data_7U8G
#
_model_server_result.job_id            tTA7s0NO3cJdHeQP53UWEA 
_model_server_result.datetime_utc      '2024-11-04 22:44:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7u8g 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":607}' 
#
_entry.id    7U8G 
#
_exptl.entry_id    7U8G 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7U8G 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7U8G 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 J N N 
? 7 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 538 A CYS 244 1_555 A SG CYS 551 A CYS 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 C SG CYS 21 D CYS 21 1_555 C SG CYS 95 D CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf3 C SG CYS 35 D CYS 35 1_555 C SG CYS 50 D CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 D SG CYS 23 E CYS 23 1_555 D SG CYS 88 E CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 A ND2 ASN 426 A ASN 132 1_555 I C1 NAG . A NAG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale2 A ND2 ASN 443 A ASN 149 1_555 H C1 NAG . A NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale3 A ND2 ASN 534 A ASN 240 1_555 G C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
metalc ? metalc1 A NE2 HIS 395 A HIS 101 1_555 J FE HEM . A HEM 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc2 A NE2 HIS 409 A HIS 115 1_555 K FE HEM . A HEM 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc3 A NE2 HIS 503 A HIS 209 1_555 J FE HEM . A HEM 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? 
metalc ? metalc4 A NE2 HIS 516 A HIS 222 1_555 K FE HEM . A HEM 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     7U8G 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 POV A 1 601 5 POV POV . 
F 5 POV A 1 602 8 POV POV . 
G 6 NAG A 1 603 9 NAG NAG . 
H 6 NAG A 1 604 10 NAG NAG . 
I 6 NAG A 1 605 11 NAG NAG . 
J 7 HEM A 1 606 1605 HEM HEM . 
K 7 HEM A 1 607 1606 HEM HEM . 
L 5 POV B 1 201 6 POV POV . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . K 7 145.427 143.794 140.809 1 22.26 ? CHA HEM 607 A 1 
HETATM 2 C CHB HEM . . . K 7 145.812 138.97 140.465 1 22.26 ? CHB HEM 607 A 1 
HETATM 3 C CHC HEM . . . K 7 144.62 138.558 145.142 1 22.26 ? CHC HEM 607 A 1 
HETATM 4 C CHD HEM . . . K 7 144.162 143.379 145.484 1 22.26 ? CHD HEM 607 A 1 
HETATM 5 C C1A HEM . . . K 7 145.67 142.531 140.314 1 22.26 ? C1A HEM 607 A 1 
HETATM 6 C C2A HEM . . . K 7 146.144 142.206 138.985 1 22.26 ? C2A HEM 607 A 1 
HETATM 7 C C3A HEM . . . K 7 146.251 140.881 138.894 1 22.26 ? C3A HEM 607 A 1 
HETATM 8 C C4A HEM . . . K 7 145.845 140.31 140.158 1 22.26 ? C4A HEM 607 A 1 
HETATM 9 C CMA HEM . . . K 7 146.723 140.093 137.656 1 22.26 ? CMA HEM 607 A 1 
HETATM 10 C CAA HEM . . . K 7 146.479 143.214 137.868 1 22.26 ? CAA HEM 607 A 1 
HETATM 11 C CBA HEM . . . K 7 147.862 143.793 138.126 1 22.26 ? CBA HEM 607 A 1 
HETATM 12 C CGA HEM . . . K 7 148.25 144.687 136.983 1 22.26 ? CGA HEM 607 A 1 
HETATM 13 O O1A HEM . . . K 7 147.466 144.784 136.007 1 22.26 ? O1A HEM 607 A 1 
HETATM 14 O O2A HEM . . . K 7 149.343 145.302 137.05 1 22.26 ? O2A HEM 607 A 1 
HETATM 15 C C1B HEM . . . K 7 145.499 138.434 141.692 1 22.26 ? C1B HEM 607 A 1 
HETATM 16 C C2B HEM . . . K 7 145.418 137.025 142.003 1 22.26 ? C2B HEM 607 A 1 
HETATM 17 C C3B HEM . . . K 7 145.083 136.908 143.294 1 22.26 ? C3B HEM 607 A 1 
HETATM 18 C C4B HEM . . . K 7 144.95 138.244 143.841 1 22.26 ? C4B HEM 607 A 1 
HETATM 19 C CMB HEM . . . K 7 145.673 135.897 140.981 1 22.26 ? CMB HEM 607 A 1 
HETATM 20 C CAB HEM . . . K 7 144.878 135.618 144.122 1 22.26 ? CAB HEM 607 A 1 
HETATM 21 C CBB HEM . . . K 7 145.26 134.415 143.682 1 22.26 ? CBB HEM 607 A 1 
HETATM 22 C C1C HEM . . . K 7 144.441 139.823 145.657 1 22.26 ? C1C HEM 607 A 1 
HETATM 23 C C2C HEM . . . K 7 144.212 140.149 147.047 1 22.26 ? C2C HEM 607 A 1 
HETATM 24 C C3C HEM . . . K 7 144.09 141.472 147.159 1 22.26 ? C3C HEM 607 A 1 
HETATM 25 C C4C HEM . . . K 7 144.228 142.044 145.831 1 22.26 ? C4C HEM 607 A 1 
HETATM 26 C CMC HEM . . . K 7 144.134 139.128 148.201 1 22.26 ? CMC HEM 607 A 1 
HETATM 27 C CAC HEM . . . K 7 143.833 142.218 148.488 1 22.26 ? CAC HEM 607 A 1 
HETATM 28 C CBC HEM . . . K 7 143.843 143.552 148.557 1 22.26 ? CBC HEM 607 A 1 
HETATM 29 C C1D HEM . . . K 7 144.519 143.909 144.264 1 22.26 ? C1D HEM 607 A 1 
HETATM 30 C C2D HEM . . . K 7 144.68 145.314 143.963 1 22.26 ? C2D HEM 607 A 1 
HETATM 31 C C3D HEM . . . K 7 145.028 145.425 142.679 1 22.26 ? C3D HEM 607 A 1 
HETATM 32 C C4D HEM . . . K 7 145.097 144.098 142.112 1 22.26 ? C4D HEM 607 A 1 
HETATM 33 C CMD HEM . . . K 7 144.487 146.469 144.966 1 22.26 ? CMD HEM 607 A 1 
HETATM 34 C CAD HEM . . . K 7 145.315 146.725 141.905 1 22.26 ? CAD HEM 607 A 1 
HETATM 35 C CBD HEM . . . K 7 146.823 146.851 141.737 1 22.26 ? CBD HEM 607 A 1 
HETATM 36 C CGD HEM . . . K 7 147.142 148.182 141.121 1 22.26 ? CGD HEM 607 A 1 
HETATM 37 O O1D HEM . . . K 7 148.338 148.564 141.127 1 22.26 ? O1D HEM 607 A 1 
HETATM 38 O O2D HEM . . . K 7 146.201 148.857 140.633 1 22.26 ? O2D HEM 607 A 1 
HETATM 39 N NA HEM . . . K 7 145.496 141.345 141.003 1 22.26 ? NA HEM 607 A 1 
HETATM 40 N NB HEM . . . K 7 145.208 139.15 142.834 1 22.26 ? NB HEM 607 A 1 
HETATM 41 N NC HEM . . . K 7 144.441 141.004 144.944 1 22.26 ? NC HEM 607 A 1 
HETATM 42 N ND HEM . . . K 7 144.776 143.196 143.109 1 22.26 ? ND HEM 607 A 1 
HETATM 43 FE FE HEM . . . K 7 144.837 141.161 142.94 1 22.26 ? FE HEM 607 A 1 
HETATM 44 H HHB HEM . . . K 7 145.972 138.341 139.731 1 22.26 ? HHB HEM 607 A 1 
HETATM 45 H HHC HEM . . . K 7 144.527 137.809 145.767 1 22.26 ? HHC HEM 607 A 1 
HETATM 46 H HHD HEM . . . K 7 143.619 143.953 146.062 1 22.26 ? HHD HEM 607 A 1 
HETATM 47 H HMA HEM . . . K 7 146.744 139.136 137.864 1 22.26 ? HMA HEM 607 A 1 
HETATM 48 H HMAA HEM . . . K 7 146.106 140.252 136.911 1 22.26 ? HMAA HEM 607 A 1 
HETATM 49 H HMAB HEM . . . K 7 147.621 140.393 137.406 1 22.26 ? HMAB HEM 607 A 1 
HETATM 50 H HAA HEM . . . K 7 146.47 142.763 137.009 1 22.26 ? HAA HEM 607 A 1 
HETATM 51 H HAAA HEM . . . K 7 145.822 143.928 137.867 1 22.26 ? HAAA HEM 607 A 1 
HETATM 52 H HBA HEM . . . K 7 147.849 144.308 138.949 1 22.26 ? HBA HEM 607 A 1 
HETATM 53 H HBAA HEM . . . K 7 148.506 143.072 138.207 1 22.26 ? HBAA HEM 607 A 1 
HETATM 54 H HMB HEM . . . K 7 145.079 135.152 141.155 1 22.26 ? HMB HEM 607 A 1 
HETATM 55 H HMBA HEM . . . K 7 145.505 136.234 140.087 1 22.26 ? HMBA HEM 607 A 1 
HETATM 56 H HMBB HEM . . . K 7 146.596 135.606 141.043 1 22.26 ? HMBB HEM 607 A 1 
HETATM 57 H HAB HEM . . . K 7 144.408 135.676 144.957 1 22.26 ? HAB HEM 607 A 1 
HETATM 58 H HBB HEM . . . K 7 144.879 133.615 144.078 1 22.26 ? HBB HEM 607 A 1 
HETATM 59 H HBBA HEM . . . K 7 145.983 134.335 143.042 1 22.26 ? HBBA HEM 607 A 1 
HETATM 60 H HMC HEM . . . K 7 143.514 138.421 147.965 1 22.26 ? HMC HEM 607 A 1 
HETATM 61 H HMCA HEM . . . K 7 145.01 138.745 148.352 1 22.26 ? HMCA HEM 607 A 1 
HETATM 62 H HMCB HEM . . . K 7 143.832 139.565 149.012 1 22.26 ? HMCB HEM 607 A 1 
HETATM 63 H HAC HEM . . . K 7 143.595 141.716 149.271 1 22.26 ? HAC HEM 607 A 1 
HETATM 64 H HBC HEM . . . K 7 144.482 144.045 148.022 1 22.26 ? HBC HEM 607 A 1 
HETATM 65 H HBCA HEM . . . K 7 143.469 143.98 149.343 1 22.26 ? HBCA HEM 607 A 1 
HETATM 66 H HMD HEM . . . K 7 143.647 146.34 145.455 1 22.26 ? HMD HEM 607 A 1 
HETATM 67 H HMDA HEM . . . K 7 145.234 146.48 145.599 1 22.26 ? HMDA HEM 607 A 1 
HETATM 68 H HMDB HEM . . . K 7 144.458 147.321 144.487 1 22.26 ? HMDB HEM 607 A 1 
HETATM 69 H HAD HEM . . . K 7 144.894 146.684 141.032 1 22.26 ? HAD HEM 607 A 1 
HETATM 70 H HADA HEM . . . K 7 144.975 147.489 142.394 1 22.26 ? HADA HEM 607 A 1 
HETATM 71 H HBD HEM . . . K 7 147.252 146.784 142.605 1 22.26 ? HBD HEM 607 A 1 
HETATM 72 H HBDA HEM . . . K 7 147.145 146.141 141.161 1 22.26 ? HBDA HEM 607 A 1 
HETATM 73 H HHA HEM . . . K 7 145.638 144.548 140.219 1 22.26 ? HHA HEM 607 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           73 
#