data_7U8G
#
_model_server_result.job_id            Tbp17Dj4I3Z9yaL7Z-MjNw 
_model_server_result.datetime_utc      '2024-11-04 22:43:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7u8g 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":201}' 
#
_entry.id    7U8G 
#
_exptl.entry_id    7U8G 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              760.076 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7U8G 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7U8G 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
? 5 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 538 A CYS 244 1_555 A SG CYS 551 A CYS 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 C SG CYS 21 D CYS 21 1_555 C SG CYS 95 D CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf3 C SG CYS 35 D CYS 35 1_555 C SG CYS 50 D CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 D SG CYS 23 E CYS 23 1_555 D SG CYS 88 E CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 A ND2 ASN 426 A ASN 132 1_555 I C1 NAG . A NAG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale2 A ND2 ASN 443 A ASN 149 1_555 H C1 NAG . A NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale3 A ND2 ASN 534 A ASN 240 1_555 G C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
metalc ? metalc1 A NE2 HIS 395 A HIS 101 1_555 J FE HEM . A HEM 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc2 A NE2 HIS 409 A HIS 115 1_555 K FE HEM . A HEM 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc3 A NE2 HIS 503 A HIS 209 1_555 J FE HEM . A HEM 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? 
metalc ? metalc4 A NE2 HIS 516 A HIS 222 1_555 K FE HEM . A HEM 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? 
#
_chem_comp.formula           'C42 H82 N O8 P' 
_chem_comp.formula_weight    760.076 
_chem_comp.id                POV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     POPC 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C12 POV sing 370 n n 
N C13 POV sing 371 n n 
N C14 POV sing 372 n n 
N C15 POV sing 373 n n 
P O11 POV sing 374 n n 
P O12 POV sing 375 n n 
P O13 POV sing 376 n n 
P O14 POV doub 377 n n 
C1 C2 POV sing 378 n n 
C1 O11 POV sing 379 n n 
C1 H1 POV sing 380 n n 
C1 H1A POV sing 381 n n 
C2 C3 POV sing 382 n n 
C2 O21 POV sing 383 n n 
C2 H2 POV sing 384 n n 
C3 O31 POV sing 385 n n 
C3 H3 POV sing 386 n n 
C3 H3A POV sing 387 n n 
C210 C211 POV sing 388 n n 
C210 C29 POV doub 389 z n 
C210 H210 POV sing 390 n n 
C310 C311 POV sing 391 n n 
C310 C39 POV sing 392 n n 
C310 H310 POV sing 393 n n 
C310 H31A POV sing 394 n n 
C11 C12 POV sing 395 n n 
C11 O12 POV sing 396 n n 
C11 H11 POV sing 397 n n 
C11 H11A POV sing 398 n n 
C211 C212 POV sing 399 n n 
C211 H211 POV sing 400 n n 
C211 H21A POV sing 401 n n 
C311 C312 POV sing 402 n n 
C311 H311 POV sing 403 n n 
C311 H31B POV sing 404 n n 
C12 H12 POV sing 405 n n 
C12 H12A POV sing 406 n n 
C212 C213 POV sing 407 n n 
C212 H212 POV sing 408 n n 
C212 H21B POV sing 409 n n 
C312 C313 POV sing 410 n n 
C312 H312 POV sing 411 n n 
C312 H31C POV sing 412 n n 
C13 H13 POV sing 413 n n 
C13 H13A POV sing 414 n n 
C13 H13B POV sing 415 n n 
C213 C214 POV sing 416 n n 
C213 H213 POV sing 417 n n 
C213 H21C POV sing 418 n n 
C313 C314 POV sing 419 n n 
C313 H313 POV sing 420 n n 
C313 H31D POV sing 421 n n 
C14 H14 POV sing 422 n n 
C14 H14A POV sing 423 n n 
C14 H14B POV sing 424 n n 
C214 C215 POV sing 425 n n 
C214 H214 POV sing 426 n n 
C214 H21D POV sing 427 n n 
C314 C315 POV sing 428 n n 
C314 H314 POV sing 429 n n 
C314 H31E POV sing 430 n n 
C15 H15 POV sing 431 n n 
C15 H15A POV sing 432 n n 
C15 H15B POV sing 433 n n 
C215 C216 POV sing 434 n n 
C215 H215 POV sing 435 n n 
C215 H21E POV sing 436 n n 
C315 C316 POV sing 437 n n 
C315 H315 POV sing 438 n n 
C315 H31F POV sing 439 n n 
C216 C217 POV sing 440 n n 
C216 H216 POV sing 441 n n 
C216 H21F POV sing 442 n n 
C316 H316 POV sing 443 n n 
C316 H31G POV sing 444 n n 
C316 H31H POV sing 445 n n 
C217 C218 POV sing 446 n n 
C217 H217 POV sing 447 n n 
C217 H21G POV sing 448 n n 
C218 H218 POV sing 449 n n 
C218 H21H POV sing 450 n n 
C218 H21J POV sing 451 n n 
C21 O21 POV sing 452 n n 
C21 C22 POV sing 453 n n 
C21 O22 POV doub 454 n n 
C22 C23 POV sing 455 n n 
C22 H22 POV sing 456 n n 
C22 H22A POV sing 457 n n 
C23 C24 POV sing 458 n n 
C23 H23 POV sing 459 n n 
C23 H23A POV sing 460 n n 
C24 C25 POV sing 461 n n 
C24 H24 POV sing 462 n n 
C24 H24A POV sing 463 n n 
C25 C26 POV sing 464 n n 
C25 H25 POV sing 465 n n 
C25 H25A POV sing 466 n n 
C26 C27 POV sing 467 n n 
C26 H26 POV sing 468 n n 
C26 H26A POV sing 469 n n 
C27 C28 POV sing 470 n n 
C27 H27 POV sing 471 n n 
C27 H27A POV sing 472 n n 
C28 C29 POV sing 473 n n 
C28 H28 POV sing 474 n n 
C28 H28A POV sing 475 n n 
C29 H29 POV sing 476 n n 
C31 O31 POV sing 477 n n 
C31 C32 POV sing 478 n n 
C31 O32 POV doub 479 n n 
C32 C33 POV sing 480 n n 
C32 H32 POV sing 481 n n 
C32 H32A POV sing 482 n n 
C33 C34 POV sing 483 n n 
C33 H33 POV sing 484 n n 
C33 H33A POV sing 485 n n 
C34 C35 POV sing 486 n n 
C34 H34 POV sing 487 n n 
C34 H34A POV sing 488 n n 
C35 C36 POV sing 489 n n 
C35 H35 POV sing 490 n n 
C35 H35A POV sing 491 n n 
C36 C37 POV sing 492 n n 
C36 H36 POV sing 493 n n 
C36 H36A POV sing 494 n n 
C37 C38 POV sing 495 n n 
C37 H37 POV sing 496 n n 
C37 H37A POV sing 497 n n 
C38 C39 POV sing 498 n n 
C38 H38 POV sing 499 n n 
C38 H38A POV sing 500 n n 
C39 H39 POV sing 501 n n 
C39 H39A POV sing 502 n n 
#
_atom_sites.entry_id                     7U8G 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 POV A 1 601 5 POV POV . 
F 5 POV A 1 602 8 POV POV . 
G 6 NAG A 1 603 9 NAG NAG . 
H 6 NAG A 1 604 10 NAG NAG . 
I 6 NAG A 1 605 11 NAG NAG . 
J 7 HEM A 1 606 1605 HEM HEM . 
K 7 HEM A 1 607 1606 HEM HEM . 
L 5 POV B 1 201 6 POV POV . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P POV . . . L 5 131.551 130.471 129.185 1 27.46 ? P POV 201 B 1 
HETATM 2 C C1 POV . . . L 5 131.903 129.219 131.493 1 27.46 ? C1 POV 201 B 1 
HETATM 3 C C2 POV . . . L 5 130.513 129.512 132.065 1 27.46 ? C2 POV 201 B 1 
HETATM 4 C C3 POV . . . L 5 130.579 130.8 132.896 1 27.46 ? C3 POV 201 B 1 
HETATM 5 C C310 POV . . . L 5 130.006 130.85 145.837 1 27.46 ? C310 POV 201 B 1 
HETATM 6 O O11 POV . . . L 5 132.304 130.296 130.665 1 27.46 ? O11 POV 201 B 1 
HETATM 7 O O12 POV . . . L 5 132.526 130.681 128.115 1 27.46 ? O12 POV 201 B 1 
HETATM 8 O O13 POV . . . L 5 130.785 131.714 129.124 1 27.46 ? O13 POV 201 B 1 
HETATM 9 C C31 POV . . . L 5 130.132 131.62 135.095 1 27.46 ? C31 POV 201 B 1 
HETATM 10 O O31 POV . . . L 5 129.903 130.6 134.133 1 27.46 ? O31 POV 201 B 1 
HETATM 11 C C32 POV . . . L 5 129.385 131.583 136.458 1 27.46 ? C32 POV 201 B 1 
HETATM 12 O O32 POV . . . L 5 130.887 132.503 134.857 1 27.46 ? O32 POV 201 B 1 
HETATM 13 C C33 POV . . . L 5 130.347 132.004 137.61 1 27.46 ? C33 POV 201 B 1 
HETATM 14 C C34 POV . . . L 5 130.379 130.866 138.676 1 27.46 ? C34 POV 201 B 1 
HETATM 15 C C35 POV . . . L 5 130.83 131.417 140.062 1 27.46 ? C35 POV 201 B 1 
HETATM 16 C C36 POV . . . L 5 130.932 130.94 141.542 1 27.46 ? C36 POV 201 B 1 
HETATM 17 C C37 POV . . . L 5 131.46 132.085 142.447 1 27.46 ? C37 POV 201 B 1 
HETATM 18 C C38 POV . . . L 5 131.514 131.58 143.923 1 27.46 ? C38 POV 201 B 1 
HETATM 19 C C39 POV . . . L 5 130.127 131.789 144.596 1 27.46 ? C39 POV 201 B 1 
HETATM 20 H H1 POV . . . L 5 132.618 129.102 132.309 1 27.46 ? H1 POV 201 B 1 
HETATM 21 H H1A POV . . . L 5 131.87 128.302 130.906 1 27.46 ? H1A POV 201 B 1 
HETATM 22 H H2 POV . . . L 5 130.202 128.685 132.703 1 27.46 ? H2 POV 201 B 1 
HETATM 23 H H3 POV . . . L 5 131.622 131.052 133.085 1 27.46 ? H3 POV 201 B 1 
HETATM 24 H H3A POV . . . L 5 130.101 131.611 132.347 1 27.46 ? H3A POV 201 B 1 
HETATM 25 H H310 POV . . . L 5 129.889 129.819 145.5 1 27.46 ? H310 POV 201 B 1 
HETATM 26 H H31A POV . . . L 5 129.135 131.139 146.427 1 27.46 ? H31A POV 201 B 1 
HETATM 27 H H32 POV . . . L 5 128.542 132.27 136.424 1 27.46 ? H32 POV 201 B 1 
HETATM 28 H H32A POV . . . L 5 129.019 130.573 136.635 1 27.46 ? H32A POV 201 B 1 
HETATM 29 H H33 POV . . . L 5 131.348 132.159 137.215 1 27.46 ? H33 POV 201 B 1 
HETATM 30 H H33A POV . . . L 5 129.989 132.923 138.065 1 27.46 ? H33A POV 201 B 1 
HETATM 31 H H34 POV . . . L 5 129.379 130.434 138.778 1 27.46 ? H34 POV 201 B 1 
HETATM 32 H H34A POV . . . L 5 131.074 130.091 138.354 1 27.46 ? H34A POV 201 B 1 
HETATM 33 H H35 POV . . . L 5 131.9 131.409 139.856 1 27.46 ? H35 POV 201 B 1 
HETATM 34 H H35A POV . . . L 5 129.986 132.088 140.209 1 27.46 ? H35A POV 201 B 1 
HETATM 35 H H36 POV . . . L 5 129.946 130.632 141.889 1 27.46 ? H36 POV 201 B 1 
HETATM 36 H H36A POV . . . L 5 131.616 130.091 141.6 1 27.46 ? H36A POV 201 B 1 
HETATM 37 H H37 POV . . . L 5 130.79 132.94 142.376 1 27.46 ? H37 POV 201 B 1 
HETATM 38 H H37A POV . . . L 5 132.459 132.374 142.124 1 27.46 ? H37A POV 201 B 1 
HETATM 39 H H38 POV . . . L 5 132.272 132.141 144.471 1 27.46 ? H38 POV 201 B 1 
HETATM 40 H H38A POV . . . L 5 131.766 130.52 143.935 1 27.46 ? H38A POV 201 B 1 
HETATM 41 H H39 POV . . . L 5 130.032 132.826 144.918 1 27.46 ? H39 POV 201 B 1 
HETATM 42 H H39A POV . . . L 5 129.335 131.557 143.884 1 27.46 ? H39A POV 201 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           42 
#