data_7U8G
#
_model_server_result.job_id            BojcaIKV4Gx04CfxgBb5yg 
_model_server_result.datetime_utc      '2024-11-04 22:42:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7u8g 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":606}' 
#
_entry.id    7U8G 
#
_exptl.entry_id    7U8G 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7U8G 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7U8G 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 J N N 
? 7 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 538 A CYS 244 1_555 A SG CYS 551 A CYS 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 C SG CYS 21 D CYS 21 1_555 C SG CYS 95 D CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf3 C SG CYS 35 D CYS 35 1_555 C SG CYS 50 D CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 D SG CYS 23 E CYS 23 1_555 D SG CYS 88 E CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 A ND2 ASN 426 A ASN 132 1_555 I C1 NAG . A NAG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale2 A ND2 ASN 443 A ASN 149 1_555 H C1 NAG . A NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale3 A ND2 ASN 534 A ASN 240 1_555 G C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
metalc ? metalc1 A NE2 HIS 395 A HIS 101 1_555 J FE HEM . A HEM 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc2 A NE2 HIS 409 A HIS 115 1_555 K FE HEM . A HEM 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc3 A NE2 HIS 503 A HIS 209 1_555 J FE HEM . A HEM 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? 
metalc ? metalc4 A NE2 HIS 516 A HIS 222 1_555 K FE HEM . A HEM 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     7U8G 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 POV A 1 601 5 POV POV . 
F 5 POV A 1 602 8 POV POV . 
G 6 NAG A 1 603 9 NAG NAG . 
H 6 NAG A 1 604 10 NAG NAG . 
I 6 NAG A 1 605 11 NAG NAG . 
J 7 HEM A 1 606 1605 HEM HEM . 
K 7 HEM A 1 607 1606 HEM HEM . 
L 5 POV B 1 201 6 POV POV . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . J 7 144.04 145.612 165.079 1 28.23 ? CHA HEM 606 A 1 
HETATM 2 C CHB HEM . . . J 7 145.645 145.205 160.521 1 28.23 ? CHB HEM 606 A 1 
HETATM 3 C CHC HEM . . . J 7 142.04 142.112 159.535 1 28.23 ? CHC HEM 606 A 1 
HETATM 4 C CHD HEM . . . J 7 140.396 142.573 164.083 1 28.23 ? CHD HEM 606 A 1 
HETATM 5 C C1A HEM . . . J 7 144.81 145.735 163.946 1 28.23 ? C1A HEM 606 A 1 
HETATM 6 C C2A HEM . . . J 7 146.063 146.453 163.849 1 28.23 ? C2A HEM 606 A 1 
HETATM 7 C C3A HEM . . . J 7 146.504 146.343 162.597 1 28.23 ? C3A HEM 606 A 1 
HETATM 8 C C4A HEM . . . J 7 145.551 145.549 161.85 1 28.23 ? C4A HEM 606 A 1 
HETATM 9 C CMA HEM . . . J 7 147.803 146.957 162.038 1 28.23 ? CMA HEM 606 A 1 
HETATM 10 C CAA HEM . . . J 7 146.75 147.216 165 1 28.23 ? CAA HEM 606 A 1 
HETATM 11 C CBA HEM . . . J 7 147.988 146.459 165.465 1 28.23 ? CBA HEM 606 A 1 
HETATM 12 C CGA HEM . . . J 7 148.651 147.231 166.574 1 28.23 ? CGA HEM 606 A 1 
HETATM 13 O O1A HEM . . . J 7 149.824 146.918 166.903 1 28.23 ? O1A HEM 606 A 1 
HETATM 14 O O2A HEM . . . J 7 148.014 148.164 167.125 1 28.23 ? O2A HEM 606 A 1 
HETATM 15 C C1B HEM . . . J 7 144.774 144.385 159.839 1 28.23 ? C1B HEM 606 A 1 
HETATM 16 C C2B HEM . . . J 7 144.771 144.153 158.413 1 28.23 ? C2B HEM 606 A 1 
HETATM 17 C C3B HEM . . . J 7 143.781 143.311 158.122 1 28.23 ? C3B HEM 606 A 1 
HETATM 18 C C4B HEM . . . J 7 143.113 142.962 159.368 1 28.23 ? C4B HEM 606 A 1 
HETATM 19 C CMB HEM . . . J 7 145.741 144.779 157.393 1 28.23 ? CMB HEM 606 A 1 
HETATM 20 C CAB HEM . . . J 7 143.478 142.824 156.685 1 28.23 ? CAB HEM 606 A 1 
HETATM 21 C CBB HEM . . . J 7 142.352 142.176 156.369 1 28.23 ? CBB HEM 606 A 1 
HETATM 22 C C1C HEM . . . J 7 141.293 141.955 160.684 1 28.23 ? C1C HEM 606 A 1 
HETATM 23 C C2C HEM . . . J 7 140.153 141.074 160.843 1 28.23 ? C2C HEM 606 A 1 
HETATM 24 C C3C HEM . . . J 7 139.697 141.201 162.095 1 28.23 ? C3C HEM 606 A 1 
HETATM 25 C C4C HEM . . . J 7 140.535 142.164 162.776 1 28.23 ? C4C HEM 606 A 1 
HETATM 26 C CMC HEM . . . J 7 139.589 140.163 159.734 1 28.23 ? CMC HEM 606 A 1 
HETATM 27 C CAC HEM . . . J 7 138.504 140.474 162.758 1 28.23 ? CAC HEM 606 A 1 
HETATM 28 C CBC HEM . . . J 7 137.827 139.505 162.134 1 28.23 ? CBC HEM 606 A 1 
HETATM 29 C C1D HEM . . . J 7 141.266 143.394 164.765 1 28.23 ? C1D HEM 606 A 1 
HETATM 30 C C2D HEM . . . J 7 141.243 143.678 166.184 1 28.23 ? C2D HEM 606 A 1 
HETATM 31 C C3D HEM . . . J 7 142.248 144.51 166.462 1 28.23 ? C3D HEM 606 A 1 
HETATM 32 C C4D HEM . . . J 7 142.945 144.792 165.225 1 28.23 ? C4D HEM 606 A 1 
HETATM 33 C CMD HEM . . . J 7 140.228 143.109 167.194 1 28.23 ? CMD HEM 606 A 1 
HETATM 34 C CAD HEM . . . J 7 142.596 145.085 167.852 1 28.23 ? CAD HEM 606 A 1 
HETATM 35 C CBD HEM . . . J 7 144.027 144.717 168.228 1 28.23 ? CBD HEM 606 A 1 
HETATM 36 C CGD HEM . . . J 7 144.329 145.245 169.605 1 28.23 ? CGD HEM 606 A 1 
HETATM 37 O O1D HEM . . . J 7 143.411 145.826 170.238 1 28.23 ? O1D HEM 606 A 1 
HETATM 38 O O2D HEM . . . J 7 145.485 145.086 170.071 1 28.23 ? O2D HEM 606 A 1 
HETATM 39 N NA HEM . . . J 7 144.528 145.193 162.707 1 28.23 ? NA HEM 606 A 1 
HETATM 40 N NB HEM . . . J 7 143.748 143.643 160.391 1 28.23 ? NB HEM 606 A 1 
HETATM 41 N NC HEM . . . J 7 141.495 142.603 161.886 1 28.23 ? NC HEM 606 A 1 
HETATM 42 N ND HEM . . . J 7 142.321 144.093 164.21 1 28.23 ? ND HEM 606 A 1 
HETATM 43 FE FE HEM . . . J 7 142.938 143.986 162.255 1 28.23 ? FE HEM 606 A 1 
HETATM 44 H HHB HEM . . . J 7 146.332 145.661 159.992 1 28.23 ? HHB HEM 606 A 1 
HETATM 45 H HHC HEM . . . J 7 141.953 141.397 158.871 1 28.23 ? HHC HEM 606 A 1 
HETATM 46 H HHD HEM . . . J 7 139.653 142.189 164.594 1 28.23 ? HHD HEM 606 A 1 
HETATM 47 H HMA HEM . . . J 7 147.737 147.935 162.064 1 28.23 ? HMA HEM 606 A 1 
HETATM 48 H HMAA HEM . . . J 7 148.564 146.669 162.581 1 28.23 ? HMAA HEM 606 A 1 
HETATM 49 H HMAB HEM . . . J 7 147.932 146.665 161.111 1 28.23 ? HMAB HEM 606 A 1 
HETATM 50 H HAA HEM . . . J 7 147.011 148.098 164.69 1 28.23 ? HAA HEM 606 A 1 
HETATM 51 H HAAA HEM . . . J 7 146.131 147.306 165.741 1 28.23 ? HAAA HEM 606 A 1 
HETATM 52 H HBA HEM . . . J 7 147.728 145.583 165.792 1 28.23 ? HBA HEM 606 A 1 
HETATM 53 H HBAA HEM . . . J 7 148.608 146.358 164.728 1 28.23 ? HBAA HEM 606 A 1 
HETATM 54 H HMB HEM . . . J 7 145.289 144.899 156.544 1 28.23 ? HMB HEM 606 A 1 
HETATM 55 H HMBA HEM . . . J 7 146.043 145.64 157.723 1 28.23 ? HMBA HEM 606 A 1 
HETATM 56 H HMBB HEM . . . J 7 146.504 144.194 157.275 1 28.23 ? HMBB HEM 606 A 1 
HETATM 57 H HAB HEM . . . J 7 144.134 142.967 156 1 28.23 ? HAB HEM 606 A 1 
HETATM 58 H HBB HEM . . . J 7 142.162 142.007 155.434 1 28.23 ? HBB HEM 606 A 1 
HETATM 59 H HBBA HEM . . . J 7 141.623 142.139 157.004 1 28.23 ? HBBA HEM 606 A 1 
HETATM 60 H HMC HEM . . . J 7 139.751 139.236 159.967 1 28.23 ? HMC HEM 606 A 1 
HETATM 61 H HMCA HEM . . . J 7 140.027 140.363 158.892 1 28.23 ? HMCA HEM 606 A 1 
HETATM 62 H HMCB HEM . . . J 7 138.635 140.312 159.647 1 28.23 ? HMCB HEM 606 A 1 
HETATM 63 H HAC HEM . . . J 7 138.244 140.725 163.647 1 28.23 ? HAC HEM 606 A 1 
HETATM 64 H HBC HEM . . . J 7 138.321 138.831 161.643 1 28.23 ? HBC HEM 606 A 1 
HETATM 65 H HBCA HEM . . . J 7 136.938 139.282 162.453 1 28.23 ? HBCA HEM 606 A 1 
HETATM 66 H HMD HEM . . . J 7 139.943 142.219 166.899 1 28.23 ? HMD HEM 606 A 1 
HETATM 67 H HMDA HEM . . . J 7 140.643 143.042 168.079 1 28.23 ? HMDA HEM 606 A 1 
HETATM 68 H HMDB HEM . . . J 7 139.449 143.7 167.239 1 28.23 ? HMDB HEM 606 A 1 
HETATM 69 H HAD HEM . . . J 7 142.511 146.051 167.829 1 28.23 ? HAD HEM 606 A 1 
HETATM 70 H HADA HEM . . . J 7 141.988 144.726 168.516 1 28.23 ? HADA HEM 606 A 1 
HETATM 71 H HBD HEM . . . J 7 144.126 143.753 168.223 1 28.23 ? HBD HEM 606 A 1 
HETATM 72 H HBDA HEM . . . J 7 144.646 145.11 167.594 1 28.23 ? HBDA HEM 606 A 1 
HETATM 73 H HHA HEM . . . J 7 144.215 146.247 165.804 1 28.23 ? HHA HEM 606 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           73 
#