data_7U8B # _model_server_result.job_id pGWRTv3HT7KyuMWE05zOqw _model_server_result.datetime_utc '2024-11-22 14:57:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7u8b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 7U8B # _exptl.entry_id 7U8B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 412.298 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-O-[(S)-(2-amino-1H-imidazol-1-yl)(hydroxy)phosphoryl]adenosine" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7U8B _cell.length_a 43.455 _cell.length_b 43.455 _cell.length_c 81.122 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7U8B _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' TLN 1 A TLN 1 1_555 A P LCC 2 A LCC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.676 ? covale ? covale2 A O3' LCC 2 A LCC 2 1_555 A P LCC 3 A LCC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.591 ? covale ? covale3 A O3' LCC 3 A LCC 3 1_555 A P LCG 4 A LCG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.581 ? covale ? covale4 A O3' LCG 4 A LCG 4 1_555 A P A 5 A A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.557 ? covale ? covale5 A O3' G 14 A G 14 1_555 A P G46 15 A G46 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.668 ? covale ? covale6 B O3' TLN 1 B TLN 1 1_555 B P LCC 2 B LCC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.616 ? covale ? covale7 B O3' LCC 2 B LCC 2 1_555 B P LCC 3 B LCC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.6 ? covale ? covale8 B O3' LCC 3 B LCC 3 1_555 B P LCG 4 B LCG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.607 ? covale ? covale9 B O3' LCG 4 B LCG 4 1_555 B P A 5 B A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.574 ? covale ? covale10 B O3' G 14 B G 14 1_555 B P G46 15 B G46 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.675 ? hydrog WATSON-CRICK hydrog1 A N1 LCG 4 A LCG 4 1_555 B N3 C 13 B C 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 LCG 4 A LCG 4 1_555 B O2 C 13 B C 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 LCG 4 A LCG 4 1_555 B N4 C 13 B C 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 A 5 A A 5 1_555 B N3 U 12 B U 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N6 A 5 A A 5 1_555 B O4 U 12 B U 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N3 C 6 A C 6 1_555 B N1 G 11 B G 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N4 C 6 A C 6 1_555 B O6 G 11 B G 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O2 C 6 A C 6 1_555 B N2 G 11 B G 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N3 U 7 A U 7 1_555 B N1 A 10 B A 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O4 U 7 A U 7 1_555 B N6 A 10 B A 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 U 8 A U 8 1_555 B N1 A 9 B A 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O4 U 8 A U 8 1_555 B N6 A 9 B A 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 A 9 A A 9 1_555 B N3 U 8 B U 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N6 A 9 A A 9 1_555 B O4 U 8 B U 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N1 A 10 A A 10 1_555 B N3 U 7 B U 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N6 A 10 A A 10 1_555 B O4 U 7 B U 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N1 G 11 A G 11 1_555 B N3 C 6 B C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N2 G 11 A G 11 1_555 B O2 C 6 B C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O6 G 11 A G 11 1_555 B N4 C 6 B C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N3 U 12 A U 12 1_555 B N1 A 5 B A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O4 U 12 A U 12 1_555 B N6 A 5 B A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N3 C 13 A C 13 1_555 B N1 LCG 4 B LCG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N4 C 13 A C 13 1_555 B O6 LCG 4 B LCG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A O2 C 13 A C 13 1_555 B N2 LCG 4 B LCG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C13 H17 N8 O6 P' _chem_comp.formula_weight 412.298 _chem_comp.id LXR _chem_comp.mon_nstd_flag . _chem_comp.name "5'-O-[(S)-(2-amino-1H-imidazol-1-yl)(hydroxy)phosphoryl]adenosine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C6 LXR doub 241 n y N1 C9 LXR sing 242 n y C6 N3 LXR sing 243 n y N7 C9 LXR sing 244 n n C9 C8 LXR doub 245 n y N3 C7 LXR doub 246 n y C8 C7 LXR sing 247 n y C8 N4 LXR sing 248 n y C7 N5 LXR sing 249 n y N4 C10 LXR doub 250 n y N5 C5 LXR sing 251 n n N5 C10 LXR sing 252 n y C5 O4 LXR sing 253 n n C5 C4 LXR sing 254 n n O6 C4 LXR sing 255 n n O4 C2 LXR sing 256 n n C4 C3 LXR sing 257 n n C12 C11 LXR doub 258 n y C12 N9 LXR sing 259 n y C11 N6 LXR sing 260 n y C2 C3 LXR sing 261 n n C2 C1 LXR sing 262 n n O3 C1 LXR sing 263 n n O3 P1 LXR sing 264 n n C3 O5 LXR sing 265 n n O1 P1 LXR doub 266 n n N9 C13 LXR doub 267 n y N6 P1 LXR sing 268 n n N6 C13 LXR sing 269 n y P1 O2 LXR sing 270 n n C13 N8 LXR sing 271 n n C10 H1 LXR sing 272 n n C11 H2 LXR sing 273 n n C12 H3 LXR sing 274 n n N8 H4 LXR sing 275 n n N8 H5 LXR sing 276 n n O2 H6 LXR sing 277 n n C1 H7 LXR sing 278 n n C1 H8 LXR sing 279 n n C2 H9 LXR sing 280 n n C3 H10 LXR sing 281 n n O5 H11 LXR sing 282 n n C4 H12 LXR sing 283 n n O6 H13 LXR sing 284 n n C5 H14 LXR sing 285 n n C6 H15 LXR sing 286 n n N7 H16 LXR sing 287 n n N7 H17 LXR sing 288 n n # _atom_sites.entry_id 7U8B _atom_sites.fract_transf_matrix[1][1] 0.023012 _atom_sites.fract_transf_matrix[1][2] 0.013286 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026572 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012327 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LXR A 1 101 16 LXR EQA . D 3 SO4 A 1 102 1 SO4 SO4 . E 3 SO4 A 1 103 2 SO4 SO4 . F 4 HOH A 1 201 61 HOH HOH . F 4 HOH A 2 202 23 HOH HOH . F 4 HOH A 3 203 76 HOH HOH . F 4 HOH A 4 204 35 HOH HOH . F 4 HOH A 5 205 5 HOH HOH . F 4 HOH A 6 206 36 HOH HOH . F 4 HOH A 7 207 13 HOH HOH . F 4 HOH A 8 208 52 HOH HOH . F 4 HOH A 9 209 81 HOH HOH . F 4 HOH A 10 210 56 HOH HOH . F 4 HOH A 11 211 27 HOH HOH . F 4 HOH A 12 212 82 HOH HOH . F 4 HOH A 13 213 53 HOH HOH . F 4 HOH A 14 214 22 HOH HOH . F 4 HOH A 15 215 10 HOH HOH . F 4 HOH A 16 216 41 HOH HOH . F 4 HOH A 17 217 33 HOH HOH . F 4 HOH A 18 218 21 HOH HOH . F 4 HOH A 19 219 59 HOH HOH . F 4 HOH A 20 220 32 HOH HOH . F 4 HOH A 21 221 6 HOH HOH . F 4 HOH A 22 222 50 HOH HOH . F 4 HOH A 23 223 28 HOH HOH . F 4 HOH A 24 224 80 HOH HOH . F 4 HOH A 25 225 46 HOH HOH . F 4 HOH A 26 226 55 HOH HOH . F 4 HOH A 27 227 15 HOH HOH . F 4 HOH A 28 228 20 HOH HOH . F 4 HOH A 29 229 11 HOH HOH . F 4 HOH A 30 230 60 HOH HOH . F 4 HOH A 31 231 57 HOH HOH . F 4 HOH A 32 232 38 HOH HOH . F 4 HOH A 33 233 62 HOH HOH . F 4 HOH A 34 234 47 HOH HOH . F 4 HOH A 35 235 54 HOH HOH . F 4 HOH A 36 236 48 HOH HOH . F 4 HOH A 37 237 58 HOH HOH . F 4 HOH A 38 238 37 HOH HOH . F 4 HOH A 39 239 31 HOH HOH . F 4 HOH A 40 240 69 HOH HOH . G 4 HOH B 1 101 34 HOH HOH . G 4 HOH B 2 102 44 HOH HOH . G 4 HOH B 3 103 51 HOH HOH . G 4 HOH B 4 104 42 HOH HOH . G 4 HOH B 5 105 65 HOH HOH . G 4 HOH B 6 106 70 HOH HOH . G 4 HOH B 7 107 68 HOH HOH . G 4 HOH B 8 108 43 HOH HOH . G 4 HOH B 9 109 63 HOH HOH . G 4 HOH B 10 110 73 HOH HOH . G 4 HOH B 11 111 26 HOH HOH . G 4 HOH B 12 112 3 HOH HOH . G 4 HOH B 13 113 40 HOH HOH . G 4 HOH B 14 114 7 HOH HOH . G 4 HOH B 15 115 29 HOH HOH . G 4 HOH B 16 116 39 HOH HOH . G 4 HOH B 17 117 75 HOH HOH . G 4 HOH B 18 118 67 HOH HOH . G 4 HOH B 19 119 24 HOH HOH . G 4 HOH B 20 120 45 HOH HOH . G 4 HOH B 21 121 25 HOH HOH . G 4 HOH B 22 122 74 HOH HOH . G 4 HOH B 23 123 12 HOH HOH . G 4 HOH B 24 124 8 HOH HOH . G 4 HOH B 25 125 1 HOH HOH . G 4 HOH B 26 126 16 HOH HOH . G 4 HOH B 27 127 2 HOH HOH . G 4 HOH B 28 128 17 HOH HOH . G 4 HOH B 29 129 30 HOH HOH . G 4 HOH B 30 130 49 HOH HOH . G 4 HOH B 31 131 18 HOH HOH . G 4 HOH B 32 132 72 HOH HOH . G 4 HOH B 33 133 77 HOH HOH . G 4 HOH B 34 134 19 HOH HOH . G 4 HOH B 35 135 9 HOH HOH . G 4 HOH B 36 136 66 HOH HOH . G 4 HOH B 37 137 14 HOH HOH . G 4 HOH B 38 138 4 HOH HOH . G 4 HOH B 39 139 79 HOH HOH . G 4 HOH B 40 140 64 HOH HOH . G 4 HOH B 41 141 71 HOH HOH . G 4 HOH B 42 142 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 LXR . . . C 2 14.466 10.026 40.493 1 45.76 0 C10 LXR 101 A 1 HETATM 2 C C13 LXR . . . C 2 16.42 8.974 43.093 1 88.83 0 C13 LXR 101 A 1 HETATM 3 C C11 LXR . . . C 2 17.638 7.883 41.738 1 89.22 0 C11 LXR 101 A 1 HETATM 4 C C12 LXR . . . C 2 16.406 7.378 41.671 1 87.07 0 C12 LXR 101 A 1 HETATM 5 N N8 LXR . . . C 2 15.971 9.838 43.998 1 80.31 0 N8 LXR 101 A 1 HETATM 6 N N9 LXR . . . C 2 15.641 8.056 42.521 1 88.35 0 N9 LXR 101 A 1 HETATM 7 N N6 LXR . . . C 2 17.674 8.893 42.618 1 92.44 0 N6 LXR 101 A 1 HETATM 8 P P1 LXR . . . C 2 19.232 9.814 42.97 1 92.26 0 P1 LXR 101 A 1 HETATM 9 O O2 LXR . . . C 2 19.388 10.141 44.537 1 97.3 0 O2 LXR 101 A 1 HETATM 10 O O1 LXR . . . C 2 20.518 9.281 42.498 1 93.41 0 O1 LXR 101 A 1 HETATM 11 O O3 LXR . . . C 2 19.2 11.317 42.357 1 84.08 0 O3 LXR 101 A 1 HETATM 12 C C1 LXR . . . C 2 18.308 12.29 42.88 1 80.08 0 C1 LXR 101 A 1 HETATM 13 C C2 LXR . . . C 2 17.382 12.809 41.768 1 75.08 0 C2 LXR 101 A 1 HETATM 14 O O4 LXR . . . C 2 16.718 11.758 40.998 1 69.62 0 O4 LXR 101 A 1 HETATM 15 C C3 LXR . . . C 2 16.239 13.57 42.44 1 74.41 0 C3 LXR 101 A 1 HETATM 16 O O5 LXR . . . C 2 16.633 14.947 42.69 1 74.79 0 O5 LXR 101 A 1 HETATM 17 C C4 LXR . . . C 2 15.045 13.421 41.459 1 69.08 0 C4 LXR 101 A 1 HETATM 18 O O6 LXR . . . C 2 14.762 14.58 40.678 1 69.18 0 O6 LXR 101 A 1 HETATM 19 C C5 LXR . . . C 2 15.461 12.331 40.481 1 60.92 0 C5 LXR 101 A 1 HETATM 20 N N5 LXR . . . C 2 14.332 11.353 40.336 1 49.48 0 N5 LXR 101 A 1 HETATM 21 N N4 LXR . . . C 2 13.283 9.438 40.292 1 43.92 0 N4 LXR 101 A 1 HETATM 22 C C8 LXR . . . C 2 12.392 10.411 40.014 1 40.48 0 C8 LXR 101 A 1 HETATM 23 C C7 LXR . . . C 2 13.039 11.6 40.037 1 43.19 0 C7 LXR 101 A 1 HETATM 24 N N3 LXR . . . C 2 12.355 12.747 39.792 1 39.3 0 N3 LXR 101 A 1 HETATM 25 C C6 LXR . . . C 2 10.963 12.716 39.5 1 36.86 0 C6 LXR 101 A 1 HETATM 26 N N1 LXR . . . C 2 10.326 11.453 39.468 1 36.38 0 N1 LXR 101 A 1 HETATM 27 C C9 LXR . . . C 2 11.069 10.355 39.727 1 41.38 0 C9 LXR 101 A 1 HETATM 28 N N7 LXR . . . C 2 10.503 9.144 39.717 1 40.8 0 N7 LXR 101 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #