HOH . E 4 HOH A 86 386 17 HOH HOH . E 4 HOH A 87 387 93 HOH HOH . E 4 HOH A 88 388 47 HOH HOH . E 4 HOH A 89 389 119 HOH HOH . E 4 HOH A 90 390 18 HOH HOH . E 4 HOH A 91 391 30 HOH HOH . E 4 HOH A 92 392 110 HOH HOH . E 4 HOH A 93 393 49 HOH HOH . E 4 HOH A 94 394 33 HOH HOH . E 4 HOH A 95 395 106 HOH HOH . E 4 HOH A 96 396 26 HOH HOH . E 4 HOH A 97 397 132 HOH HOH . E 4 HOH A 98 398 83 HOH HOH . E 4 HOH A 99 399 38 HOH HOH . E 4 HOH A 100 400 91 HOH HOH . E 4 HOH A 101 401 55 HOH HOH . E 4 HOH A 102 402 126 HOH HOH . E 4 HOH A 103 403 131 HOH HOH . E 4 HOH A 104 404 112 HOH HOH . E 4 HOH A 105 405 104 HOH HOH . E 4 HOH A 106 406 57 HOH HOH . E 4 HOH A 107 407 84 HOH HOH . E 4 HOH A 108 408 105 HOH HOH . E 4 HOH A 109 409 64 HOH HOH . E 4 HOH A 110 410 86 HOH HOH . E 4 HOH A 111 411 129 HOH HOH . E 4 HOH A 112 412 101 HOH HOH . E 4 HOH A 113 413 103 HOH HOH . E 4 HOH A 114 414 135 HOH HOH . E 4 HOH A 115 415 61 HOH HOH . E 4 HOH A 116 416 125 HOH HOH . E 4 HOH A 117 417 124 HOH HOH . E 4 HOH A 118 418 59 HOH HOH . E 4 HOH A 119 419 121 HOH HOH . E 4 HOH A 120 420 92 HOH HOH . E 4 HOH A 121 421 118 HOH HOH . E 4 HOH A 122 422 94 HOH HOH . E 4 HOH A 123 423 85 HOH HOH . E 4 HOH A 124 424 111 HOH HOH . E 4 HOH A 125 425 99 HOH HOH . E 4 HOH A 126 426 108 HOH HOH . E 4 HOH A 127 427 114 HOH HOH . E 4 HOH A 128 428 66 HOH HOH . E 4 HOH A 129 429 79 HOH HOH . E 4 HOH A 130 430 123 HOH HOH . E 4 HOH A 131 431 100 HOH HOH . E 4 HOH A 132 432 72 HOH HOH . E 4 HOH A 133 433 70 HOH HOH . E 4 HOH A 134 434 56 HOH HOH . E 4 HOH A 135 435 87 HOH HOH . E 4 HOH A 136 436 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 3 10.666 8.671 19.6 1 42.7 ? C1 EDO 202 A 1 HETATM 2 O O1 EDO . . . C 3 10.474 9.945 18.966 1 41.1 ? O1 EDO 202 A 1 HETATM 3 C C2 EDO . . . C 3 10.822 8.864 21.104 1 53.27 ? C2 EDO 202 A 1 HETATM 4 O O2 EDO . . . C 3 12.174 9.236 21.408 1 58.87 ? O2 EDO 202 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 209 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #