data_7U6A # _model_server_result.job_id UQY8-BJTO2VTIHJs0WLhow _model_server_result.datetime_utc '2024-11-27 18:57:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7u6a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 7U6A # _exptl.entry_id 7U6A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 262.327 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-hydroxy-4-({[(thiophen-3-yl)methyl]amino}methyl)benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7U6A _cell.length_a 80.748 _cell.length_b 80.748 _cell.length_c 248.919 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7U6A _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 543 A CYS 543 1_555 A SG CYS 543 A CYS 543 5_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc1 A O ASP 172 A ASP 172 1_555 D K K . A K 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.825 ? metalc ? metalc2 A OD2 ASP 172 A ASP 172 1_555 D K K . A K 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc3 A O ASP 174 A ASP 174 1_555 D K K . A K 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc4 A OD2 ASP 174 A ASP 174 1_555 F ZN ZN . A ZN 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc5 A O HIS 176 A HIS 176 1_555 D K K . A K 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.724 ? metalc ? metalc6 A ND1 HIS 176 A HIS 176 1_555 F ZN ZN . A ZN 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc7 A O PHE 185 A PHE 185 1_555 E K K . A K 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc8 A O ASP 188 A ASP 188 1_555 E K K . A K 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc9 A O VAL 191 A VAL 191 1_555 E K K . A K 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc10 A OG SER 195 A SER 195 1_555 D K K . A K 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.918 ? metalc ? metalc11 A O TRP 196 A TRP 196 1_555 D K K . A K 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc12 A O PHE 224 A PHE 224 1_555 E K K . A K 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.288 ? metalc ? metalc13 A OD2 ASP 267 A ASP 267 1_555 F ZN ZN . A ZN 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc14 B N17 LSL . A LSL 701 1_555 F ZN ZN . A ZN 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc15 B O16 LSL . A LSL 701 1_555 F ZN ZN . A ZN 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc16 B O18 LSL . A LSL 701 1_555 F ZN ZN . A ZN 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc17 E K K . A K 704 1_555 J O HOH . A HOH 877 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc18 E K K . A K 704 1_555 J O HOH . A HOH 931 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? # _chem_comp.formula 'C13 H14 N2 O2 S' _chem_comp.formula_weight 262.327 _chem_comp.id LSL _chem_comp.mon_nstd_flag . _chem_comp.name N-hydroxy-4-({[(thiophen-3-yl)methyl]amino}methyl)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O16 C01 LSL doub 203 n n C15 C14 LSL doub 204 n y C15 C02 LSL sing 205 n y C14 C05 LSL sing 206 n y C01 C02 LSL sing 207 n n C01 N17 LSL sing 208 n n O18 N17 LSL sing 209 n n C02 C03 LSL doub 210 n y C05 C06 LSL sing 211 n n C05 C04 LSL doub 212 n y N07 C08 LSL sing 213 n n N07 C06 LSL sing 214 n n C08 C09 LSL sing 215 n n C03 C04 LSL sing 216 n y C09 C10 LSL doub 217 n y C09 C13 LSL sing 218 n y C10 S11 LSL sing 219 n y C13 C12 LSL doub 220 n y S11 C12 LSL sing 221 n y C10 H1 LSL sing 222 n n C13 H2 LSL sing 223 n n C15 H3 LSL sing 224 n n C03 H4 LSL sing 225 n n C04 H5 LSL sing 226 n n C06 H6 LSL sing 227 n n C06 H7 LSL sing 228 n n C08 H8 LSL sing 229 n n C08 H9 LSL sing 230 n n C12 H10 LSL sing 231 n n C14 H11 LSL sing 232 n n N07 H12 LSL sing 233 n n N17 H14 LSL sing 234 n n O18 H15 LSL sing 235 n n # _atom_sites.entry_id 7U6A _atom_sites.fract_transf_matrix[1][1] 0.012384 _atom_sites.fract_transf_matrix[1][2] 0.00715 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0143 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004017 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LSL A 1 701 701 LSL LIG . C 3 EDO A 1 702 801 EDO EDO . D 4 K A 1 703 1 K K . E 4 K A 1 704 2 K K . F 5 ZN A 1 705 1 ZN ZN . G 6 PO4 A 1 706 1 PO4 PO4 . H 6 PO4 A 1 707 2 PO4 PO4 . I 6 PO4 A 1 708 3 PO4 PO4 . J 7 HOH A 1 801 111 HOH HOH . J 7 HOH A 2 802 90 HOH HOH . J 7 HOH A 3 803 65 HOH HOH . J 7 HOH A 4 804 28 HOH HOH . J 7 HOH A 5 805 89 HOH HOH . J 7 HOH A 6 806 138 HOH HOH . J 7 HOH A 7 807 105 HOH HOH . J 7 HOH A 8 808 66 HOH HOH . J 7 HOH A 9 809 16 HOH HOH . J 7 HOH A 10 810 157 HOH HOH . J 7 HOH A 11 811 75 HOH HOH . J 7 HOH A 12 812 85 HOH HOH . J 7 HOH A 13 813 15 HOH HOH . J 7 HOH A 14 814 53 HOH HOH . J 7 HOH A 15 815 133 HOH HOH . J 7 HOH A 16 816 19 HOH HOH . J 7 HOH A 17 817 155 HOH HOH . J 7 HOH A 18 818 131 HOH HOH . J 7 HOH A 19 819 147 HOH HOH . J 7 HOH A 20 820 159 HOH HOH . J 7 HOH A 21 821 122 HOH HOH . J 7 HOH A 22 822 33 HOH HOH . J 7 HOH A 23 823 11 HOH HOH . J 7 HOH A 24 824 62 HOH HOH . J 7 HOH A 25 825 13 HOH HOH . J 7 HOH A 26 826 38 HOH HOH . J 7 HOH A 27 827 2 HOH HOH . J 7 HOH A 28 828 24 HOH HOH . J 7 HOH A 29 829 140 HOH HOH . J 7 HOH A 30 830 98 HOH HOH . J 7 HOH A 31 831 42 HOH HOH . J 7 HOH A 32 832 68 HOH HOH . J 7 HOH A 33 833 25 HOH HOH . J 7 HOH A 34 834 60 HOH HOH . J 7 HOH A 35 835 37 HOH HOH . J 7 HOH A 36 836 57 HOH HOH . J 7 HOH A 37 837 121 HOH HOH . J 7 HOH A 38 838 71 HOH HOH . J 7 HOH A 39 839 21 HOH HOH . J 7 HOH A 40 840 31 HOH HOH . J 7 HOH A 41 841 100 HOH HOH . J 7 HOH A 42 842 95 HOH HOH . J 7 HOH A 43 843 94 HOH HOH . J 7 HOH A 44 844 87 HOH HOH . J 7 HOH A 45 845 74 HOH HOH . J 7 HOH A 46 846 10 HOH HOH . J 7 HOH A 47 847 80 HOH HOH . J 7 HOH A 48 848 51 HOH HOH . J 7 HOH A 49 849 44 HOH HOH . J 7 HOH A 50 850 41 HOH HOH . J 7 HOH A 51 851 59 HOH HOH . J 7 HOH A 52 852 1 HOH HOH . J 7 HOH A 53 853 112 HOH HOH . J 7 HOH A 54 854 55 HOH HOH . J 7 HOH A 55 855 81 HOH HOH . J 7 HOH A 56 856 84 HOH HOH . J 7 HOH A 57 857 143 HOH HOH . J 7 HOH A 58 858 20 HOH HOH . J 7 HOH A 59 859 3 HOH HOH . J 7 HOH A 60 860 76 HOH HOH . J 7 HOH A 61 861 83 HOH HOH . J 7 HOH A 62 862 144 HOH HOH . J 7 HOH A 63 863 92 HOH HOH . J 7 HOH A 64 864 108 HOH HOH . J 7 HOH A 65 865 77 HOH HOH . J 7 HOH A 66 866 22 HOH HOH . J 7 HOH A 67 867 43 HOH HOH . J 7 HOH A 68 868 58 HOH HOH . J 7 HOH A 69 869 12 HOH HOH . J 7 HOH A 70 870 17 HOH HOH . J 7 HOH A 71 871 137 HOH HOH . J 7 HOH A 72 872 34 HOH HOH . J 7 HOH A 73 873 18 HOH HOH . J 7 HOH A 74 874 124 HOH HOH . J 7 HOH A 75 875 14 HOH HOH . J 7 HOH A 76 876 126 HOH HOH . J 7 HOH A 77 877 29 HOH HOH . J 7 HOH A 78 878 96 HOH HOH . J 7 HOH A 79 879 160 HOH HOH . J 7 HOH A 80 880 150 HOH HOH . J 7 HOH A 81 881 130 HOH HOH . J 7 HOH A 82 882 148 HOH HOH . J 7 HOH A 83 883 67 HOH HOH . J 7 HOH A 84 884 69 HOH HOH . J 7 HOH A 85 885 116 HOH HOH . J 7 HOH A 86 886 50 HOH HOH . J 7 HOH A 87 887 47 HOH HOH . J 7 HOH A 88 888 128 HOH HOH . J 7 HOH A 89 889 49 HOH HOH . J 7 HOH A 90 890 30 HOH HOH . J 7 HOH A 91 891 154 HOH HOH . J 7 HOH A 92 892 64 HOH HOH . J 7 HOH A 93 893 39 HOH HOH . J 7 HOH A 94 894 106 HOH HOH . J 7 HOH A 95 895 26 HOH HOH . J 7 HOH A 96 896 136 HOH HOH . J 7 HOH A 97 897 32 HOH HOH . J 7 HOH A 98 898 119 HOH HOH . J 7 HOH A 99 899 70 HOH HOH . J 7 HOH A 100 900 145 HOH HOH . J 7 HOH A 101 901 8 HOH HOH . J 7 HOH A 102 902 99 HOH HOH . J 7 HOH A 103 903 79 HOH HOH . J 7 HOH A 104 904 109 HOH HOH . J 7 HOH A 105 905 6 HOH HOH . J 7 HOH A 106 906 45 HOH HOH . J 7 HOH A 107 907 78 HOH HOH . J 7 HOH A 108 908 35 HOH HOH . J 7 HOH A 109 909 7 HOH HOH . J 7 HOH A 110 910 27 HOH HOH . J 7 HOH A 111 911 103 HOH HOH . J 7 HOH A 112 912 93 HOH HOH . J 7 HOH A 113 913 9 HOH HOH . J 7 HOH A 114 914 23 HOH HOH . J 7 HOH A 115 915 127 HOH HOH . J 7 HOH A 116 916 61 HOH HOH . J 7 HOH A 117 917 48 HOH HOH . J 7 HOH A 118 918 56 HOH HOH . J 7 HOH A 119 919 104 HOH HOH . J 7 HOH A 120 920 82 HOH HOH . J 7 HOH A 121 921 114 HOH HOH . J 7 HOH A 122 922 5 HOH HOH . J 7 HOH A 123 923 72 HOH HOH . J 7 HOH A 124 924 86 HOH HOH . J 7 HOH A 125 925 152 HOH HOH . J 7 HOH A 126 926 52 HOH HOH . J 7 HOH A 127 927 46 HOH HOH . J 7 HOH A 128 928 97 HOH HOH . J 7 HOH A 129 929 129 HOH HOH . J 7 HOH A 130 930 73 HOH HOH . J 7 HOH A 131 931 54 HOH HOH . J 7 HOH A 132 932 123 HOH HOH . J 7 HOH A 133 933 115 HOH HOH . J 7 HOH A 134 934 107 HOH HOH . J 7 HOH A 135 935 153 HOH HOH . J 7 HOH A 136 936 149 HOH HOH . J 7 HOH A 137 937 120 HOH HOH . J 7 HOH A 138 938 117 HOH HOH . J 7 HOH A 139 939 161 HOH HOH . J 7 HOH A 140 940 102 HOH HOH . J 7 HOH A 141 941 91 HOH HOH . J 7 HOH A 142 942 135 HOH HOH . J 7 HOH A 143 943 88 HOH HOH . J 7 HOH A 144 944 63 HOH HOH . J 7 HOH A 145 945 134 HOH HOH . J 7 HOH A 146 946 158 HOH HOH . J 7 HOH A 147 947 146 HOH HOH . J 7 HOH A 148 948 113 HOH HOH . J 7 HOH A 149 949 139 HOH HOH . J 7 HOH A 150 950 125 HOH HOH . J 7 HOH A 151 951 132 HOH HOH . J 7 HOH A 152 952 156 HOH HOH . J 7 HOH A 153 953 110 HOH HOH . J 7 HOH A 154 954 101 HOH HOH . J 7 HOH A 155 955 141 HOH HOH . J 7 HOH A 156 956 118 HOH HOH . J 7 HOH A 157 957 151 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 LSL . . . B 2 -51.38 4.833 -3.763 1 77.87 ? C10 LSL 701 A 1 HETATM 2 C C13 LSL . . . B 2 -49.267 5.778 -3.113 1 69.8 ? C13 LSL 701 A 1 HETATM 3 C C15 LSL . . . B 2 -47.782 -0.49 -7.599 1 51.37 ? C15 LSL 701 A 1 HETATM 4 C C01 LSL . . . B 2 -46.009 -2.283 -7.177 1 52.31 ? C01 LSL 701 A 1 HETATM 5 C C02 LSL . . . B 2 -46.877 -1.08 -6.724 1 47.34 ? C02 LSL 701 A 1 HETATM 6 C C03 LSL . . . B 2 -46.707 -0.502 -5.471 1 47.48 ? C03 LSL 701 A 1 HETATM 7 C C04 LSL . . . B 2 -47.455 0.609 -5.096 1 49.9 ? C04 LSL 701 A 1 HETATM 8 C C05 LSL . . . B 2 -48.371 1.18 -5.975 1 56.6 ? C05 LSL 701 A 1 HETATM 9 C C06 LSL . . . B 2 -49.218 2.396 -5.553 1 61.73 ? C06 LSL 701 A 1 HETATM 10 C C08 LSL . . . B 2 -49.517 4.778 -5.657 1 66.66 ? C08 LSL 701 A 1 HETATM 11 C C09 LSL . . . B 2 -50.049 5.105 -4.246 1 69.37 ? C09 LSL 701 A 1 HETATM 12 C C12 LSL . . . B 2 -50.085 5.927 -1.932 1 66.59 ? C12 LSL 701 A 1 HETATM 13 C C14 LSL . . . B 2 -48.54 0.619 -7.23 1 46.15 ? C14 LSL 701 A 1 HETATM 14 N N07 LSL . . . B 2 -48.544 3.681 -5.695 1 59.31 ? N07 LSL 701 A 1 HETATM 15 N N17 LSL . . . B 2 -44.755 -2.59 -6.49 1 51.44 ? N17 LSL 701 A 1 HETATM 16 O O16 LSL . . . B 2 -46.28 -2.918 -8.139 1 53.7 ? O16 LSL 701 A 1 HETATM 17 O O18 LSL . . . B 2 -43.854 -3.631 -6.853 1 44.89 ? O18 LSL 701 A 1 HETATM 18 S S11 LSL . . . B 2 -51.568 5.334 -2.224 1 90.78 ? S11 LSL 701 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 18 #