data_7U9C # _model_server_result.job_id 4loFkhvM7KRRINCPtXNVlg _model_server_result.datetime_utc '2024-11-23 21:42:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7u9c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7U9C # _exptl.entry_id 7U9C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7U9C _cell.length_a 124.188 _cell.length_b 124.188 _cell.length_c 83.122 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7U9C _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 36 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 36 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id PLP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PLP _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.429 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLP doub 260 n y N1 C6 PLP sing 261 n y C2 C2A PLP sing 262 n n C2 C3 PLP sing 263 n y C2A H2A1 PLP sing 264 n n C2A H2A2 PLP sing 265 n n C2A H2A3 PLP sing 266 n n C3 O3 PLP sing 267 n n C3 C4 PLP doub 268 n y O3 HO3 PLP sing 269 n n C4 C4A PLP sing 270 n n C4 C5 PLP sing 271 n y C4A O4A PLP doub 272 n n C4A H4A PLP sing 273 n n C5 C6 PLP doub 274 n y C5 C5A PLP sing 275 n n C6 H6 PLP sing 276 n n C5A O4P PLP sing 277 n n C5A H5A1 PLP sing 278 n n C5A H5A2 PLP sing 279 n n O4P P PLP sing 280 n n P O1P PLP doub 281 n n P O2P PLP sing 282 n n P O3P PLP sing 283 n n O2P HOP2 PLP sing 284 n n O3P HOP3 PLP sing 285 n n # _atom_sites.entry_id 7U9C _atom_sites.fract_transf_matrix[1][1] 0.008052 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008052 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012031 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLP A 1 301 306 PLP PLP . C 2 PLP A 1 302 308 PLP PLP . D 3 PO4 A 1 303 1 PO4 PO4 . E 4 HOH A 1 401 51 HOH HOH . E 4 HOH A 2 402 195 HOH HOH . E 4 HOH A 3 403 100 HOH HOH . E 4 HOH A 4 404 60 HOH HOH . E 4 HOH A 5 405 104 HOH HOH . E 4 HOH A 6 406 202 HOH HOH . E 4 HOH A 7 407 117 HOH HOH . E 4 HOH A 8 408 121 HOH HOH . E 4 HOH A 9 409 135 HOH HOH . E 4 HOH A 10 410 26 HOH HOH . E 4 HOH A 11 411 70 HOH HOH . E 4 HOH A 12 412 196 HOH HOH . E 4 HOH A 13 413 133 HOH HOH . E 4 HOH A 14 414 55 HOH HOH . E 4 HOH A 15 415 30 HOH HOH . E 4 HOH A 16 416 36 HOH HOH . E 4 HOH A 17 417 72 HOH HOH . E 4 HOH A 18 418 120 HOH HOH . E 4 HOH A 19 419 111 HOH HOH . E 4 HOH A 20 420 52 HOH HOH . E 4 HOH A 21 421 173 HOH HOH . E 4 HOH A 22 422 76 HOH HOH . E 4 HOH A 23 423 188 HOH HOH . E 4 HOH A 24 424 4 HOH HOH . E 4 HOH A 25 425 142 HOH HOH . E 4 HOH A 26 426 8 HOH HOH . E 4 HOH A 27 427 44 HOH HOH . E 4 HOH A 28 428 45 HOH HOH . E 4 HOH A 29 429 125 HOH HOH . E 4 HOH A 30 430 25 HOH HOH . E 4 HOH A 31 431 96 HOH HOH . E 4 HOH A 32 432 64 HOH HOH . E 4 HOH A 33 433 87 HOH HOH . E 4 HOH A 34 434 153 HOH HOH . E 4 HOH A 35 435 79 HOH HOH . E 4 HOH A 36 436 190 HOH HOH . E 4 HOH A 37 437 140 HOH HOH . E 4 HOH A 38 438 13 HOH HOH . E 4 HOH A 39 439 20 HOH HOH . E 4 HOH A 40 440 18 HOH HOH . E 4 HOH A 41 441 149 HOH HOH . E 4 HOH A 42 442 198 HOH HOH . E 4 HOH A 43 443 59 HOH HOH . E 4 HOH A 44 444 56 HOH HOH . E 4 HOH A 45 445 129 HOH HOH . E 4 HOH A 46 446 12 HOH HOH . E 4 HOH A 47 447 94 HOH HOH . E 4 HOH A 48 448 130 HOH HOH . E 4 HOH A 49 449 34 HOH HOH . E 4 HOH A 50 450 74 HOH HOH . E 4 HOH A 51 451 33 HOH HOH . E 4 HOH A 52 452 181 HOH HOH . E 4 HOH A 53 453 19 HOH HOH . E 4 HOH A 54 454 15 HOH HOH . E 4 HOH A 55 455 1 HOH HOH . E 4 HOH A 56 456 66 HOH HOH . E 4 HOH A 57 457 23 HOH HOH . E 4 HOH A 58 458 98 HOH HOH . E 4 HOH A 59 459 2 HOH HOH . E 4 HOH A 60 460 127 HOH HOH . E 4 HOH A 61 461 109 HOH HOH . E 4 HOH A 62 462 114 HOH HOH . E 4 HOH A 63 463 65 HOH HOH . E 4 HOH A 64 464 28 HOH HOH . E 4 HOH A 65 465 82 HOH HOH . E 4 HOH A 66 466 10 HOH HOH . E 4 HOH A 67 467 50 HOH HOH . E 4 HOH A 68 468 7 HOH HOH . E 4 HOH A 69 469 91 HOH HOH . E 4 HOH A 70 470 6 HOH HOH . E 4 HOH A 71 471 41 HOH HOH . E 4 HOH A 72 472 150 HOH HOH . E 4 HOH A 73 473 29 HOH HOH . E 4 HOH A 74 474 88 HOH HOH . E 4 HOH A 75 475 48 HOH HOH . E 4 HOH A 76 476 42 HOH HOH . E 4 HOH A 77 477 54 HOH HOH . E 4 HOH A 78 478 31 HOH HOH . E 4 HOH A 79 479 53 HOH HOH . E 4 HOH A 80 480 9 HOH HOH . E 4 HOH A 81 481 63 HOH HOH . E 4 HOH A 82 482 17 HOH HOH . E 4 HOH A 83 483 46 HOH HOH . E 4 HOH A 84 484 148 HOH HOH . E 4 HOH A 85 485 165 HOH HOH . E 4 HOH A 86 486 43 HOH HOH . E 4 HOH A 87 487 47 HOH HOH . E 4 HOH A 88 488 192 HOH HOH . E 4 HOH A 89 489 37 HOH HOH . E 4 HOH A 90 490 69 HOH HOH . E 4 HOH A 91 491 80 HOH HOH . E 4 HOH A 92 492 81 HOH HOH . E 4 HOH A 93 493 95 HOH HOH . E 4 HOH A 94 494 3 HOH HOH . E 4 HOH A 95 495 24 HOH HOH . E 4 HOH A 96 496 122 HOH HOH . E 4 HOH A 97 497 116 HOH HOH . E 4 HOH A 98 498 40 HOH HOH . E 4 HOH A 99 499 105 HOH HOH . E 4 HOH A 100 500 61 HOH HOH . E 4 HOH A 101 501 93 HOH HOH . E 4 HOH A 102 502 143 HOH HOH . E 4 HOH A 103 503 141 HOH HOH . E 4 HOH A 104 504 115 HOH HOH . E 4 HOH A 105 505 92 HOH HOH . E 4 HOH A 106 506 102 HOH HOH . E 4 HOH A 107 507 68 HOH HOH . E 4 HOH A 108 508 197 HOH HOH . E 4 HOH A 109 509 136 HOH HOH . E 4 HOH A 110 510 178 HOH HOH . E 4 HOH A 111 511 167 HOH HOH . E 4 HOH A 112 512 84 HOH HOH . E 4 HOH A 113 513 27 HOH HOH . E 4 HOH A 114 514 49 HOH HOH . E 4 HOH A 115 515 85 HOH HOH . E 4 HOH A 116 516 119 HOH HOH . E 4 HOH A 117 517 137 HOH HOH . E 4 HOH A 118 518 99 HOH HOH . E 4 HOH A 119 519 89 HOH HOH . E 4 HOH A 120 520 180 HOH HOH . E 4 HOH A 121 521 78 HOH HOH . E 4 HOH A 122 522 16 HOH HOH . E 4 HOH A 123 523 108 HOH HOH . E 4 HOH A 124 524 184 HOH HOH . E 4 HOH A 125 525 170 HOH HOH . E 4 HOH A 126 526 123 HOH HOH . E 4 HOH A 127 527 101 HOH HOH . E 4 HOH A 128 528 139 HOH HOH . E 4 HOH A 129 529 126 HOH HOH . E 4 HOH A 130 530 163 HOH HOH . E 4 HOH A 131 531 161 HOH HOH . E 4 HOH A 132 532 199 HOH HOH . E 4 HOH A 133 533 164 HOH HOH . E 4 HOH A 134 534 187 HOH HOH . E 4 HOH A 135 535 97 HOH HOH . E 4 HOH A 136 536 131 HOH HOH . E 4 HOH A 137 537 166 HOH HOH . E 4 HOH A 138 538 162 HOH HOH . E 4 HOH A 139 539 201 HOH HOH . E 4 HOH A 140 540 147 HOH HOH . E 4 HOH A 141 541 11 HOH HOH . E 4 HOH A 142 542 189 HOH HOH . E 4 HOH A 143 543 175 HOH HOH . E 4 HOH A 144 544 67 HOH HOH . E 4 HOH A 145 545 156 HOH HOH . E 4 HOH A 146 546 157 HOH HOH . E 4 HOH A 147 547 62 HOH HOH . E 4 HOH A 148 548 77 HOH HOH . E 4 HOH A 149 549 174 HOH HOH . E 4 HOH A 150 550 200 HOH HOH . E 4 HOH A 151 551 151 HOH HOH . E 4 HOH A 152 552 138 HOH HOH . E 4 HOH A 153 553 155 HOH HOH . E 4 HOH A 154 554 193 HOH HOH . E 4 HOH A 155 555 112 HOH HOH . E 4 HOH A 156 556 177 HOH HOH . E 4 HOH A 157 557 124 HOH HOH . E 4 HOH A 158 558 152 HOH HOH . E 4 HOH A 159 559 179 HOH HOH . E 4 HOH A 160 560 113 HOH HOH . E 4 HOH A 161 561 71 HOH HOH . E 4 HOH A 162 562 58 HOH HOH . E 4 HOH A 163 563 191 HOH HOH . E 4 HOH A 164 564 134 HOH HOH . E 4 HOH A 165 565 35 HOH HOH . E 4 HOH A 166 566 132 HOH HOH . E 4 HOH A 167 567 75 HOH HOH . E 4 HOH A 168 568 169 HOH HOH . E 4 HOH A 169 569 144 HOH HOH . E 4 HOH A 170 570 107 HOH HOH . E 4 HOH A 171 571 146 HOH HOH . E 4 HOH A 172 572 83 HOH HOH . E 4 HOH A 173 573 194 HOH HOH . E 4 HOH A 174 574 172 HOH HOH . E 4 HOH A 175 575 154 HOH HOH . E 4 HOH A 176 576 110 HOH HOH . E 4 HOH A 177 577 118 HOH HOH . E 4 HOH A 178 578 186 HOH HOH . E 4 HOH A 179 579 183 HOH HOH . E 4 HOH A 180 580 185 HOH HOH . E 4 HOH A 181 581 171 HOH HOH . E 4 HOH A 182 582 182 HOH HOH . E 4 HOH A 183 583 145 HOH HOH . E 4 HOH A 184 584 168 HOH HOH . E 4 HOH A 185 585 90 HOH HOH . E 4 HOH A 186 586 57 HOH HOH . E 4 HOH A 187 587 38 HOH HOH . E 4 HOH A 188 588 158 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . B 2 87.278 1.485 6.664 1 28.87 ? N1 PLP 301 A 1 HETATM 2 C C2 PLP . . . B 2 86.861 1.113 5.406 1 28.03 ? C2 PLP 301 A 1 HETATM 3 C C2A PLP . . . B 2 86.389 2.15 4.432 1 26.38 ? C2A PLP 301 A 1 HETATM 4 C C3 PLP . . . B 2 86.861 -0.23 5.052 1 31.97 ? C3 PLP 301 A 1 HETATM 5 O O3 PLP . . . B 2 86.435 -0.616 3.802 1 29.15 ? O3 PLP 301 A 1 HETATM 6 C C4 PLP . . . B 2 87.295 -1.195 5.961 1 30.47 ? C4 PLP 301 A 1 HETATM 7 C C4A PLP . . . B 2 86.959 -2.622 5.656 1 32.5 ? C4A PLP 301 A 1 HETATM 8 C C5 PLP . . . B 2 87.723 -0.809 7.243 1 26.73 ? C5 PLP 301 A 1 HETATM 9 C C6 PLP . . . B 2 87.714 0.538 7.57 1 26.68 ? C6 PLP 301 A 1 HETATM 10 C C5A PLP . . . B 2 88.212 -1.795 8.301 1 29.53 ? C5A PLP 301 A 1 HETATM 11 O O4P PLP . . . B 2 89.28 -2.618 7.835 1 50.64 ? O4P PLP 301 A 1 HETATM 12 P P PLP . . . B 2 90.28 -3.49 8.782 1 45 ? P PLP 301 A 1 HETATM 13 O O1P PLP . . . B 2 91.673 -3.482 8.199 1 57.77 ? O1P PLP 301 A 1 HETATM 14 O O2P PLP . . . B 2 90.32 -2.949 10.192 1 38.57 ? O2P PLP 301 A 1 HETATM 15 O O3P PLP . . . B 2 89.738 -4.892 8.851 1 39.37 ? O3P PLP 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 15 #