data_7U87 # _model_server_result.job_id 4BxjN0gr_uE1sKxuzX286g _model_server_result.datetime_utc '2024-11-18 16:21:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7u87 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":102}' # _entry.id 7U87 # _exptl.entry_id 7U87 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7U87 _cell.length_a 42.741 _cell.length_b 42.741 _cell.length_c 83.28 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7U87 _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' LCC 1 A LCC 1 1_555 A P LCC 2 A LCC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.632 ? covale ? covale2 A O3' LCC 2 A LCC 2 1_555 A P LCC 3 A LCC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.61 ? covale ? covale3 A O3' LCC 3 A LCC 3 1_555 A P LCG 4 A LCG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.541 ? covale ? covale4 A O3' LCG 4 A LCG 4 1_555 A P A 5 A A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.554 ? covale ? covale5 A O3' C 13 A C 13 1_555 A P G46 14 A G46 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.63 ? covale ? covale6 A O3' G46 14 A G46 14 1_555 A P G46 15 A G46 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.669 ? covale ? covale7 B O3' LCC 1 B LCC 1 1_555 B P LCC 2 B LCC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.636 ? covale ? covale8 B O3' LCC 2 B LCC 2 1_555 B P LCC 3 B LCC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.616 ? covale ? covale9 B O3' LCC 3 B LCC 3 1_555 B P LCG 4 B LCG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.584 ? covale ? covale10 B O3' LCG 4 B LCG 4 1_555 B P A 5 B A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.571 ? covale ? covale11 B O3' C 13 B C 13 1_555 B P G46 14 B G46 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.631 ? covale ? covale12 B O3' G46 14 B G46 14 1_555 B P G46 15 B G46 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.613 ? metalc ? metalc1 D MG MG . A MG 102 1_555 H O HOH . A HOH 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc2 D MG MG . A MG 102 1_555 H O HOH . A HOH 217 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc3 D MG MG . A MG 102 1_555 H O HOH . A HOH 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc4 D MG MG . A MG 102 1_555 I O HOH . B HOH 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc5 D MG MG . A MG 102 1_555 I O HOH . B HOH 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc6 D MG MG . A MG 102 1_555 I O HOH . B HOH 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc7 H O HOH . A HOH 241 1_555 F MG MG . B MG 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc8 H O HOH . A HOH 244 1_555 F MG MG . B MG 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc9 H O HOH . A HOH 246 1_555 F MG MG . B MG 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc10 F MG MG . B MG 102 1_555 I O HOH . B HOH 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc11 F MG MG . B MG 102 1_555 I O HOH . B HOH 234 3_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc12 F MG MG . B MG 102 1_555 I O HOH . B HOH 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc13 G MG MG . B MG 103 1_555 I O HOH . B HOH 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc14 G MG MG . B MG 103 1_555 I O HOH . B HOH 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc15 G MG MG . B MG 103 1_555 I O HOH . B HOH 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc16 G MG MG . B MG 103 1_555 I O HOH . B HOH 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.911 ? metalc ? metalc17 G MG MG . B MG 103 1_555 I O HOH . B HOH 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc18 G MG MG . B MG 103 1_555 I O HOH . B HOH 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? hydrog WATSON-CRICK hydrog1 A N1 LCG 4 A LCG 4 1_555 B N3 C 13 B C 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 LCG 4 A LCG 4 1_555 B O2 C 13 B C 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 LCG 4 A LCG 4 1_555 B N4 C 13 B C 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 A 5 A A 5 1_555 B N3 U 12 B U 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N6 A 5 A A 5 1_555 B O4 U 12 B U 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N3 C 6 A C 6 1_555 B N1 G 11 B G 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N4 C 6 A C 6 1_555 B O6 G 11 B G 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O2 C 6 A C 6 1_555 B N2 G 11 B G 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N3 U 7 A U 7 1_555 B N1 A 10 B A 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O4 U 7 A U 7 1_555 B N6 A 10 B A 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 U 8 A U 8 1_555 B N1 A 9 B A 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O4 U 8 A U 8 1_555 B N6 A 9 B A 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 A 9 A A 9 1_555 B N3 U 8 B U 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N6 A 9 A A 9 1_555 B O4 U 8 B U 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N1 A 10 A A 10 1_555 B N3 U 7 B U 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N6 A 10 A A 10 1_555 B O4 U 7 B U 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N1 G 11 A G 11 1_555 B N3 C 6 B C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N2 G 11 A G 11 1_555 B O2 C 6 B C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O6 G 11 A G 11 1_555 B N4 C 6 B C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N3 U 12 A U 12 1_555 B N1 A 5 B A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O4 U 12 A U 12 1_555 B N6 A 5 B A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N3 C 13 A C 13 1_555 B N1 LCG 4 B LCG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N4 C 13 A C 13 1_555 B O6 LCG 4 B LCG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A O2 C 13 A C 13 1_555 B N2 LCG 4 B LCG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7U87 _atom_sites.fract_transf_matrix[1][1] 0.023397 _atom_sites.fract_transf_matrix[1][2] 0.013508 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027016 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012008 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LXI A 1 101 16 LXI SPG . D 3 MG A 1 102 2 MG MG . E 2 LXI B 1 101 16 LXI SPG . F 3 MG B 1 102 1 MG MG . G 3 MG B 1 103 3 MG MG . H 4 HOH A 1 201 89 HOH HOH . H 4 HOH A 2 202 13 HOH HOH . H 4 HOH A 3 203 68 HOH HOH . H 4 HOH A 4 204 30 HOH HOH . H 4 HOH A 5 205 7 HOH HOH . H 4 HOH A 6 206 9 HOH HOH . H 4 HOH A 7 207 86 HOH HOH . H 4 HOH A 8 208 103 HOH HOH . H 4 HOH A 9 209 48 HOH HOH . H 4 HOH A 10 210 97 HOH HOH . H 4 HOH A 11 211 82 HOH HOH . H 4 HOH A 12 212 16 HOH HOH . H 4 HOH A 13 213 104 HOH HOH . H 4 HOH A 14 214 78 HOH HOH . H 4 HOH A 15 215 66 HOH HOH . H 4 HOH A 16 216 95 HOH HOH . H 4 HOH A 17 217 11 HOH HOH . H 4 HOH A 18 218 39 HOH HOH . H 4 HOH A 19 219 58 HOH HOH . H 4 HOH A 20 220 92 HOH HOH . H 4 HOH A 21 221 31 HOH HOH . H 4 HOH A 22 222 72 HOH HOH . H 4 HOH A 23 223 50 HOH HOH . H 4 HOH A 24 224 28 HOH HOH . H 4 HOH A 25 225 83 HOH HOH . H 4 HOH A 26 226 64 HOH HOH . H 4 HOH A 27 227 6 HOH HOH . H 4 HOH A 28 228 10 HOH HOH . H 4 HOH A 29 229 51 HOH HOH . H 4 HOH A 30 230 73 HOH HOH . H 4 HOH A 31 231 57 HOH HOH . H 4 HOH A 32 232 38 HOH HOH . H 4 HOH A 33 233 90 HOH HOH . H 4 HOH A 34 234 98 HOH HOH . H 4 HOH A 35 235 33 HOH HOH . H 4 HOH A 36 236 35 HOH HOH . H 4 HOH A 37 237 32 HOH HOH . H 4 HOH A 38 238 59 HOH HOH . H 4 HOH A 39 239 37 HOH HOH . H 4 HOH A 40 240 63 HOH HOH . H 4 HOH A 41 241 5 HOH HOH . H 4 HOH A 42 242 36 HOH HOH . H 4 HOH A 43 243 67 HOH HOH . H 4 HOH A 44 244 3 HOH HOH . H 4 HOH A 45 245 52 HOH HOH . H 4 HOH A 46 246 4 HOH HOH . I 4 HOH B 1 201 77 HOH HOH . I 4 HOH B 2 202 44 HOH HOH . I 4 HOH B 3 203 106 HOH HOH . I 4 HOH B 4 204 54 HOH HOH . I 4 HOH B 5 205 34 HOH HOH . I 4 HOH B 6 206 71 HOH HOH . I 4 HOH B 7 207 80 HOH HOH . I 4 HOH B 8 208 47 HOH HOH . I 4 HOH B 9 209 100 HOH HOH . I 4 HOH B 10 210 40 HOH HOH . I 4 HOH B 11 211 88 HOH HOH . I 4 HOH B 12 212 8 HOH HOH . I 4 HOH B 13 213 94 HOH HOH . I 4 HOH B 14 214 102 HOH HOH . I 4 HOH B 15 215 84 HOH HOH . I 4 HOH B 16 216 85 HOH HOH . I 4 HOH B 17 217 74 HOH HOH . I 4 HOH B 18 218 43 HOH HOH . I 4 HOH B 19 219 15 HOH HOH . I 4 HOH B 20 220 23 HOH HOH . I 4 HOH B 21 221 22 HOH HOH . I 4 HOH B 22 222 18 HOH HOH . I 4 HOH B 23 223 25 HOH HOH . I 4 HOH B 24 224 21 HOH HOH . I 4 HOH B 25 225 56 HOH HOH . I 4 HOH B 26 226 20 HOH HOH . I 4 HOH B 27 227 42 HOH HOH . I 4 HOH B 28 228 62 HOH HOH . I 4 HOH B 29 229 93 HOH HOH . I 4 HOH B 30 230 79 HOH HOH . I 4 HOH B 31 231 53 HOH HOH . I 4 HOH B 32 232 17 HOH HOH . I 4 HOH B 33 233 26 HOH HOH . I 4 HOH B 34 234 1 HOH HOH . I 4 HOH B 35 235 2 HOH HOH . I 4 HOH B 36 236 61 HOH HOH . I 4 HOH B 37 237 60 HOH HOH . I 4 HOH B 38 238 65 HOH HOH . I 4 HOH B 39 239 107 HOH HOH . I 4 HOH B 40 240 24 HOH HOH . I 4 HOH B 41 241 91 HOH HOH . I 4 HOH B 42 242 81 HOH HOH . I 4 HOH B 43 243 49 HOH HOH . I 4 HOH B 44 244 76 HOH HOH . I 4 HOH B 45 245 27 HOH HOH . I 4 HOH B 46 246 41 HOH HOH . I 4 HOH B 47 247 75 HOH HOH . I 4 HOH B 48 248 19 HOH HOH . I 4 HOH B 49 249 29 HOH HOH . I 4 HOH B 50 250 87 HOH HOH . I 4 HOH B 51 251 46 HOH HOH . I 4 HOH B 52 252 12 HOH HOH . I 4 HOH B 53 253 55 HOH HOH . I 4 HOH B 54 254 99 HOH HOH . I 4 HOH B 55 255 101 HOH HOH . I 4 HOH B 56 256 14 HOH HOH . I 4 HOH B 57 257 69 HOH HOH . I 4 HOH B 58 258 96 HOH HOH . I 4 HOH B 59 259 105 HOH HOH . I 4 HOH B 60 260 70 HOH HOH . I 4 HOH B 61 261 45 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 20.211 _atom_site.Cartn_y 4.506 _atom_site.Cartn_z 17.742 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 18.91 _atom_site.pdbx_formal_charge 0 _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 102 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #