data_7U61
#
_model_server_result.job_id            DtYvrEmDLBDgYUFaA0e_7A 
_model_server_result.datetime_utc      '2024-11-26 07:25:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7u61 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    7U61 
#
_exptl.entry_id    7U61 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              162.232 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (S)-3-(1-METHYLPYRROLIDIN-2-YL)PYRIDINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.66 
_cell.angle_gamma         90 
_cell.entry_id            7U61 
_cell.length_a            114.762 
_cell.length_b            71.326 
_cell.length_c            57.344 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7U61 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 149 H CYS 140 1_555 A SG CYS 204 H CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf3 B SG CYS 22 L CYS 23 1_555 B SG CYS 90 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 B SG CYS 137 L CYS 134 1_555 B SG CYS 196 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
#
_chem_comp.formula           'C10 H14 N2' 
_chem_comp.formula_weight    162.232 
_chem_comp.id                NCT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (S)-3-(1-METHYLPYRROLIDIN-2-YL)PYRIDINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '(S)-(-)-NICOTINE;3-[(2S)-1-METHYL-2-PYRROLIDINYL] PYRIDINE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C1 NCT doub 237 n y 
N1 C5 NCT sing 238 n y 
C1 C2 NCT sing 239 n y 
C1 HC1 NCT sing 240 n n 
C2 C3 NCT doub 241 n y 
C2 C6 NCT sing 242 n n 
C3 C4 NCT sing 243 n y 
C3 HC3 NCT sing 244 n n 
C4 C5 NCT doub 245 n y 
C4 HC4 NCT sing 246 n n 
C5 HC5 NCT sing 247 n n 
N2 C6 NCT sing 248 n n 
N2 C9 NCT sing 249 n n 
N2 C10 NCT sing 250 n n 
C6 C7 NCT sing 251 n n 
C6 HC6 NCT sing 252 n n 
C7 C8 NCT sing 253 n n 
C7 HC71 NCT sing 254 n n 
C7 HC72 NCT sing 255 n n 
C8 C9 NCT sing 256 n n 
C8 HC81 NCT sing 257 n n 
C8 HC82 NCT sing 258 n n 
C9 HC91 NCT sing 259 n n 
C9 HC92 NCT sing 260 n n 
C10 H101 NCT sing 261 n n 
C10 H102 NCT sing 262 n n 
C10 H103 NCT sing 263 n n 
#
_atom_sites.entry_id                     7U61 
_atom_sites.fract_transf_matrix[1][1]    0.008714 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002774 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01402 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018301 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NCT H 1 301 1 NCT NCT . 
D 4 SO4 H 1 302 5 SO4 SO4 . 
E 4 SO4 L 1 301 2 SO4 SO4 . 
F 4 SO4 L 1 302 4 SO4 SO4 . 
G 5 HOH H 1 401 63 HOH HOH . 
G 5 HOH H 2 402 88 HOH HOH . 
G 5 HOH H 3 403 1 HOH HOH . 
G 5 HOH H 4 404 29 HOH HOH . 
G 5 HOH H 5 405 44 HOH HOH . 
G 5 HOH H 6 406 6 HOH HOH . 
G 5 HOH H 7 407 32 HOH HOH . 
G 5 HOH H 8 408 62 HOH HOH . 
G 5 HOH H 9 409 60 HOH HOH . 
G 5 HOH H 10 410 41 HOH HOH . 
G 5 HOH H 11 411 18 HOH HOH . 
G 5 HOH H 12 412 19 HOH HOH . 
G 5 HOH H 13 413 15 HOH HOH . 
G 5 HOH H 14 414 71 HOH HOH . 
G 5 HOH H 15 415 12 HOH HOH . 
G 5 HOH H 16 416 5 HOH HOH . 
G 5 HOH H 17 417 9 HOH HOH . 
G 5 HOH H 18 418 50 HOH HOH . 
G 5 HOH H 19 419 67 HOH HOH . 
G 5 HOH H 20 420 90 HOH HOH . 
G 5 HOH H 21 421 74 HOH HOH . 
G 5 HOH H 22 422 24 HOH HOH . 
G 5 HOH H 23 423 66 HOH HOH . 
G 5 HOH H 24 424 75 HOH HOH . 
G 5 HOH H 25 425 26 HOH HOH . 
G 5 HOH H 26 426 31 HOH HOH . 
G 5 HOH H 27 427 42 HOH HOH . 
G 5 HOH H 28 428 48 HOH HOH . 
G 5 HOH H 29 429 25 HOH HOH . 
G 5 HOH H 30 430 58 HOH HOH . 
G 5 HOH H 31 431 84 HOH HOH . 
G 5 HOH H 32 432 54 HOH HOH . 
G 5 HOH H 33 433 87 HOH HOH . 
G 5 HOH H 34 434 45 HOH HOH . 
G 5 HOH H 35 435 46 HOH HOH . 
G 5 HOH H 36 436 39 HOH HOH . 
H 5 HOH L 1 401 10 HOH HOH . 
H 5 HOH L 2 402 83 HOH HOH . 
H 5 HOH L 3 403 72 HOH HOH . 
H 5 HOH L 4 404 7 HOH HOH . 
H 5 HOH L 5 405 78 HOH HOH . 
H 5 HOH L 6 406 11 HOH HOH . 
H 5 HOH L 7 407 27 HOH HOH . 
H 5 HOH L 8 408 13 HOH HOH . 
H 5 HOH L 9 409 43 HOH HOH . 
H 5 HOH L 10 410 4 HOH HOH . 
H 5 HOH L 11 411 38 HOH HOH . 
H 5 HOH L 12 412 77 HOH HOH . 
H 5 HOH L 13 413 52 HOH HOH . 
H 5 HOH L 14 414 21 HOH HOH . 
H 5 HOH L 15 415 28 HOH HOH . 
H 5 HOH L 16 416 8 HOH HOH . 
H 5 HOH L 17 417 17 HOH HOH . 
H 5 HOH L 18 418 22 HOH HOH . 
H 5 HOH L 19 419 65 HOH HOH . 
H 5 HOH L 20 420 34 HOH HOH . 
H 5 HOH L 21 421 59 HOH HOH . 
H 5 HOH L 22 422 91 HOH HOH . 
H 5 HOH L 23 423 86 HOH HOH . 
H 5 HOH L 24 424 92 HOH HOH . 
H 5 HOH L 25 425 56 HOH HOH . 
H 5 HOH L 26 426 36 HOH HOH . 
H 5 HOH L 27 427 2 HOH HOH . 
H 5 HOH L 28 428 20 HOH HOH . 
H 5 HOH L 29 429 81 HOH HOH . 
H 5 HOH L 30 430 3 HOH HOH . 
H 5 HOH L 31 431 57 HOH HOH . 
H 5 HOH L 32 432 16 HOH HOH . 
H 5 HOH L 33 433 14 HOH HOH . 
H 5 HOH L 34 434 37 HOH HOH . 
H 5 HOH L 35 435 53 HOH HOH . 
H 5 HOH L 36 436 68 HOH HOH . 
H 5 HOH L 37 437 23 HOH HOH . 
H 5 HOH L 38 438 40 HOH HOH . 
H 5 HOH L 39 439 30 HOH HOH . 
H 5 HOH L 40 440 33 HOH HOH . 
H 5 HOH L 41 441 69 HOH HOH . 
H 5 HOH L 42 442 47 HOH HOH . 
H 5 HOH L 43 443 61 HOH HOH . 
H 5 HOH L 44 444 51 HOH HOH . 
H 5 HOH L 45 445 55 HOH HOH . 
H 5 HOH L 46 446 35 HOH HOH . 
H 5 HOH L 47 447 82 HOH HOH . 
H 5 HOH L 48 448 80 HOH HOH . 
H 5 HOH L 49 449 93 HOH HOH . 
H 5 HOH L 50 450 76 HOH HOH . 
H 5 HOH L 51 451 79 HOH HOH . 
H 5 HOH L 52 452 70 HOH HOH . 
H 5 HOH L 53 453 64 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 NCT . . . C 3 -7.506 -33.254 5.757 1 44.67 ? N1 NCT 301 H 1 
HETATM 2 C C1 NCT . . . C 3 -6.662 -33.799 4.857 1 47.25 ? C1 NCT 301 H 1 
HETATM 3 C C2 NCT . . . C 3 -7.104 -34.515 3.732 1 49.06 ? C2 NCT 301 H 1 
HETATM 4 C C3 NCT . . . C 3 -8.467 -34.683 3.539 1 43.9 ? C3 NCT 301 H 1 
HETATM 5 C C4 NCT . . . C 3 -9.345 -34.13 4.461 1 40.74 ? C4 NCT 301 H 1 
HETATM 6 C C5 NCT . . . C 3 -8.824 -33.427 5.546 1 40.67 ? C5 NCT 301 H 1 
HETATM 7 N N2 NCT . . . C 3 -6.005 -34.329 1.5 1 47.17 ? N2 NCT 301 H 1 
HETATM 8 C C6 NCT . . . C 3 -6.071 -35.069 2.813 1 47.56 ? C6 NCT 301 H 1 
HETATM 9 C C7 NCT . . . C 3 -4.647 -34.923 3.379 1 54.58 ? C7 NCT 301 H 1 
HETATM 10 C C8 NCT . . . C 3 -3.749 -34.814 2.149 1 66.32 ? C8 NCT 301 H 1 
HETATM 11 C C9 NCT . . . C 3 -4.683 -34.694 0.938 1 60.35 ? C9 NCT 301 H 1 
HETATM 12 C C10 NCT . . . C 3 -6.216 -32.89 1.649 1 40.74 ? C10 NCT 301 H 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           12 
#