data_7U8D # _model_server_result.job_id dKBQTvg2C7aryhLm64sVjA _model_server_result.datetime_utc '2024-12-16 01:45:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7u8d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":202}' # _entry.id 7U8D # _exptl.entry_id 7U8D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 112.14 _cell.angle_beta 97.04 _cell.angle_gamma 104.57 _cell.entry_id 7U8D _cell.length_a 37.683 _cell.length_b 44.138 _cell.length_c 44.403 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7U8D _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7U8D _atom_sites.fract_transf_matrix[1][1] 0.026537 _atom_sites.fract_transf_matrix[1][2] 0.006898 _atom_sites.fract_transf_matrix[1][3] 0.006853 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023409 _atom_sites.fract_transf_matrix[2][3] 0.010973 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025062 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LWR A 1 201 108 LWR R3Z . D 3 GOL A 1 202 1 GOL GOL . E 2 LWR B 1 201 108 LWR R3Z . F 3 GOL B 1 202 2 GOL GOL . G 4 HOH A 1 301 153 HOH HOH . G 4 HOH A 2 302 239 HOH HOH . G 4 HOH A 3 303 215 HOH HOH . G 4 HOH A 4 304 244 HOH HOH . G 4 HOH A 5 305 202 HOH HOH . G 4 HOH A 6 306 101 HOH HOH . G 4 HOH A 7 307 167 HOH HOH . G 4 HOH A 8 308 190 HOH HOH . G 4 HOH A 9 309 146 HOH HOH . G 4 HOH A 10 310 179 HOH HOH . G 4 HOH A 11 311 169 HOH HOH . G 4 HOH A 12 312 41 HOH HOH . G 4 HOH A 13 313 56 HOH HOH . G 4 HOH A 14 314 230 HOH HOH . G 4 HOH A 15 315 159 HOH HOH . G 4 HOH A 16 316 55 HOH HOH . G 4 HOH A 17 317 292 HOH HOH . G 4 HOH A 18 318 39 HOH HOH . G 4 HOH A 19 319 221 HOH HOH . G 4 HOH A 20 320 79 HOH HOH . G 4 HOH A 21 321 113 HOH HOH . G 4 HOH A 22 322 35 HOH HOH . G 4 HOH A 23 323 5 HOH HOH . G 4 HOH A 24 324 94 HOH HOH . G 4 HOH A 25 325 129 HOH HOH . G 4 HOH A 26 326 43 HOH HOH . G 4 HOH A 27 327 136 HOH HOH . G 4 HOH A 28 328 155 HOH HOH . G 4 HOH A 29 329 91 HOH HOH . G 4 HOH A 30 330 93 HOH HOH . G 4 HOH A 31 331 218 HOH HOH . G 4 HOH A 32 332 207 HOH HOH . G 4 HOH A 33 333 26 HOH HOH . G 4 HOH A 34 334 11 HOH HOH . G 4 HOH A 35 335 269 HOH HOH . G 4 HOH A 36 336 52 HOH HOH . G 4 HOH A 37 337 20 HOH HOH . G 4 HOH A 38 338 256 HOH HOH . G 4 HOH A 39 339 173 HOH HOH . G 4 HOH A 40 340 4 HOH HOH . G 4 HOH A 41 341 7 HOH HOH . G 4 HOH A 42 342 16 HOH HOH . G 4 HOH A 43 343 10 HOH HOH . G 4 HOH A 44 344 133 HOH HOH . G 4 HOH A 45 345 194 HOH HOH . G 4 HOH A 46 346 40 HOH HOH . G 4 HOH A 47 347 240 HOH HOH . G 4 HOH A 48 348 127 HOH HOH . G 4 HOH A 49 349 273 HOH HOH . G 4 HOH A 50 350 171 HOH HOH . G 4 HOH A 51 351 17 HOH HOH . G 4 HOH A 52 352 200 HOH HOH . G 4 HOH A 53 353 21 HOH HOH . G 4 HOH A 54 354 126 HOH HOH . G 4 HOH A 55 355 34 HOH HOH . G 4 HOH A 56 356 27 HOH HOH . G 4 HOH A 57 357 117 HOH HOH . G 4 HOH A 58 358 192 HOH HOH . G 4 HOH A 59 359 210 HOH HOH . G 4 HOH A 60 360 291 HOH HOH . G 4 HOH A 61 361 14 HOH HOH . G 4 HOH A 62 362 15 HOH HOH . G 4 HOH A 63 363 8 HOH HOH . G 4 HOH A 64 364 166 HOH HOH . G 4 HOH A 65 365 38 HOH HOH . G 4 HOH A 66 366 223 HOH HOH . G 4 HOH A 67 367 97 HOH HOH . G 4 HOH A 68 368 135 HOH HOH . G 4 HOH A 69 369 9 HOH HOH . G 4 HOH A 70 370 18 HOH HOH . G 4 HOH A 71 371 33 HOH HOH . G 4 HOH A 72 372 289 HOH HOH . G 4 HOH A 73 373 28 HOH HOH . G 4 HOH A 74 374 19 HOH HOH . G 4 HOH A 75 375 111 HOH HOH . G 4 HOH A 76 376 100 HOH HOH . G 4 HOH A 77 377 227 HOH HOH . G 4 HOH A 78 378 1 HOH HOH . G 4 HOH A 79 379 23 HOH HOH . G 4 HOH A 80 380 128 HOH HOH . G 4 HOH A 81 381 255 HOH HOH . G 4 HOH A 82 382 12 HOH HOH . G 4 HOH A 83 383 54 HOH HOH . G 4 HOH A 84 384 6 HOH HOH . G 4 HOH A 85 385 131 HOH HOH . G 4 HOH A 86 386 36 HOH HOH . G 4 HOH A 87 387 24 HOH HOH . G 4 HOH A 88 388 37 HOH HOH . G 4 HOH A 89 389 138 HOH HOH . G 4 HOH A 90 390 3 HOH HOH . G 4 HOH A 91 391 114 HOH HOH . G 4 HOH A 92 392 96 HOH HOH . G 4 HOH A 93 393 170 HOH HOH . G 4 HOH A 94 394 157 HOH HOH . G 4 HOH A 95 395 201 HOH HOH . G 4 HOH A 96 396 130 HOH HOH . G 4 HOH A 97 397 242 HOH HOH . G 4 HOH A 98 398 245 HOH HOH . G 4 HOH A 99 399 241 HOH HOH . G 4 HOH A 100 400 149 HOH HOH . G 4 HOH A 101 401 270 HOH HOH . G 4 HOH A 102 402 172 HOH HOH . G 4 HOH A 103 403 251 HOH HOH . G 4 HOH A 104 404 219 HOH HOH . G 4 HOH A 105 405 51 HOH HOH . G 4 HOH A 106 406 187 HOH HOH . G 4 HOH A 107 407 220 HOH HOH . G 4 HOH A 108 408 143 HOH HOH . G 4 HOH A 109 409 209 HOH HOH . G 4 HOH A 110 410 164 HOH HOH . G 4 HOH A 111 411 92 HOH HOH . G 4 HOH A 112 412 176 HOH HOH . G 4 HOH A 113 413 206 HOH HOH . G 4 HOH A 114 414 264 HOH HOH . G 4 HOH A 115 415 22 HOH HOH . G 4 HOH A 116 416 32 HOH HOH . G 4 HOH A 117 417 262 HOH HOH . G 4 HOH A 118 418 112 HOH HOH . G 4 HOH A 119 419 147 HOH HOH . G 4 HOH A 120 420 295 HOH HOH . G 4 HOH A 121 421 196 HOH HOH . G 4 HOH A 122 422 178 HOH HOH . G 4 HOH A 123 423 29 HOH HOH . G 4 HOH A 124 424 272 HOH HOH . G 4 HOH A 125 425 25 HOH HOH . G 4 HOH A 126 426 53 HOH HOH . G 4 HOH A 127 427 274 HOH HOH . G 4 HOH A 128 428 45 HOH HOH . G 4 HOH A 129 429 263 HOH HOH . G 4 HOH A 130 430 287 HOH HOH . G 4 HOH A 131 431 161 HOH HOH . G 4 HOH A 132 432 212 HOH HOH . G 4 HOH A 133 433 180 HOH HOH . G 4 HOH A 134 434 228 HOH HOH . G 4 HOH A 135 435 252 HOH HOH . G 4 HOH A 136 436 286 HOH HOH . G 4 HOH A 137 437 145 HOH HOH . G 4 HOH A 138 438 31 HOH HOH . G 4 HOH A 139 439 199 HOH HOH . G 4 HOH A 140 440 253 HOH HOH . G 4 HOH A 141 441 98 HOH HOH . G 4 HOH A 142 442 248 HOH HOH . G 4 HOH A 143 443 258 HOH HOH . G 4 HOH A 144 444 158 HOH HOH . G 4 HOH A 145 445 30 HOH HOH . G 4 HOH A 146 446 280 HOH HOH . G 4 HOH A 147 447 99 HOH HOH . G 4 HOH A 148 448 211 HOH HOH . G 4 HOH A 149 449 137 HOH HOH . G 4 HOH A 150 450 281 HOH HOH . G 4 HOH A 151 451 144 HOH HOH . G 4 HOH A 152 452 290 HOH HOH . H 4 HOH B 1 301 267 HOH HOH . H 4 HOH B 2 302 261 HOH HOH . H 4 HOH B 3 303 142 HOH HOH . H 4 HOH B 4 304 222 HOH HOH . H 4 HOH B 5 305 278 HOH HOH . H 4 HOH B 6 306 246 HOH HOH . H 4 HOH B 7 307 107 HOH HOH . H 4 HOH B 8 308 42 HOH HOH . H 4 HOH B 9 309 208 HOH HOH . H 4 HOH B 10 310 148 HOH HOH . H 4 HOH B 11 311 217 HOH HOH . H 4 HOH B 12 312 182 HOH HOH . H 4 HOH B 13 313 122 HOH HOH . H 4 HOH B 14 314 110 HOH HOH . H 4 HOH B 15 315 84 HOH HOH . H 4 HOH B 16 316 78 HOH HOH . H 4 HOH B 17 317 124 HOH HOH . H 4 HOH B 18 318 81 HOH HOH . H 4 HOH B 19 319 231 HOH HOH . H 4 HOH B 20 320 174 HOH HOH . H 4 HOH B 21 321 233 HOH HOH . H 4 HOH B 22 322 64 HOH HOH . H 4 HOH B 23 323 243 HOH HOH . H 4 HOH B 24 324 83 HOH HOH . H 4 HOH B 25 325 216 HOH HOH . H 4 HOH B 26 326 156 HOH HOH . H 4 HOH B 27 327 254 HOH HOH . H 4 HOH B 28 328 65 HOH HOH . H 4 HOH B 29 329 183 HOH HOH . H 4 HOH B 30 330 48 HOH HOH . H 4 HOH B 31 331 86 HOH HOH . H 4 HOH B 32 332 66 HOH HOH . H 4 HOH B 33 333 88 HOH HOH . H 4 HOH B 34 334 89 HOH HOH . H 4 HOH B 35 335 60 HOH HOH . H 4 HOH B 36 336 279 HOH HOH . H 4 HOH B 37 337 44 HOH HOH . H 4 HOH B 38 338 104 HOH HOH . H 4 HOH B 39 339 260 HOH HOH . H 4 HOH B 40 340 120 HOH HOH . H 4 HOH B 41 341 266 HOH HOH . H 4 HOH B 42 342 77 HOH HOH . H 4 HOH B 43 343 108 HOH HOH . H 4 HOH B 44 344 181 HOH HOH . H 4 HOH B 45 345 134 HOH HOH . H 4 HOH B 46 346 62 HOH HOH . H 4 HOH B 47 347 74 HOH HOH . H 4 HOH B 48 348 151 HOH HOH . H 4 HOH B 49 349 80 HOH HOH . H 4 HOH B 50 350 50 HOH HOH . H 4 HOH B 51 351 204 HOH HOH . H 4 HOH B 52 352 109 HOH HOH . H 4 HOH B 53 353 69 HOH HOH . H 4 HOH B 54 354 213 HOH HOH . H 4 HOH B 55 355 58 HOH HOH . H 4 HOH B 56 356 154 HOH HOH . H 4 HOH B 57 357 46 HOH HOH . H 4 HOH B 58 358 125 HOH HOH . H 4 HOH B 59 359 265 HOH HOH . H 4 HOH B 60 360 63 HOH HOH . H 4 HOH B 61 361 87 HOH HOH . H 4 HOH B 62 362 232 HOH HOH . H 4 HOH B 63 363 165 HOH HOH . H 4 HOH B 64 364 57 HOH HOH . H 4 HOH B 65 365 68 HOH HOH . H 4 HOH B 66 366 90 HOH HOH . H 4 HOH B 67 367 184 HOH HOH . H 4 HOH B 68 368 73 HOH HOH . H 4 HOH B 69 369 152 HOH HOH . H 4 HOH B 70 370 193 HOH HOH . H 4 HOH B 71 371 13 HOH HOH . H 4 HOH B 72 372 49 HOH HOH . H 4 HOH B 73 373 61 HOH HOH . H 4 HOH B 74 374 103 HOH HOH . H 4 HOH B 75 375 160 HOH HOH . H 4 HOH B 76 376 121 HOH HOH . H 4 HOH B 77 377 163 HOH HOH . H 4 HOH B 78 378 76 HOH HOH . H 4 HOH B 79 379 150 HOH HOH . H 4 HOH B 80 380 70 HOH HOH . H 4 HOH B 81 381 85 HOH HOH . H 4 HOH B 82 382 250 HOH HOH . H 4 HOH B 83 383 226 HOH HOH . H 4 HOH B 84 384 175 HOH HOH . H 4 HOH B 85 385 67 HOH HOH . H 4 HOH B 86 386 188 HOH HOH . H 4 HOH B 87 387 82 HOH HOH . H 4 HOH B 88 388 249 HOH HOH . H 4 HOH B 89 389 191 HOH HOH . H 4 HOH B 90 390 139 HOH HOH . H 4 HOH B 91 391 185 HOH HOH . H 4 HOH B 92 392 115 HOH HOH . H 4 HOH B 93 393 203 HOH HOH . H 4 HOH B 94 394 141 HOH HOH . H 4 HOH B 95 395 277 HOH HOH . H 4 HOH B 96 396 224 HOH HOH . H 4 HOH B 97 397 237 HOH HOH . H 4 HOH B 98 398 132 HOH HOH . H 4 HOH B 99 399 225 HOH HOH . H 4 HOH B 100 400 168 HOH HOH . H 4 HOH B 101 401 72 HOH HOH . H 4 HOH B 102 402 119 HOH HOH . H 4 HOH B 103 403 214 HOH HOH . H 4 HOH B 104 404 257 HOH HOH . H 4 HOH B 105 405 162 HOH HOH . H 4 HOH B 106 406 238 HOH HOH . H 4 HOH B 107 407 106 HOH HOH . H 4 HOH B 108 408 71 HOH HOH . H 4 HOH B 109 409 294 HOH HOH . H 4 HOH B 110 410 275 HOH HOH . H 4 HOH B 111 411 102 HOH HOH . H 4 HOH B 112 412 259 HOH HOH . H 4 HOH B 113 413 140 HOH HOH . H 4 HOH B 114 414 205 HOH HOH . H 4 HOH B 115 415 268 HOH HOH . H 4 HOH B 116 416 271 HOH HOH . H 4 HOH B 117 417 75 HOH HOH . H 4 HOH B 118 418 123 HOH HOH . H 4 HOH B 119 419 282 HOH HOH . H 4 HOH B 120 420 235 HOH HOH . H 4 HOH B 121 421 95 HOH HOH . H 4 HOH B 122 422 198 HOH HOH . H 4 HOH B 123 423 116 HOH HOH . H 4 HOH B 124 424 47 HOH HOH . H 4 HOH B 125 425 285 HOH HOH . H 4 HOH B 126 426 195 HOH HOH . H 4 HOH B 127 427 247 HOH HOH . H 4 HOH B 128 428 283 HOH HOH . H 4 HOH B 129 429 186 HOH HOH . H 4 HOH B 130 430 118 HOH HOH . H 4 HOH B 131 431 2 HOH HOH . H 4 HOH B 132 432 197 HOH HOH . H 4 HOH B 133 433 105 HOH HOH . H 4 HOH B 134 434 59 HOH HOH . H 4 HOH B 135 435 229 HOH HOH . H 4 HOH B 136 436 236 HOH HOH . H 4 HOH B 137 437 189 HOH HOH . H 4 HOH B 138 438 276 HOH HOH . H 4 HOH B 139 439 177 HOH HOH . H 4 HOH B 140 440 284 HOH HOH . H 4 HOH B 141 441 234 HOH HOH . H 4 HOH B 142 442 288 HOH HOH . H 4 HOH B 143 443 293 HOH HOH . H 4 HOH B 144 444 296 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 -7.478 -3.259 -20.488 1 51.67 ? C1 GOL 202 B 1 HETATM 2 O O1 GOL . . . F 3 -8.164 -4.448 -20.778 1 52.68 ? O1 GOL 202 B 1 HETATM 3 C C2 GOL . . . F 3 -8.165 -2.571 -19.258 1 70.99 ? C2 GOL 202 B 1 HETATM 4 O O2 GOL . . . F 3 -9.499 -2.902 -19.156 1 40.32 ? O2 GOL 202 B 1 HETATM 5 C C3 GOL . . . F 3 -7.265 -3.008 -18.07 1 43.4 ? C3 GOL 202 B 1 HETATM 6 O O3 GOL . . . F 3 -7.898 -2.764 -16.844 1 37.42 ? O3 GOL 202 B 1 HETATM 7 H H11 GOL . . . F 3 -7.481 -2.64 -21.235 1 62.02 ? H11 GOL 202 B 1 HETATM 8 H H12 GOL . . . F 3 -6.544 -3.415 -20.277 1 62.02 ? H12 GOL 202 B 1 HETATM 9 H HO1 GOL . . . F 3 -8.979 -4.226 -20.905 1 63.22 ? HO1 GOL 202 B 1 HETATM 10 H H2 GOL . . . F 3 -8.188 -1.603 -19.322 1 85.2 ? H2 GOL 202 B 1 HETATM 11 H HO2 GOL . . . F 3 -9.804 -2.504 -18.463 1 48.4 ? HO2 GOL 202 B 1 HETATM 12 H H31 GOL . . . F 3 -6.422 -2.536 -18.153 1 52.09 ? H31 GOL 202 B 1 HETATM 13 H H32 GOL . . . F 3 -7.048 -3.945 -18.196 1 52.09 ? H32 GOL 202 B 1 HETATM 14 H HO3 GOL . . . F 3 -7.319 -2.867 -16.233 1 44.92 ? HO3 GOL 202 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 14 #