data_7U8F # _model_server_result.job_id HX2ITDG2mDI8B-L-jjdF7w _model_server_result.datetime_utc '2025-01-11 05:02:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7u8f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":1201}' # _entry.id 7U8F # _exptl.entry_id 7U8F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7U8F _cell.length_a 180.892 _cell.length_b 180.892 _cell.length_c 555.884 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7U8F _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,J,K,L,M,V,W,X 1 1 D,E,F,N,O,P,Q,R,S,T,U,Y,Z,AA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id Q _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 286 A CYS 323 1_555 G ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc2 A SG CYS 289 A CYS 326 1_555 G ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc3 A SG CYS 354 A CYS 391 1_555 G ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc4 A SG CYS 357 A CYS 394 1_555 G ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc5 C SG CYS 7 C CYS 142 1_555 M ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc6 C SG CYS 10 C CYS 145 1_555 M ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc7 C NE2 HIS 23 C HIS 158 1_555 M ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc8 C NE2 HIS 27 C HIS 162 1_555 M ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc9 D SG CYS 286 D CYS 323 1_555 N ZN ZN . D ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc10 D SG CYS 289 D CYS 326 1_555 N ZN ZN . D ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc11 D SG CYS 354 D CYS 391 1_555 N ZN ZN . D ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc12 D SG CYS 357 D CYS 394 1_555 N ZN ZN . D ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc13 F SG CYS 7 F CYS 142 1_555 U ZN ZN . F ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc14 F SG CYS 10 F CYS 145 1_555 U ZN ZN . F ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc15 F NE2 HIS 23 F HIS 158 1_555 U ZN ZN . F ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc16 F NE2 HIS 27 F HIS 162 1_555 U ZN ZN . F ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.909 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 83 n n N1 C6 EPE sing 84 n n N1 C9 EPE sing 85 n n C2 C3 EPE sing 86 n n C2 H21 EPE sing 87 n n C2 H22 EPE sing 88 n n C3 N4 EPE sing 89 n n C3 H31 EPE sing 90 n n C3 H32 EPE sing 91 n n N4 C5 EPE sing 92 n n N4 C7 EPE sing 93 n n C5 C6 EPE sing 94 n n C5 H51 EPE sing 95 n n C5 H52 EPE sing 96 n n C6 H61 EPE sing 97 n n C6 H62 EPE sing 98 n n C7 C8 EPE sing 99 n n C7 H71 EPE sing 100 n n C7 H72 EPE sing 101 n n C8 O8 EPE sing 102 n n C8 H81 EPE sing 103 n n C8 H82 EPE sing 104 n n O8 HO8 EPE sing 105 n n C9 C10 EPE sing 106 n n C9 H91 EPE sing 107 n n C9 H92 EPE sing 108 n n C10 S EPE sing 109 n n C10 H101 EPE sing 110 n n C10 H102 EPE sing 111 n n S O1S EPE doub 112 n n S O2S EPE doub 113 n n S O3S EPE sing 114 n n O3S HOS3 EPE sing 115 n n # _atom_sites.entry_id 7U8F _atom_sites.fract_transf_matrix[1][1] 0.005528 _atom_sites.fract_transf_matrix[1][2] 0.003192 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006383 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001799 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 ZN A 1 501 501 ZN ZN . H 5 LWK A 1 502 1 LWK LI1 . I 6 SO4 B 1 1201 1 SO4 SO4 . J 6 SO4 B 1 1202 4 SO4 SO4 . K 6 SO4 B 1 1203 6 SO4 SO4 . L 6 SO4 B 1 1204 8 SO4 SO4 . M 4 ZN C 1 201 201 ZN ZN . N 4 ZN D 1 501 501 ZN ZN . O 5 LWK D 1 502 1 LWK LI1 . P 6 SO4 D 1 503 7 SO4 SO4 . Q 7 EPE E 1 1201 1201 EPE EPE . R 6 SO4 E 1 1202 2 SO4 SO4 . S 6 SO4 E 1 1203 3 SO4 SO4 . T 6 SO4 E 1 1204 5 SO4 SO4 . U 4 ZN F 1 201 201 ZN ZN . V 8 HOH A 1 601 13 HOH HOH . V 8 HOH A 2 602 17 HOH HOH . W 8 HOH B 1 1301 5 HOH HOH . W 8 HOH B 2 1302 7 HOH HOH . W 8 HOH B 3 1303 15 HOH HOH . W 8 HOH B 4 1304 9 HOH HOH . W 8 HOH B 5 1305 8 HOH HOH . W 8 HOH B 6 1306 12 HOH HOH . W 8 HOH B 7 1307 1 HOH HOH . W 8 HOH B 8 1308 10 HOH HOH . X 8 HOH C 1 301 2 HOH HOH . Y 8 HOH D 1 601 18 HOH HOH . Z 8 HOH E 1 1301 6 HOH HOH . Z 8 HOH E 2 1302 14 HOH HOH . Z 8 HOH E 3 1303 4 HOH HOH . Z 8 HOH E 4 1304 16 HOH HOH . Z 8 HOH E 5 1305 11 HOH HOH . Z 8 HOH E 6 1306 19 HOH HOH . AA 8 HOH F 1 301 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . Q 7 -38.829 -15.22 14.658 1 128.22 ? N1 EPE 1201 E 1 HETATM 2 C C2 EPE . . . Q 7 -39.519 -14.023 14.194 1 134.05 ? C2 EPE 1201 E 1 HETATM 3 C C3 EPE . . . Q 7 -38.668 -12.786 14.45 1 133.75 ? C3 EPE 1201 E 1 HETATM 4 N N4 EPE . . . Q 7 -38.314 -12.696 15.848 1 123.33 ? N4 EPE 1201 E 1 HETATM 5 C C5 EPE . . . Q 7 -37.901 -13.91 16.513 1 143.56 ? C5 EPE 1201 E 1 HETATM 6 C C6 EPE . . . Q 7 -38.763 -15.101 16.11 1 139.84 ? C6 EPE 1201 E 1 HETATM 7 C C7 EPE . . . Q 7 -37.912 -11.437 16.443 1 126.3 ? C7 EPE 1201 E 1 HETATM 8 C C8 EPE . . . Q 7 -38.964 -10.371 16.201 1 131 ? C8 EPE 1201 E 1 HETATM 9 O O8 EPE . . . Q 7 -38.412 -9.128 16.565 1 108.57 ? O8 EPE 1201 E 1 HETATM 10 C C9 EPE . . . Q 7 -39.695 -16.367 14.4 1 123.5 ? C9 EPE 1201 E 1 HETATM 11 C C10 EPE . . . Q 7 -38.852 -17.308 13.567 1 127.54 ? C10 EPE 1201 E 1 HETATM 12 S S EPE . . . Q 7 -39.84 -18.305 12.438 1 171.77 ? S EPE 1201 E 1 HETATM 13 O O1S EPE . . . Q 7 -38.944 -19.128 11.628 1 134.36 ? O1S EPE 1201 E 1 HETATM 14 O O2S EPE . . . Q 7 -40.6 -17.394 11.589 1 170.52 ? O2S EPE 1201 E 1 HETATM 15 O O3S EPE . . . Q 7 -40.745 -19.193 13.165 1 162.91 ? O3S EPE 1201 E 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 15 #