data_7U6Y # _model_server_result.job_id bNePrGCJY-8QCo8zyjndKw _model_server_result.datetime_utc '2024-11-04 23:02:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7u6y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":402}' # _entry.id 7U6Y # _exptl.entry_id 7U6Y _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7U6Y _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7U6Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 7U6Y _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 3 ATP A 1 401 401 ATP ATP . G 3 ATP B 1 401 401 ATP ATP . H 3 ATP B 1 402 401 ATP ATP . I 3 ATP D 1 401 401 ATP ATP . J 3 ATP E 1 1601 2002 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . H 3 125.109 169.673 134.319 1 384.06 ? PG ATP 402 B 1 HETATM 2 O O1G ATP . . . H 3 123.652 169.91 134.113 1 384.06 ? O1G ATP 402 B 1 HETATM 3 O O2G ATP . . . H 3 125.557 168.257 133.959 1 384.06 ? O2G ATP 402 B 1 HETATM 4 O O3G ATP . . . H 3 125.592 170.004 135.734 1 384.06 ? O3G ATP 402 B 1 HETATM 5 P PB ATP . . . H 3 125.807 171.931 132.502 1 384.06 ? PB ATP 402 B 1 HETATM 6 O O1B ATP . . . H 3 125.051 171.683 131.26 1 384.06 ? O1B ATP 402 B 1 HETATM 7 O O2B ATP . . . H 3 125.242 173.016 133.418 1 384.06 ? O2B ATP 402 B 1 HETATM 8 O O3B ATP . . . H 3 125.969 170.619 133.372 1 384.06 ? O3B ATP 402 B 1 HETATM 9 P PA ATP . . . H 3 128.357 172.107 131.022 1 384.06 ? PA ATP 402 B 1 HETATM 10 O O1A ATP . . . H 3 128.878 173.407 130.554 1 384.06 ? O1A ATP 402 B 1 HETATM 11 O O2A ATP . . . H 3 127.663 171.254 129.962 1 384.06 ? O2A ATP 402 B 1 HETATM 12 O O3A ATP . . . H 3 127.325 172.308 132.21 1 384.06 ? O3A ATP 402 B 1 HETATM 13 O O5' ATP . . . H 3 129.49 171.235 131.692 1 384.06 ? O5' ATP 402 B 1 HETATM 14 C C5' ATP . . . H 3 129.558 169.807 131.486 1 384.06 ? C5' ATP 402 B 1 HETATM 15 C C4' ATP . . . H 3 129.998 169.151 132.77 1 384.06 ? C4' ATP 402 B 1 HETATM 16 O O4' ATP . . . H 3 131.363 169.525 133.057 1 384.06 ? O4' ATP 402 B 1 HETATM 17 C C3' ATP . . . H 3 129.196 169.542 134.007 1 384.06 ? C3' ATP 402 B 1 HETATM 18 O O3' ATP . . . H 3 128.097 168.657 134.192 1 384.06 ? O3' ATP 402 B 1 HETATM 19 C C2' ATP . . . H 3 130.224 169.4 135.128 1 384.06 ? C2' ATP 402 B 1 HETATM 20 O O2' ATP . . . H 3 130.346 168.052 135.563 1 384.06 ? O2' ATP 402 B 1 HETATM 21 C C1' ATP . . . H 3 131.506 169.854 134.426 1 384.06 ? C1' ATP 402 B 1 HETATM 22 N N9 ATP . . . H 3 131.764 171.284 134.524 1 384.06 ? N9 ATP 402 B 1 HETATM 23 C C8 ATP . . . H 3 131.619 172.219 133.533 1 384.06 ? C8 ATP 402 B 1 HETATM 24 N N7 ATP . . . H 3 131.921 173.439 133.902 1 384.06 ? N7 ATP 402 B 1 HETATM 25 C C5 ATP . . . H 3 132.294 173.299 135.229 1 384.06 ? C5 ATP 402 B 1 HETATM 26 C C6 ATP . . . H 3 132.728 174.224 136.195 1 384.06 ? C6 ATP 402 B 1 HETATM 27 N N6 ATP . . . H 3 132.866 175.532 135.96 1 384.06 ? N6 ATP 402 B 1 HETATM 28 N N1 ATP . . . H 3 133.022 173.753 137.428 1 384.06 ? N1 ATP 402 B 1 HETATM 29 C C2 ATP . . . H 3 132.883 172.448 137.668 1 384.06 ? C2 ATP 402 B 1 HETATM 30 N N3 ATP . . . H 3 132.483 171.484 136.837 1 384.06 ? N3 ATP 402 B 1 HETATM 31 C C4 ATP . . . H 3 132.201 171.976 135.626 1 384.06 ? C4 ATP 402 B 1 # _model_server_stats.io_time_ms 83 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #