data_7U6B # _model_server_result.job_id vsiO9MtsJAleBbPnKC0fPQ _model_server_result.datetime_utc '2024-11-08 09:56:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7u6b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 7U6B # _exptl.entry_id 7U6B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 313.394 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2E)-N-hydroxy-3-{1-[2-(1H-indol-3-yl)ethyl]piperidin-4-yl}prop-2-enamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7U6B _cell.length_a 80.499 _cell.length_b 80.499 _cell.length_c 247.678 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7U6B _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 543 B CYS 543 1_555 A SG CYS 543 B CYS 543 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc1 A O ASP 172 B ASP 172 1_555 C K K . B K 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.828 ? metalc ? metalc2 A OD2 ASP 172 B ASP 172 1_555 C K K . B K 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.928 ? metalc ? metalc3 A O ASP 174 B ASP 174 1_555 C K K . B K 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc4 A OD2 ASP 174 B ASP 174 1_555 E ZN ZN . B ZN 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? metalc ? metalc5 A O HIS 176 B HIS 176 1_555 C K K . B K 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc6 A ND1 HIS 176 B HIS 176 1_555 E ZN ZN . B ZN 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc7 A O PHE 185 B PHE 185 1_555 D K K . B K 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc8 A O ASP 188 B ASP 188 1_555 D K K . B K 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? metalc ? metalc9 A O VAL 191 B VAL 191 1_555 D K K . B K 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc10 A OG SER 195 B SER 195 1_555 C K K . B K 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.95 ? metalc ? metalc11 A O TRP 196 B TRP 196 1_555 C K K . B K 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc12 A O PHE 224 B PHE 224 1_555 D K K . B K 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.114 ? metalc ? metalc13 A OD2 ASP 267 B ASP 267 1_555 E ZN ZN . B ZN 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc14 B O17 LTO . B LTO 701 1_555 E ZN ZN . B ZN 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc15 B O19 LTO . B LTO 701 1_555 E ZN ZN . B ZN 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc16 D K K . B K 703 1_555 I O HOH . B HOH 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc17 D K K . B K 703 1_555 I O HOH . B HOH 844 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.335 ? # _chem_comp.formula 'C18 H23 N3 O2' _chem_comp.formula_weight 313.394 _chem_comp.id LTO _chem_comp.mon_nstd_flag . _chem_comp.name (2E)-N-hydroxy-3-{1-[2-(1H-indol-3-yl)ethyl]piperidin-4-yl}prop-2-enamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O17 C16 LTO doub 194 n n C01 C23 LTO doub 195 n y C01 C02 LTO sing 196 n y C23 C22 LTO sing 197 n y C16 C15 LTO sing 198 n n C16 N18 LTO sing 199 n n C12 C11 LTO sing 200 n n C12 C13 LTO sing 201 n n C15 C14 LTO doub 202 e n C11 N10 LTO sing 203 n n O19 N18 LTO sing 204 n n C08 C07 LTO sing 205 n n C08 C09 LTO sing 206 n n C02 C03 LTO doub 207 n y C14 C13 LTO sing 208 n n C22 C07 LTO sing 209 n y C22 C04 LTO doub 210 n y N10 C09 LTO sing 211 n n N10 C21 LTO sing 212 n n C13 C20 LTO sing 213 n n C07 C06 LTO doub 214 n y C03 C04 LTO sing 215 n y C04 N05 LTO sing 216 n y C20 C21 LTO sing 217 n n C06 N05 LTO sing 218 n y C13 H1 LTO sing 219 n n C15 H2 LTO sing 220 n n C20 H4 LTO sing 221 n n C20 H5 LTO sing 222 n n C21 H6 LTO sing 223 n n C21 H7 LTO sing 224 n n C01 H8 LTO sing 225 n n C02 H9 LTO sing 226 n n C03 H10 LTO sing 227 n n C06 H11 LTO sing 228 n n C08 H12 LTO sing 229 n n C08 H13 LTO sing 230 n n C09 H14 LTO sing 231 n n C09 H15 LTO sing 232 n n C11 H16 LTO sing 233 n n C11 H17 LTO sing 234 n n C12 H18 LTO sing 235 n n C12 H19 LTO sing 236 n n C14 H20 LTO sing 237 n n C23 H22 LTO sing 238 n n N05 H23 LTO sing 239 n n N18 H25 LTO sing 240 n n O19 H26 LTO sing 241 n n # _atom_sites.entry_id 7U6B _atom_sites.fract_transf_matrix[1][1] 0.012423 _atom_sites.fract_transf_matrix[1][2] 0.007172 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014344 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004038 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LTO B 1 701 701 LTO LIG . C 3 K B 1 702 1 K K . D 3 K B 1 703 2 K K . E 4 ZN B 1 704 1 ZN ZN . F 5 PO4 B 1 705 1 PO4 PO4 . G 5 PO4 B 1 706 2 PO4 PO4 . H 5 PO4 B 1 707 3 PO4 PO4 . I 6 HOH B 1 801 67 HOH HOH . I 6 HOH B 2 802 35 HOH HOH . I 6 HOH B 3 803 33 HOH HOH . I 6 HOH B 4 804 38 HOH HOH . I 6 HOH B 5 805 21 HOH HOH . I 6 HOH B 6 806 2 HOH HOH . I 6 HOH B 7 807 18 HOH HOH . I 6 HOH B 8 808 47 HOH HOH . I 6 HOH B 9 809 16 HOH HOH . I 6 HOH B 10 810 61 HOH HOH . I 6 HOH B 11 811 32 HOH HOH . I 6 HOH B 12 812 24 HOH HOH . I 6 HOH B 13 813 11 HOH HOH . I 6 HOH B 14 814 10 HOH HOH . I 6 HOH B 15 815 1 HOH HOH . I 6 HOH B 16 816 49 HOH HOH . I 6 HOH B 17 817 4 HOH HOH . I 6 HOH B 18 818 25 HOH HOH . I 6 HOH B 19 819 63 HOH HOH . I 6 HOH B 20 820 20 HOH HOH . I 6 HOH B 21 821 40 HOH HOH . I 6 HOH B 22 822 70 HOH HOH . I 6 HOH B 23 823 46 HOH HOH . I 6 HOH B 24 824 52 HOH HOH . I 6 HOH B 25 825 60 HOH HOH . I 6 HOH B 26 826 39 HOH HOH . I 6 HOH B 27 827 66 HOH HOH . I 6 HOH B 28 828 69 HOH HOH . I 6 HOH B 29 829 57 HOH HOH . I 6 HOH B 30 830 42 HOH HOH . I 6 HOH B 31 831 14 HOH HOH . I 6 HOH B 32 832 58 HOH HOH . I 6 HOH B 33 833 31 HOH HOH . I 6 HOH B 34 834 15 HOH HOH . I 6 HOH B 35 835 17 HOH HOH . I 6 HOH B 36 836 12 HOH HOH . I 6 HOH B 37 837 9 HOH HOH . I 6 HOH B 38 838 19 HOH HOH . I 6 HOH B 39 839 65 HOH HOH . I 6 HOH B 40 840 43 HOH HOH . I 6 HOH B 41 841 53 HOH HOH . I 6 HOH B 42 842 23 HOH HOH . I 6 HOH B 43 843 27 HOH HOH . I 6 HOH B 44 844 13 HOH HOH . I 6 HOH B 45 845 28 HOH HOH . I 6 HOH B 46 846 6 HOH HOH . I 6 HOH B 47 847 44 HOH HOH . I 6 HOH B 48 848 34 HOH HOH . I 6 HOH B 49 849 36 HOH HOH . I 6 HOH B 50 850 5 HOH HOH . I 6 HOH B 51 851 22 HOH HOH . I 6 HOH B 52 852 54 HOH HOH . I 6 HOH B 53 853 3 HOH HOH . I 6 HOH B 54 854 7 HOH HOH . I 6 HOH B 55 855 45 HOH HOH . I 6 HOH B 56 856 51 HOH HOH . I 6 HOH B 57 857 37 HOH HOH . I 6 HOH B 58 858 30 HOH HOH . I 6 HOH B 59 859 48 HOH HOH . I 6 HOH B 60 860 64 HOH HOH . I 6 HOH B 61 861 8 HOH HOH . I 6 HOH B 62 862 72 HOH HOH . I 6 HOH B 63 863 41 HOH HOH . I 6 HOH B 64 864 68 HOH HOH . I 6 HOH B 65 865 55 HOH HOH . I 6 HOH B 66 866 59 HOH HOH . I 6 HOH B 67 867 50 HOH HOH . I 6 HOH B 68 868 62 HOH HOH . I 6 HOH B 69 869 71 HOH HOH . I 6 HOH B 70 870 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 LTO . . . B 2 -24.347 -40.913 35.39 1 53.85 ? C13 LTO 701 B 1 HETATM 2 C C15 LTO . . . B 2 -22.169 -41.363 34.403 1 49.81 ? C15 LTO 701 B 1 HETATM 3 C C20 LTO . . . B 2 -25.01 -39.763 35.953 1 52 ? C20 LTO 701 B 1 HETATM 4 C C21 LTO . . . B 2 -26.468 -40.057 36.333 1 50.48 ? C21 LTO 701 B 1 HETATM 5 C C22 LTO . . . B 2 -31.907 -40.884 35.032 1 87.32 ? C22 LTO 701 B 1 HETATM 6 C C01 LTO . . . B 2 -33.45 -42.41 33.858 1 73.32 ? C01 LTO 701 B 1 HETATM 7 C C02 LTO . . . B 2 -34.487 -42.027 34.753 1 73.62 ? C02 LTO 701 B 1 HETATM 8 C C03 LTO . . . B 2 -34.236 -41.084 35.772 1 75.44 ? C03 LTO 701 B 1 HETATM 9 C C04 LTO . . . B 2 -32.928 -40.503 35.916 1 85.51 ? C04 LTO 701 B 1 HETATM 10 C C06 LTO . . . B 2 -31.089 -39.366 36.503 1 70.56 ? C06 LTO 701 B 1 HETATM 11 C C07 LTO . . . B 2 -30.769 -40.175 35.403 1 81.96 ? C07 LTO 701 B 1 HETATM 12 C C08 LTO . . . B 2 -29.406 -40.279 34.704 1 65.58 ? C08 LTO 701 B 1 HETATM 13 C C09 LTO . . . B 2 -28.311 -40.899 35.608 1 64.64 ? C09 LTO 701 B 1 HETATM 14 C C11 LTO . . . B 2 -26.557 -41.611 34.485 1 58.57 ? C11 LTO 701 B 1 HETATM 15 C C12 LTO . . . B 2 -25.06 -41.388 34.217 1 51.54 ? C12 LTO 701 B 1 HETATM 16 C C14 LTO . . . B 2 -22.926 -40.458 34.982 1 49.1 ? C14 LTO 701 B 1 HETATM 17 C C16 LTO . . . B 2 -20.8 -40.737 34.025 1 57.47 ? C16 LTO 701 B 1 HETATM 18 C C23 LTO . . . B 2 -32.166 -41.844 33.992 1 71.49 ? C23 LTO 701 B 1 HETATM 19 N N05 LTO . . . B 2 -32.397 -39.586 36.787 1 83.42 ? N05 LTO 701 B 1 HETATM 20 N N10 LTO . . . B 2 -27.217 -40.544 35.215 1 59.19 ? N10 LTO 701 B 1 HETATM 21 N N18 LTO . . . B 2 -19.904 -40.247 35.002 1 58.91 ? N18 LTO 701 B 1 HETATM 22 O O17 LTO . . . B 2 -20.508 -40.637 32.884 1 57.66 ? O17 LTO 701 B 1 HETATM 23 O O19 LTO . . . B 2 -18.668 -39.652 34.599 1 50.15 ? O19 LTO 701 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 23 #