data_7U5A
#
_model_server_result.job_id            0A_fR39NFES_9jiC9jEOuQ 
_model_server_result.datetime_utc      '2024-11-06 22:38:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7u5a 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":400}' 
#
_entry.id    7U5A 
#
_exptl.entry_id    7U5A 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              409.394 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-amino-5-({[(1S,4S,5R)-4,5-dihydroxycyclopent-2-en-1-yl]amino}methyl)-7-beta-D-ribofuranosyl-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7U5A 
_cell.length_a            106.401 
_cell.length_b            106.401 
_cell.length_c            159.643 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7U5A 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,F 1 1 
B,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C17 H23 N5 O7' 
_chem_comp.formula_weight    409.394 
_chem_comp.id                QEO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-amino-5-({[(1S,4S,5R)-4,5-dihydroxycyclopent-2-en-1-yl]amino}methyl)-7-beta-D-ribofuranosyl-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O2' C2' QEO sing 285 n n 
C2' C3' QEO sing 286 n n 
C2' C1' QEO sing 287 n n 
O3' C3' QEO sing 288 n n 
C3' C4' QEO sing 289 n n 
C1' N2 QEO sing 290 n n 
C1' O4' QEO sing 291 n n 
O5' C5' QEO sing 292 n n 
C8 N2 QEO sing 293 n y 
C8 C7 QEO doub 294 n y 
C4' C5' QEO sing 295 n n 
C4' O4' QEO sing 296 n n 
N2 C10 QEO sing 297 n y 
C7 C6 QEO sing 298 n n 
C7 C9 QEO sing 299 n y 
C6 N1 QEO sing 300 n n 
C10 C9 QEO doub 301 n y 
C10 N3 QEO sing 302 n n 
N1 C1 QEO sing 303 n n 
C3 C1 QEO sing 304 n n 
C3 C5 QEO doub 305 n n 
C9 C11 QEO sing 306 n n 
N3 C12 QEO doub 307 n n 
C1 C2 QEO sing 308 n n 
C5 C4 QEO sing 309 n n 
C11 N4 QEO sing 310 n n 
C11 O3 QEO doub 311 n n 
C12 N4 QEO sing 312 n n 
C12 N5 QEO sing 313 n n 
C2 O1 QEO sing 314 n n 
C2 C4 QEO sing 315 n n 
C4 O2 QEO sing 316 n n 
O5' H1 QEO sing 317 n n 
C5' H2 QEO sing 318 n n 
C5' H3 QEO sing 319 n n 
C4' H4 QEO sing 320 n n 
C3' H5 QEO sing 321 n n 
O3' H6 QEO sing 322 n n 
C2' H7 QEO sing 323 n n 
O2' H8 QEO sing 324 n n 
C1' H9 QEO sing 325 n n 
N5 H10 QEO sing 326 n n 
N5 H11 QEO sing 327 n n 
N4 H12 QEO sing 328 n n 
C8 H13 QEO sing 329 n n 
C6 H14 QEO sing 330 n n 
C6 H15 QEO sing 331 n n 
N1 H16 QEO sing 332 n n 
C1 H18 QEO sing 333 n n 
C2 H19 QEO sing 334 n n 
O1 H20 QEO sing 335 n n 
C3 H21 QEO sing 336 n n 
C5 H23 QEO sing 337 n n 
C4 H25 QEO sing 338 n n 
O2 H26 QEO sing 339 n n 
#
_atom_sites.entry_id                     7U5A 
_atom_sites.fract_transf_matrix[1][1]    0.009398 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009398 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006264 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 QEO A 1 400 400 QEO QEZ . 
D 3 MLI A 1 401 401 MLI MLI . 
E 2 QEO B 1 400 400 QEO QEZ . 
F 4 HOH A 1 501 150 HOH HOH . 
F 4 HOH A 2 502 187 HOH HOH . 
F 4 HOH A 3 503 153 HOH HOH . 
F 4 HOH A 4 504 165 HOH HOH . 
F 4 HOH A 5 505 5 HOH HOH . 
F 4 HOH A 6 506 162 HOH HOH . 
F 4 HOH A 7 507 18 HOH HOH . 
F 4 HOH A 8 508 52 HOH HOH . 
F 4 HOH A 9 509 37 HOH HOH . 
F 4 HOH A 10 510 20 HOH HOH . 
F 4 HOH A 11 511 59 HOH HOH . 
F 4 HOH A 12 512 148 HOH HOH . 
F 4 HOH A 13 513 41 HOH HOH . 
F 4 HOH A 14 514 60 HOH HOH . 
F 4 HOH A 15 515 190 HOH HOH . 
F 4 HOH A 16 516 99 HOH HOH . 
F 4 HOH A 17 517 173 HOH HOH . 
F 4 HOH A 18 518 65 HOH HOH . 
F 4 HOH A 19 519 113 HOH HOH . 
F 4 HOH A 20 520 164 HOH HOH . 
F 4 HOH A 21 521 25 HOH HOH . 
F 4 HOH A 22 522 188 HOH HOH . 
F 4 HOH A 23 523 92 HOH HOH . 
F 4 HOH A 24 524 62 HOH HOH . 
F 4 HOH A 25 525 50 HOH HOH . 
F 4 HOH A 26 526 71 HOH HOH . 
F 4 HOH A 27 527 109 HOH HOH . 
F 4 HOH A 28 528 7 HOH HOH . 
F 4 HOH A 29 529 67 HOH HOH . 
F 4 HOH A 30 530 74 HOH HOH . 
F 4 HOH A 31 531 64 HOH HOH . 
F 4 HOH A 32 532 170 HOH HOH . 
F 4 HOH A 33 533 57 HOH HOH . 
F 4 HOH A 34 534 112 HOH HOH . 
F 4 HOH A 35 535 75 HOH HOH . 
F 4 HOH A 36 536 120 HOH HOH . 
F 4 HOH A 37 537 66 HOH HOH . 
F 4 HOH A 38 538 42 HOH HOH . 
F 4 HOH A 39 539 124 HOH HOH . 
F 4 HOH A 40 540 19 HOH HOH . 
F 4 HOH A 41 541 35 HOH HOH . 
F 4 HOH A 42 542 184 HOH HOH . 
F 4 HOH A 43 543 115 HOH HOH . 
F 4 HOH A 44 544 63 HOH HOH . 
F 4 HOH A 45 545 51 HOH HOH . 
F 4 HOH A 46 546 58 HOH HOH . 
F 4 HOH A 47 547 17 HOH HOH . 
F 4 HOH A 48 548 12 HOH HOH . 
F 4 HOH A 49 549 174 HOH HOH . 
F 4 HOH A 50 550 43 HOH HOH . 
F 4 HOH A 51 551 49 HOH HOH . 
F 4 HOH A 52 552 126 HOH HOH . 
F 4 HOH A 53 553 168 HOH HOH . 
F 4 HOH A 54 554 163 HOH HOH . 
F 4 HOH A 55 555 118 HOH HOH . 
F 4 HOH A 56 556 114 HOH HOH . 
F 4 HOH A 57 557 93 HOH HOH . 
F 4 HOH A 58 558 151 HOH HOH . 
F 4 HOH A 59 559 125 HOH HOH . 
F 4 HOH A 60 560 23 HOH HOH . 
F 4 HOH A 61 561 133 HOH HOH . 
F 4 HOH A 62 562 44 HOH HOH . 
F 4 HOH A 63 563 81 HOH HOH . 
F 4 HOH A 64 564 110 HOH HOH . 
F 4 HOH A 65 565 98 HOH HOH . 
F 4 HOH A 66 566 119 HOH HOH . 
F 4 HOH A 67 567 97 HOH HOH . 
F 4 HOH A 68 568 183 HOH HOH . 
F 4 HOH A 69 569 24 HOH HOH . 
F 4 HOH A 70 570 158 HOH HOH . 
F 4 HOH A 71 571 175 HOH HOH . 
F 4 HOH A 72 572 1 HOH HOH . 
F 4 HOH A 73 573 189 HOH HOH . 
F 4 HOH A 74 574 94 HOH HOH . 
F 4 HOH A 75 575 156 HOH HOH . 
F 4 HOH A 76 576 169 HOH HOH . 
F 4 HOH A 77 577 22 HOH HOH . 
F 4 HOH A 78 578 91 HOH HOH . 
F 4 HOH A 79 579 3 HOH HOH . 
F 4 HOH A 80 580 149 HOH HOH . 
F 4 HOH A 81 581 159 HOH HOH . 
F 4 HOH A 82 582 171 HOH HOH . 
F 4 HOH A 83 583 4 HOH HOH . 
F 4 HOH A 84 584 95 HOH HOH . 
F 4 HOH A 85 585 172 HOH HOH . 
G 4 HOH B 1 501 182 HOH HOH . 
G 4 HOH B 2 502 135 HOH HOH . 
G 4 HOH B 3 503 128 HOH HOH . 
G 4 HOH B 4 504 160 HOH HOH . 
G 4 HOH B 5 505 27 HOH HOH . 
G 4 HOH B 6 506 32 HOH HOH . 
G 4 HOH B 7 507 154 HOH HOH . 
G 4 HOH B 8 508 104 HOH HOH . 
G 4 HOH B 9 509 186 HOH HOH . 
G 4 HOH B 10 510 54 HOH HOH . 
G 4 HOH B 11 511 136 HOH HOH . 
G 4 HOH B 12 512 31 HOH HOH . 
G 4 HOH B 13 513 68 HOH HOH . 
G 4 HOH B 14 514 105 HOH HOH . 
G 4 HOH B 15 515 145 HOH HOH . 
G 4 HOH B 16 516 185 HOH HOH . 
G 4 HOH B 17 517 82 HOH HOH . 
G 4 HOH B 18 518 152 HOH HOH . 
G 4 HOH B 19 519 30 HOH HOH . 
G 4 HOH B 20 520 69 HOH HOH . 
G 4 HOH B 21 521 16 HOH HOH . 
G 4 HOH B 22 522 180 HOH HOH . 
G 4 HOH B 23 523 48 HOH HOH . 
G 4 HOH B 24 524 80 HOH HOH . 
G 4 HOH B 25 525 178 HOH HOH . 
G 4 HOH B 26 526 26 HOH HOH . 
G 4 HOH B 27 527 73 HOH HOH . 
G 4 HOH B 28 528 138 HOH HOH . 
G 4 HOH B 29 529 13 HOH HOH . 
G 4 HOH B 30 530 56 HOH HOH . 
G 4 HOH B 31 531 8 HOH HOH . 
G 4 HOH B 32 532 103 HOH HOH . 
G 4 HOH B 33 533 140 HOH HOH . 
G 4 HOH B 34 534 61 HOH HOH . 
G 4 HOH B 35 535 84 HOH HOH . 
G 4 HOH B 36 536 47 HOH HOH . 
G 4 HOH B 37 537 72 HOH HOH . 
G 4 HOH B 38 538 116 HOH HOH . 
G 4 HOH B 39 539 9 HOH HOH . 
G 4 HOH B 40 540 11 HOH HOH . 
G 4 HOH B 41 541 79 HOH HOH . 
G 4 HOH B 42 542 101 HOH HOH . 
G 4 HOH B 43 543 45 HOH HOH . 
G 4 HOH B 44 544 76 HOH HOH . 
G 4 HOH B 45 545 134 HOH HOH . 
G 4 HOH B 46 546 10 HOH HOH . 
G 4 HOH B 47 547 100 HOH HOH . 
G 4 HOH B 48 548 29 HOH HOH . 
G 4 HOH B 49 549 55 HOH HOH . 
G 4 HOH B 50 550 15 HOH HOH . 
G 4 HOH B 51 551 87 HOH HOH . 
G 4 HOH B 52 552 21 HOH HOH . 
G 4 HOH B 53 553 123 HOH HOH . 
G 4 HOH B 54 554 70 HOH HOH . 
G 4 HOH B 55 555 78 HOH HOH . 
G 4 HOH B 56 556 107 HOH HOH . 
G 4 HOH B 57 557 142 HOH HOH . 
G 4 HOH B 58 558 90 HOH HOH . 
G 4 HOH B 59 559 143 HOH HOH . 
G 4 HOH B 60 560 6 HOH HOH . 
G 4 HOH B 61 561 39 HOH HOH . 
G 4 HOH B 62 562 46 HOH HOH . 
G 4 HOH B 63 563 108 HOH HOH . 
G 4 HOH B 64 564 167 HOH HOH . 
G 4 HOH B 65 565 36 HOH HOH . 
G 4 HOH B 66 566 86 HOH HOH . 
G 4 HOH B 67 567 89 HOH HOH . 
G 4 HOH B 68 568 122 HOH HOH . 
G 4 HOH B 69 569 38 HOH HOH . 
G 4 HOH B 70 570 130 HOH HOH . 
G 4 HOH B 71 571 161 HOH HOH . 
G 4 HOH B 72 572 14 HOH HOH . 
G 4 HOH B 73 573 157 HOH HOH . 
G 4 HOH B 74 574 96 HOH HOH . 
G 4 HOH B 75 575 117 HOH HOH . 
G 4 HOH B 76 576 88 HOH HOH . 
G 4 HOH B 77 577 139 HOH HOH . 
G 4 HOH B 78 578 146 HOH HOH . 
G 4 HOH B 79 579 77 HOH HOH . 
G 4 HOH B 80 580 33 HOH HOH . 
G 4 HOH B 81 581 166 HOH HOH . 
G 4 HOH B 82 582 83 HOH HOH . 
G 4 HOH B 83 583 53 HOH HOH . 
G 4 HOH B 84 584 191 HOH HOH . 
G 4 HOH B 85 585 2 HOH HOH . 
G 4 HOH B 86 586 147 HOH HOH . 
G 4 HOH B 87 587 181 HOH HOH . 
G 4 HOH B 88 588 28 HOH HOH . 
G 4 HOH B 89 589 179 HOH HOH . 
G 4 HOH B 90 590 85 HOH HOH . 
G 4 HOH B 91 591 111 HOH HOH . 
G 4 HOH B 92 592 144 HOH HOH . 
G 4 HOH B 93 593 106 HOH HOH . 
G 4 HOH B 94 594 102 HOH HOH . 
G 4 HOH B 95 595 132 HOH HOH . 
G 4 HOH B 96 596 176 HOH HOH . 
G 4 HOH B 97 597 129 HOH HOH . 
G 4 HOH B 98 598 177 HOH HOH . 
G 4 HOH B 99 599 40 HOH HOH . 
G 4 HOH B 100 600 34 HOH HOH . 
G 4 HOH B 101 601 141 HOH HOH . 
G 4 HOH B 102 602 155 HOH HOH . 
G 4 HOH B 103 603 137 HOH HOH . 
G 4 HOH B 104 604 131 HOH HOH . 
G 4 HOH B 105 605 121 HOH HOH . 
G 4 HOH B 106 606 127 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O5' QEO . . . E 2 32.512 2.705 47.373 1 57.53 ? O5' QEO 400 B 1 
HETATM 2 C C5' QEO . . . E 2 32.198 2.517 45.998 1 54.03 ? C5' QEO 400 B 1 
HETATM 3 C C4' QEO . . . E 2 30.945 3.258 45.59 1 51.63 ? C4' QEO 400 B 1 
HETATM 4 C C3' QEO . . . E 2 30.805 4.673 46.164 1 52.6 ? C3' QEO 400 B 1 
HETATM 5 O O3' QEO . . . E 2 30.385 5.558 45.136 1 55.12 ? O3' QEO 400 B 1 
HETATM 6 C C2' QEO . . . E 2 29.721 4.565 47.237 1 54.11 ? C2' QEO 400 B 1 
HETATM 7 O O2' QEO . . . E 2 28.947 5.746 47.241 1 64.62 ? O2' QEO 400 B 1 
HETATM 8 O O4' QEO . . . E 2 29.78 2.524 46.039 1 45.64 ? O4' QEO 400 B 1 
HETATM 9 C C1' QEO . . . E 2 28.911 3.35 46.786 1 50.79 ? C1' QEO 400 B 1 
HETATM 10 N N2 QEO . . . E 2 28.382 2.494 47.843 1 51.26 ? N2 QEO 400 B 1 
HETATM 11 C C10 QEO . . . E 2 29.124 1.859 48.807 1 49.58 ? C10 QEO 400 B 1 
HETATM 12 N N3 QEO . . . E 2 30.468 1.955 49.002 1 45.19 ? N3 QEO 400 B 1 
HETATM 13 C C12 QEO . . . E 2 30.945 1.249 50.03 1 48.25 ? C12 QEO 400 B 1 
HETATM 14 N N5 QEO . . . E 2 32.259 1.277 50.305 1 50.44 ? N5 QEO 400 B 1 
HETATM 15 N N4 QEO . . . E 2 30.157 0.472 50.843 1 47.97 ? N4 QEO 400 B 1 
HETATM 16 C C11 QEO . . . E 2 28.785 0.341 50.676 1 47.21 ? C11 QEO 400 B 1 
HETATM 17 O O3 QEO . . . E 2 28.127 -0.383 51.445 1 47.45 ? O3 QEO 400 B 1 
HETATM 18 C C9 QEO . . . E 2 28.256 1.095 49.594 1 48.9 ? C9 QEO 400 B 1 
HETATM 19 C C8 QEO . . . E 2 27.058 2.111 47.993 1 53.8 ? C8 QEO 400 B 1 
HETATM 20 C C7 QEO . . . E 2 26.94 1.262 49.058 1 52.61 ? C7 QEO 400 B 1 
HETATM 21 C C6 QEO . . . E 2 25.691 0.633 49.587 1 53.99 ? C6 QEO 400 B 1 
HETATM 22 N N1 QEO . . . E 2 25.84 -0.772 49.974 1 54.79 ? N1 QEO 400 B 1 
HETATM 23 C C1 QEO . . . E 2 24.572 -1.318 50.435 1 63.98 ? C1 QEO 400 B 1 
HETATM 24 C C2 QEO . . . E 2 24.165 -1.001 51.878 1 68.77 ? C2 QEO 400 B 1 
HETATM 25 O O1 QEO . . . E 2 23.529 0.265 51.938 1 74.13 ? O1 QEO 400 B 1 
HETATM 26 C C3 QEO . . . E 2 24.563 -2.828 50.454 1 67.53 ? C3 QEO 400 B 1 
HETATM 27 C C5 QEO . . . E 2 23.741 -3.267 51.391 1 76.69 ? C5 QEO 400 B 1 
HETATM 28 C C4 QEO . . . E 2 23.175 -2.116 52.19 1 79.3 ? C4 QEO 400 B 1 
HETATM 29 O O2 QEO . . . E 2 21.836 -1.806 51.819 1 86.72 ? O2 QEO 400 B 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          18 
_model_server_stats.element_count           29 
#