data_7U8Y # _model_server_result.job_id g4A-xWC8mLsZJBttEVoTEA _model_server_result.datetime_utc '2024-11-28 14:51:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7u8y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 7U8Y # _exptl.entry_id 7U8Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 320.274 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ALIZARIN RED' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7U8Y _cell.length_a 127.555 _cell.length_b 127.555 _cell.length_c 80.01 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7U8Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A CD1 ILE 79 A ILE 84 1_555 D C7 AZN . A AZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.522 ? metalc ? metalc1 A OD1 ASP 13 A ASP 18 1_555 E MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc2 A OD2 ASP 13 A ASP 18 1_555 F MN MN . A MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc3 A OE2 GLU 15 A GLU 20 1_555 F MN MN . A MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc4 A OD2 ASP 195 A ASP 200 1_555 F MN MN . A MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc5 D O6 AZN . A AZN 302 1_555 E MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc6 D O3 AZN . A AZN 302 1_555 E MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc7 D O3 AZN . A AZN 302 1_555 F MN MN . A MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc8 D O1 AZN . A AZN 302 1_555 F MN MN . A MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc9 E MN MN . A MN 303 1_555 K O HOH . A HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc ? metalc10 E MN MN . A MN 303 1_555 K O HOH . A HOH 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc11 E MN MN . A MN 303 1_555 K O HOH . A HOH 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? metalc ? metalc12 B OD2 ASP 13 B ASP 18 1_555 I MN MN . B MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc13 B OD1 ASP 13 B ASP 18 1_555 J MN MN . B MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc14 B OE2 GLU 15 B GLU 20 1_555 I MN MN . B MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc15 B OD2 ASP 195 B ASP 200 1_555 I MN MN . B MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc16 G O3 AZN . B AZN 301 1_555 I MN MN . B MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc17 G O1 AZN . B AZN 301 1_555 I MN MN . B MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc18 G O3 AZN . B AZN 301 1_555 J MN MN . B MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc19 G O5 AZN . B AZN 301 1_555 J MN MN . B MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc20 J MN MN . B MN 304 1_555 L O HOH . B HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc21 J MN MN . B MN 304 1_555 L O HOH . B HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc22 J MN MN . B MN 304 1_555 L O HOH . B HOH 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? # _chem_comp.formula 'C14 H8 O7 S' _chem_comp.formula_weight 320.274 _chem_comp.id AZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ALIZARIN RED' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C4 AZN doub 70 n y C2 C5 AZN sing 71 n y C2 C1 AZN sing 72 n n C3 C1 AZN sing 73 n n C3 C6 AZN doub 74 n y C3 C7 AZN sing 75 n y C4 C8 AZN sing 76 n n C4 C9 AZN sing 77 n y C5 C10 AZN doub 78 n y C5 O1 AZN sing 79 n n C8 C6 AZN sing 80 n n C8 O2 AZN doub 81 n n C9 C13 AZN doub 82 n y C9 H9 AZN sing 83 n n C10 C13 AZN sing 84 n y C10 O3 AZN sing 85 n n C11 C14 AZN doub 86 n y C11 C6 AZN sing 87 n y C11 H11 AZN sing 88 n n C12 C14 AZN sing 89 n y C12 C7 AZN doub 90 n y C12 H12 AZN sing 91 n n C14 H14 AZN sing 92 n n C13 S1 AZN sing 93 n n C1 O AZN doub 94 n n C7 H7 AZN sing 95 n n O6 S1 AZN sing 96 n n O6 H6 AZN sing 97 n n O4 S1 AZN doub 98 n n O3 H3 AZN sing 99 n n O1 H1 AZN sing 100 n n O5 S1 AZN doub 101 n n # _atom_sites.entry_id 7U8Y _atom_sites.fract_transf_matrix[1][1] 0.00784 _atom_sites.fract_transf_matrix[1][2] 0.004526 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009053 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012498 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AZN A 1 301 3 AZN UNL . D 2 AZN A 1 302 4 AZN UNL . E 3 MN A 1 303 3 MN MN . F 3 MN A 1 304 4 MN MN . G 2 AZN B 1 301 1 AZN UNL . H 2 AZN B 1 302 2 AZN UNL . I 3 MN B 1 303 1 MN MN . J 3 MN B 1 304 2 MN MN . K 4 HOH A 1 401 123 HOH HOH . K 4 HOH A 2 402 6 HOH HOH . K 4 HOH A 3 403 143 HOH HOH . K 4 HOH A 4 404 92 HOH HOH . K 4 HOH A 5 405 45 HOH HOH . K 4 HOH A 6 406 83 HOH HOH . K 4 HOH A 7 407 33 HOH HOH . K 4 HOH A 8 408 29 HOH HOH . K 4 HOH A 9 409 12 HOH HOH . K 4 HOH A 10 410 72 HOH HOH . K 4 HOH A 11 411 10 HOH HOH . K 4 HOH A 12 412 27 HOH HOH . K 4 HOH A 13 413 66 HOH HOH . K 4 HOH A 14 414 51 HOH HOH . K 4 HOH A 15 415 18 HOH HOH . K 4 HOH A 16 416 117 HOH HOH . K 4 HOH A 17 417 35 HOH HOH . K 4 HOH A 18 418 73 HOH HOH . K 4 HOH A 19 419 24 HOH HOH . K 4 HOH A 20 420 106 HOH HOH . K 4 HOH A 21 421 26 HOH HOH . K 4 HOH A 22 422 124 HOH HOH . K 4 HOH A 23 423 49 HOH HOH . K 4 HOH A 24 424 105 HOH HOH . K 4 HOH A 25 425 149 HOH HOH . K 4 HOH A 26 426 8 HOH HOH . K 4 HOH A 27 427 7 HOH HOH . K 4 HOH A 28 428 114 HOH HOH . K 4 HOH A 29 429 108 HOH HOH . K 4 HOH A 30 430 50 HOH HOH . K 4 HOH A 31 431 28 HOH HOH . K 4 HOH A 32 432 23 HOH HOH . K 4 HOH A 33 433 107 HOH HOH . K 4 HOH A 34 434 93 HOH HOH . K 4 HOH A 35 435 13 HOH HOH . K 4 HOH A 36 436 134 HOH HOH . K 4 HOH A 37 437 132 HOH HOH . K 4 HOH A 38 438 101 HOH HOH . K 4 HOH A 39 439 140 HOH HOH . K 4 HOH A 40 440 80 HOH HOH . K 4 HOH A 41 441 48 HOH HOH . K 4 HOH A 42 442 11 HOH HOH . K 4 HOH A 43 443 14 HOH HOH . K 4 HOH A 44 444 21 HOH HOH . K 4 HOH A 45 445 89 HOH HOH . K 4 HOH A 46 446 144 HOH HOH . K 4 HOH A 47 447 104 HOH HOH . K 4 HOH A 48 448 58 HOH HOH . K 4 HOH A 49 449 111 HOH HOH . K 4 HOH A 50 450 84 HOH HOH . K 4 HOH A 51 451 127 HOH HOH . K 4 HOH A 52 452 138 HOH HOH . K 4 HOH A 53 453 78 HOH HOH . K 4 HOH A 54 454 77 HOH HOH . K 4 HOH A 55 455 98 HOH HOH . L 4 HOH B 1 401 130 HOH HOH . L 4 HOH B 2 402 88 HOH HOH . L 4 HOH B 3 403 67 HOH HOH . L 4 HOH B 4 404 82 HOH HOH . L 4 HOH B 5 405 102 HOH HOH . L 4 HOH B 6 406 87 HOH HOH . L 4 HOH B 7 407 3 HOH HOH . L 4 HOH B 8 408 113 HOH HOH . L 4 HOH B 9 409 16 HOH HOH . L 4 HOH B 10 410 52 HOH HOH . L 4 HOH B 11 411 97 HOH HOH . L 4 HOH B 12 412 31 HOH HOH . L 4 HOH B 13 413 40 HOH HOH . L 4 HOH B 14 414 4 HOH HOH . L 4 HOH B 15 415 1 HOH HOH . L 4 HOH B 16 416 9 HOH HOH . L 4 HOH B 17 417 100 HOH HOH . L 4 HOH B 18 418 76 HOH HOH . L 4 HOH B 19 419 68 HOH HOH . L 4 HOH B 20 420 41 HOH HOH . L 4 HOH B 21 421 64 HOH HOH . L 4 HOH B 22 422 53 HOH HOH . L 4 HOH B 23 423 15 HOH HOH . L 4 HOH B 24 424 120 HOH HOH . L 4 HOH B 25 425 122 HOH HOH . L 4 HOH B 26 426 2 HOH HOH . L 4 HOH B 27 427 55 HOH HOH . L 4 HOH B 28 428 19 HOH HOH . L 4 HOH B 29 429 57 HOH HOH . L 4 HOH B 30 430 34 HOH HOH . L 4 HOH B 31 431 60 HOH HOH . L 4 HOH B 32 432 74 HOH HOH . L 4 HOH B 33 433 95 HOH HOH . L 4 HOH B 34 434 36 HOH HOH . L 4 HOH B 35 435 22 HOH HOH . L 4 HOH B 36 436 141 HOH HOH . L 4 HOH B 37 437 20 HOH HOH . L 4 HOH B 38 438 133 HOH HOH . L 4 HOH B 39 439 5 HOH HOH . L 4 HOH B 40 440 94 HOH HOH . L 4 HOH B 41 441 65 HOH HOH . L 4 HOH B 42 442 38 HOH HOH . L 4 HOH B 43 443 25 HOH HOH . L 4 HOH B 44 444 42 HOH HOH . L 4 HOH B 45 445 69 HOH HOH . L 4 HOH B 46 446 90 HOH HOH . L 4 HOH B 47 447 46 HOH HOH . L 4 HOH B 48 448 147 HOH HOH . L 4 HOH B 49 449 39 HOH HOH . L 4 HOH B 50 450 115 HOH HOH . L 4 HOH B 51 451 56 HOH HOH . L 4 HOH B 52 452 125 HOH HOH . L 4 HOH B 53 453 112 HOH HOH . L 4 HOH B 54 454 71 HOH HOH . L 4 HOH B 55 455 17 HOH HOH . L 4 HOH B 56 456 37 HOH HOH . L 4 HOH B 57 457 43 HOH HOH . L 4 HOH B 58 458 32 HOH HOH . L 4 HOH B 59 459 62 HOH HOH . L 4 HOH B 60 460 109 HOH HOH . L 4 HOH B 61 461 47 HOH HOH . L 4 HOH B 62 462 59 HOH HOH . L 4 HOH B 63 463 145 HOH HOH . L 4 HOH B 64 464 135 HOH HOH . L 4 HOH B 65 465 96 HOH HOH . L 4 HOH B 66 466 118 HOH HOH . L 4 HOH B 67 467 81 HOH HOH . L 4 HOH B 68 468 63 HOH HOH . L 4 HOH B 69 469 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 AZN . . . D 2 -37.335 -14.195 -8.174 1 67.19 ? C2 AZN 302 A 1 HETATM 2 C C3 AZN . . . D 2 -39.67 -15.135 -8.057 1 74.52 ? C3 AZN 302 A 1 HETATM 3 C C4 AZN . . . D 2 -37.546 -13.962 -9.541 1 65.26 ? C4 AZN 302 A 1 HETATM 4 C C5 AZN . . . D 2 -36.04 -13.832 -7.545 1 53.8 ? C5 AZN 302 A 1 HETATM 5 C C8 AZN . . . D 2 -38.808 -14.302 -10.193 1 76.64 ? C8 AZN 302 A 1 HETATM 6 C C9 AZN . . . D 2 -36.528 -13.377 -10.297 1 62.26 ? C9 AZN 302 A 1 HETATM 7 C C10 AZN . . . D 2 -35.039 -13.259 -8.287 1 50.04 ? C10 AZN 302 A 1 HETATM 8 C C11 AZN . . . D 2 -41.099 -15.234 -10.041 1 82.21 ? C11 AZN 302 A 1 HETATM 9 C C12 AZN . . . D 2 -41.949 -16.062 -7.931 1 70.54 ? C12 AZN 302 A 1 HETATM 10 C C14 AZN . . . D 2 -42.132 -15.821 -9.293 1 78.19 ? C14 AZN 302 A 1 HETATM 11 C C13 AZN . . . D 2 -35.292 -13.028 -9.682 1 59.12 ? C13 AZN 302 A 1 HETATM 12 C C1 AZN . . . D 2 -38.374 -14.779 -7.412 1 67.32 ? C1 AZN 302 A 1 HETATM 13 C C6 AZN . . . D 2 -39.867 -14.897 -9.419 1 77.56 ? C6 AZN 302 A 1 HETATM 14 C C7 AZN . . . D 2 -40.706 -15.757 -7.303 1 68.5 ? C7 AZN 302 A 1 HETATM 15 O O6 AZN . . . D 2 -33.594 -10.806 -10.138 1 59.4 ? O6 AZN 302 A 1 HETATM 16 O O4 AZN . . . D 2 -34.769 -11.955 -12.206 1 59.62 ? O4 AZN 302 A 1 HETATM 17 O O3 AZN . . . D 2 -33.814 -12.922 -7.693 1 49.87 ? O3 AZN 302 A 1 HETATM 18 O O1 AZN . . . D 2 -35.822 -14.082 -6.158 1 57.43 ? O1 AZN 302 A 1 HETATM 19 O O5 AZN . . . D 2 -32.851 -13.429 -10.964 1 56.64 ? O5 AZN 302 A 1 HETATM 20 O O AZN . . . D 2 -38.166 -15.015 -6.081 1 55.32 ? O AZN 302 A 1 HETATM 21 O O2 AZN . . . D 2 -38.998 -14.036 -11.606 1 86.58 ? O2 AZN 302 A 1 HETATM 22 S S1 AZN . . . D 2 -34.072 -12.278 -10.768 1 54.12 ? S1 AZN 302 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 22 #