data_7U8G
#
_model_server_result.job_id            5bC24xCJLHEyTTCGGbQjbQ 
_model_server_result.datetime_utc      '2024-11-04 22:44:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7u8g 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":604}' 
#
_entry.id    7U8G 
#
_exptl.entry_id    7U8G 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7U8G 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7U8G 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 G N N 
? 6 H N N 
? 6 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 538 A CYS 244 1_555 A SG CYS 551 A CYS 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 C SG CYS 21 D CYS 21 1_555 C SG CYS 95 D CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf3 C SG CYS 35 D CYS 35 1_555 C SG CYS 50 D CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 D SG CYS 23 E CYS 23 1_555 D SG CYS 88 E CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 A ND2 ASN 426 A ASN 132 1_555 I C1 NAG . A NAG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale2 A ND2 ASN 443 A ASN 149 1_555 H C1 NAG . A NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale3 A ND2 ASN 534 A ASN 240 1_555 G C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
metalc ? metalc1 A NE2 HIS 395 A HIS 101 1_555 J FE HEM . A HEM 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc2 A NE2 HIS 409 A HIS 115 1_555 K FE HEM . A HEM 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc3 A NE2 HIS 503 A HIS 209 1_555 J FE HEM . A HEM 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? 
metalc ? metalc4 A NE2 HIS 516 A HIS 222 1_555 K FE HEM . A HEM 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 317 n n 
C1 O1 NAG sing 318 n n 
C1 O5 NAG sing 319 n n 
C1 H1 NAG sing 320 n n 
C2 C3 NAG sing 321 n n 
C2 N2 NAG sing 322 n n 
C2 H2 NAG sing 323 n n 
C3 C4 NAG sing 324 n n 
C3 O3 NAG sing 325 n n 
C3 H3 NAG sing 326 n n 
C4 C5 NAG sing 327 n n 
C4 O4 NAG sing 328 n n 
C4 H4 NAG sing 329 n n 
C5 C6 NAG sing 330 n n 
C5 O5 NAG sing 331 n n 
C5 H5 NAG sing 332 n n 
C6 O6 NAG sing 333 n n 
C6 H61 NAG sing 334 n n 
C6 H62 NAG sing 335 n n 
C7 C8 NAG sing 336 n n 
C7 N2 NAG sing 337 n n 
C7 O7 NAG doub 338 n n 
C8 H81 NAG sing 339 n n 
C8 H82 NAG sing 340 n n 
C8 H83 NAG sing 341 n n 
N2 HN2 NAG sing 342 n n 
O1 HO1 NAG sing 343 n n 
O3 HO3 NAG sing 344 n n 
O4 HO4 NAG sing 345 n n 
O6 HO6 NAG sing 346 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7U8G 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 POV A 1 601 5 POV POV . 
F 5 POV A 1 602 8 POV POV . 
G 6 NAG A 1 603 9 NAG NAG . 
H 6 NAG A 1 604 10 NAG NAG . 
I 6 NAG A 1 605 11 NAG NAG . 
J 7 HEM A 1 606 1605 HEM HEM . 
K 7 HEM A 1 607 1606 HEM HEM . 
L 5 POV B 1 201 6 POV POV . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . H 6 160.804 147.386 114.855 1 51.23 ? C1 NAG 604 A 1 
HETATM 2 C C2 NAG . . . H 6 161.468 146.898 113.569 1 51.23 ? C2 NAG 604 A 1 
HETATM 3 C C3 NAG . . . H 6 162.827 147.568 113.392 1 51.23 ? C3 NAG 604 A 1 
HETATM 4 C C4 NAG . . . H 6 162.688 149.082 113.471 1 51.23 ? C4 NAG 604 A 1 
HETATM 5 C C5 NAG . . . H 6 161.97 149.479 114.757 1 51.23 ? C5 NAG 604 A 1 
HETATM 6 C C6 NAG . . . H 6 161.684 150.96 114.842 1 51.23 ? C6 NAG 604 A 1 
HETATM 7 C C7 NAG . . . H 6 160.641 144.623 113.166 1 51.23 ? C7 NAG 604 A 1 
HETATM 8 C C8 NAG . . . H 6 160.958 143.159 113.238 1 51.23 ? C8 NAG 604 A 1 
HETATM 9 N N2 NAG . . . H 6 161.608 145.451 113.572 1 51.23 ? N2 NAG 604 A 1 
HETATM 10 O O3 NAG . . . H 6 163.377 147.195 112.134 1 51.23 ? O3 NAG 604 A 1 
HETATM 11 O O4 NAG . . . H 6 163.974 149.691 113.448 1 51.23 ? O4 NAG 604 A 1 
HETATM 12 O O5 NAG . . . H 6 160.703 148.811 114.833 1 51.23 ? O5 NAG 604 A 1 
HETATM 13 O O6 NAG . . . H 6 160.298 151.209 115.029 1 51.23 ? O6 NAG 604 A 1 
HETATM 14 O O7 NAG . . . H 6 159.56 145.035 112.76 1 51.23 ? O7 NAG 604 A 1 
HETATM 15 H H1 NAG . . . H 6 161.355 147.118 115.614 1 51.23 ? H1 NAG 604 A 1 
HETATM 16 H H2 NAG . . . H 6 160.903 147.156 112.816 1 51.23 ? H2 NAG 604 A 1 
HETATM 17 H H3 NAG . . . H 6 163.425 147.266 114.102 1 51.23 ? H3 NAG 604 A 1 
HETATM 18 H H4 NAG . . . H 6 162.171 149.397 112.705 1 51.23 ? H4 NAG 604 A 1 
HETATM 19 H H5 NAG . . . H 6 162.516 149.215 115.522 1 51.23 ? H5 NAG 604 A 1 
HETATM 20 H H61 NAG . . . H 6 162.181 151.339 115.591 1 51.23 ? H61 NAG 604 A 1 
HETATM 21 H H62 NAG . . . H 6 161.976 151.389 114.015 1 51.23 ? H62 NAG 604 A 1 
HETATM 22 H H81 NAG . . . H 6 161.146 142.912 114.163 1 51.23 ? H81 NAG 604 A 1 
HETATM 23 H H82 NAG . . . H 6 160.194 142.645 112.913 1 51.23 ? H82 NAG 604 A 1 
HETATM 24 H H83 NAG . . . H 6 161.738 142.968 112.685 1 51.23 ? H83 NAG 604 A 1 
HETATM 25 H HN2 NAG . . . H 6 162.394 145.092 113.866 1 51.23 ? HN2 NAG 604 A 1 
HETATM 26 H HO3 NAG . . . H 6 163.562 146.326 112.137 1 51.23 ? HO3 NAG 604 A 1 
HETATM 27 H HO4 NAG . . . H 6 164.381 149.494 112.683 1 51.23 ? HO4 NAG 604 A 1 
HETATM 28 H HO6 NAG . . . H 6 159.953 150.583 115.557 1 51.23 ? HO6 NAG 604 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           28 
#