data_7U5P # _model_server_result.job_id HDAxRmXysAzbXCFTKQCObA _model_server_result.datetime_utc '2024-10-20 00:51:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7u5p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":201}' # _entry.id 7U5P # _exptl.entry_id 7U5P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7U5P _cell.length_a 82.61 _cell.length_b 82.54 _cell.length_c 151.335 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7U5P _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 ? dimeric 2 author_defined_assembly 3 ? dimeric 2 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I,J,Q 1 1 B,F,K,L 2 1 C,G,M,N,R 3 1 D,H,O,P 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 30 A CYS 30 1_555 A SG CYS 60 A CYS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf2 A SG CYS 50 A CYS 50 1_555 A SG CYS 78 A CYS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 85 A CYS 85 1_555 A SG CYS 104 A CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 91 A CYS 91 1_555 A SG CYS 103 A CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf5 A SG CYS 105 A CYS 105 1_555 A SG CYS 110 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 B SG CYS 30 C CYS 30 1_555 B SG CYS 60 C CYS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf7 B SG CYS 50 C CYS 50 1_555 B SG CYS 78 C CYS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 B SG CYS 85 C CYS 85 1_555 B SG CYS 104 C CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 B SG CYS 91 C CYS 91 1_555 B SG CYS 103 C CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf10 B SG CYS 105 C CYS 105 1_555 B SG CYS 110 C CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf11 C SG CYS 30 E CYS 30 1_555 C SG CYS 60 E CYS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf12 C SG CYS 50 E CYS 50 1_555 C SG CYS 78 E CYS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf13 C SG CYS 85 E CYS 85 1_555 C SG CYS 104 E CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf14 C SG CYS 91 E CYS 91 1_555 C SG CYS 103 E CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf15 C SG CYS 105 E CYS 105 1_555 C SG CYS 110 E CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf16 D SG CYS 30 G CYS 30 1_555 D SG CYS 60 G CYS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf17 D SG CYS 50 G CYS 50 1_555 D SG CYS 78 G CYS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf18 D SG CYS 85 G CYS 85 1_555 D SG CYS 104 G CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf19 D SG CYS 91 G CYS 91 1_555 D SG CYS 103 G CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf20 D SG CYS 105 G CYS 105 1_555 D SG CYS 110 G CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf21 E SG CYS 4 B CYS 314 1_555 E SG CYS 12 B CYS 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf22 E SG CYS 11 B CYS 321 1_555 E SG CYS 81 B CYS 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf23 E SG CYS 40 B CYS 350 1_555 E SG CYS 113 B CYS 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf24 E SG CYS 44 B CYS 354 1_555 E SG CYS 115 B CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf25 E SG CYS 80 B CYS 390 1_555 H SG CYS 80 H CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf26 F SG CYS 4 D CYS 314 1_555 F SG CYS 12 D CYS 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf27 F SG CYS 11 D CYS 321 1_555 F SG CYS 81 D CYS 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf28 F SG CYS 40 D CYS 350 1_555 F SG CYS 113 D CYS 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf29 F SG CYS 44 D CYS 354 1_555 F SG CYS 115 D CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf30 F SG CYS 80 D CYS 390 1_555 G SG CYS 80 F CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf31 G SG CYS 4 F CYS 314 1_555 G SG CYS 12 F CYS 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf32 G SG CYS 11 F CYS 321 1_555 G SG CYS 81 F CYS 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf33 G SG CYS 40 F CYS 350 1_555 G SG CYS 113 F CYS 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf34 G SG CYS 44 F CYS 354 1_555 G SG CYS 115 F CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf35 H SG CYS 4 H CYS 314 1_555 H SG CYS 12 H CYS 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf36 H SG CYS 11 H CYS 321 1_555 H SG CYS 81 H CYS 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf37 H SG CYS 40 H CYS 350 1_555 H SG CYS 113 H CYS 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf38 H SG CYS 44 H CYS 354 1_555 H SG CYS 115 H CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 43 A ASN 43 1_555 I C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 A ND2 ASN 66 A ASN 66 1_555 J C1 NAG . A NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale3 B ND2 ASN 43 C ASN 43 1_555 K C1 NAG . C NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale4 B ND2 ASN 66 C ASN 66 1_555 L C1 NAG . C NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 C ND2 ASN 43 E ASN 43 1_555 M C1 NAG . E NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale6 C ND2 ASN 66 E ASN 66 1_555 N C1 NAG . E NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale7 D ND2 ASN 43 G ASN 43 1_555 O C1 NAG . G NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7U5P _atom_sites.fract_transf_matrix[1][1] 0.012105 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012115 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006608 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 NAG A 1 201 20 NAG NAG . J 3 NAG A 1 202 21 NAG NAG . K 3 NAG C 1 201 20 NAG NAG . L 3 NAG C 1 202 21 NAG NAG . M 3 NAG E 1 201 20 NAG NAG . N 3 NAG E 1 202 21 NAG NAG . O 3 NAG G 1 201 20 NAG NAG . P 3 NAG G 1 202 21 NAG NAG . Q 4 HOH A 1 301 2 HOH HOH . R 4 HOH E 1 301 3 HOH HOH . R 4 HOH E 2 302 4 HOH HOH . R 4 HOH E 3 303 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . O 3 -10.165 21.724 3.962 1 94.66 ? C1 NAG 201 G 1 HETATM 2 C C2 NAG . . . O 3 -9.802 21.651 2.477 1 100.79 ? C2 NAG 201 G 1 HETATM 3 C C3 NAG . . . O 3 -8.748 22.702 2.137 1 107.6 ? C3 NAG 201 G 1 HETATM 4 C C4 NAG . . . O 3 -9.21 24.083 2.583 1 110.21 ? C4 NAG 201 G 1 HETATM 5 C C5 NAG . . . O 3 -9.576 24.056 4.063 1 99.87 ? C5 NAG 201 G 1 HETATM 6 C C6 NAG . . . O 3 -10.136 25.367 4.564 1 90.81 ? C6 NAG 201 G 1 HETATM 7 C C7 NAG . . . O 3 -10.07 19.421 1.48 1 116.29 ? C7 NAG 201 G 1 HETATM 8 C C8 NAG . . . O 3 -9.415 18.1 1.208 1 90.96 ? C8 NAG 201 G 1 HETATM 9 N N2 NAG . . . O 3 -9.325 20.322 2.128 1 115.67 ? N2 NAG 201 G 1 HETATM 10 O O3 NAG . . . O 3 -8.513 22.698 0.733 1 112.83 ? O3 NAG 201 G 1 HETATM 11 O O4 NAG . . . O 3 -8.175 25.036 2.37 1 113.58 ? O4 NAG 201 G 1 HETATM 12 O O5 NAG . . . O 3 -10.581 23.059 4.294 1 103.65 ? O5 NAG 201 G 1 HETATM 13 O O6 NAG . . . O 3 -11.019 25.953 3.617 1 97.34 ? O6 NAG 201 G 1 HETATM 14 O O7 NAG . . . O 3 -11.221 19.662 1.128 1 126.06 ? O7 NAG 201 G 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #