data_7U9R # _model_server_result.job_id Jp-P3WwoWgIuhG23Ss-g9w _model_server_result.datetime_utc '2024-11-04 22:32:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7u9r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":5002}' # _entry.id 7U9R # _exptl.entry_id 7U9R _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7U9R _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7U9R _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 M N N ? 4 O N N ? 4 R N N ? 4 T N N ? 4 W N N ? 4 Y N N ? 4 BA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 36 A CYS 36 1_555 B SG CYS 65 A CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 B SG CYS 4806 A CYS 4806 1_555 B SG CYS 4812 A CYS 4812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 F SG CYS 36 D CYS 36 1_555 F SG CYS 65 D CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 F SG CYS 4806 D CYS 4806 1_555 F SG CYS 4812 D CYS 4812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 G SG CYS 36 B CYS 36 1_555 G SG CYS 65 B CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf6 G SG CYS 4806 B CYS 4806 1_555 G SG CYS 4812 B CYS 4812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 H SG CYS 36 C CYS 36 1_555 H SG CYS 65 C CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf8 H SG CYS 4806 C CYS 4806 1_555 H SG CYS 4812 C CYS 4812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 B SG CYS 4888 A CYS 4888 1_555 I ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc2 B SG CYS 4891 A CYS 4891 1_555 I ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc3 B NE2 HIS 4908 A HIS 4908 1_555 I ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc4 B ND1 HIS 4913 A HIS 4913 1_555 I ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc5 F SG CYS 4888 D CYS 4888 1_555 N ZN ZN . D ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc6 F SG CYS 4891 D CYS 4891 1_555 N ZN ZN . D ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc7 F NE2 HIS 4908 D HIS 4908 1_555 N ZN ZN . D ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc8 F ND1 HIS 4913 D HIS 4913 1_555 N ZN ZN . D ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc9 G SG CYS 4888 B CYS 4888 1_555 S ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc10 G SG CYS 4891 B CYS 4891 1_555 S ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc11 G NE2 HIS 4908 B HIS 4908 1_555 S ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc12 G ND1 HIS 4913 B HIS 4913 1_555 S ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc13 H SG CYS 4888 C CYS 4888 1_555 X ZN ZN . C ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc14 H SG CYS 4891 C CYS 4891 1_555 X ZN ZN . C ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc15 H NE2 HIS 4908 C HIS 4908 1_555 X ZN ZN . C ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc16 H ND1 HIS 4913 C HIS 4913 1_555 X ZN ZN . C ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7U9R _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 ZN A 1 5001 5001 ZN ZN . J 4 ATP A 1 5002 5002 ATP ATP . K 5 CA A 1 5003 5003 CA CA . L 6 XAN A 1 5004 5004 XAN XAN . M 4 ATP A 1 5005 5005 ATP ATP . N 3 ZN D 1 5001 5001 ZN ZN . O 4 ATP D 1 5002 5002 ATP ATP . P 5 CA D 1 5003 5003 CA CA . Q 6 XAN D 1 5004 5004 XAN XAN . R 4 ATP D 1 5005 5005 ATP ATP . S 3 ZN B 1 5001 5001 ZN ZN . T 4 ATP B 1 5002 5002 ATP ATP . U 5 CA B 1 5003 5003 CA CA . V 6 XAN B 1 5004 5004 XAN XAN . W 4 ATP B 1 5005 5005 ATP ATP . X 3 ZN C 1 5001 5001 ZN ZN . Y 4 ATP C 1 5002 5002 ATP ATP . Z 5 CA C 1 5003 5003 CA CA . AA 6 XAN C 1 5004 5004 XAN XAN . BA 4 ATP C 1 5005 5005 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . O 4 185.213 207.089 258.568 1 113.18 ? PG ATP 5002 D 1 HETATM 2 O O1G ATP . . . O 4 184.279 206.611 257.509 1 113.18 ? O1G ATP 5002 D 1 HETATM 3 O O2G ATP . . . O 4 184.752 208.376 259.261 1 113.18 ? O2G ATP 5002 D 1 HETATM 4 O O3G ATP . . . O 4 185.531 206.032 259.631 1 113.18 ? O3G ATP 5002 D 1 HETATM 5 P PB ATP . . . O 4 188.023 208.103 258.365 1 113.18 ? PB ATP 5002 D 1 HETATM 6 O O1B ATP . . . O 4 188.036 209.567 258.165 1 113.18 ? O1B ATP 5002 D 1 HETATM 7 O O2B ATP . . . O 4 188.319 207.631 259.789 1 113.18 ? O2B ATP 5002 D 1 HETATM 8 O O3B ATP . . . O 4 186.634 207.46 257.938 1 113.18 ? O3B ATP 5002 D 1 HETATM 9 P PA ATP . . . O 4 189.01 206.098 256.417 1 113.18 ? PA ATP 5002 D 1 HETATM 10 O O1A ATP . . . O 4 187.747 205.339 256.528 1 113.18 ? O1A ATP 5002 D 1 HETATM 11 O O2A ATP . . . O 4 190.275 205.285 256.689 1 113.18 ? O2A ATP 5002 D 1 HETATM 12 O O3A ATP . . . O 4 189.042 207.357 257.397 1 113.18 ? O3A ATP 5002 D 1 HETATM 13 O O5' ATP . . . O 4 189.139 206.752 254.986 1 113.18 ? O5' ATP 5002 D 1 HETATM 14 C C5' ATP . . . O 4 188.708 208.107 254.738 1 113.18 ? C5' ATP 5002 D 1 HETATM 15 C C4' ATP . . . O 4 189.896 209.028 254.87 1 113.18 ? C4' ATP 5002 D 1 HETATM 16 O O4' ATP . . . O 4 191.079 208.364 254.371 1 113.18 ? O4' ATP 5002 D 1 HETATM 17 C C3' ATP . . . O 4 189.793 210.341 254.099 1 113.18 ? C3' ATP 5002 D 1 HETATM 18 O O3' ATP . . . O 4 190.442 211.395 254.8 1 113.18 ? O3' ATP 5002 D 1 HETATM 19 C C2' ATP . . . O 4 190.503 210.011 252.785 1 113.18 ? C2' ATP 5002 D 1 HETATM 20 O O2' ATP . . . O 4 191.056 211.172 252.176 1 113.18 ? O2' ATP 5002 D 1 HETATM 21 C C1' ATP . . . O 4 191.614 209.083 253.275 1 113.18 ? C1' ATP 5002 D 1 HETATM 22 N N9 ATP . . . O 4 192.077 208.125 252.276 1 113.18 ? N9 ATP 5002 D 1 HETATM 23 C C8 ATP . . . O 4 193.315 208.081 251.692 1 113.18 ? C8 ATP 5002 D 1 HETATM 24 N N7 ATP . . . O 4 193.463 207.112 250.822 1 113.18 ? N7 ATP 5002 D 1 HETATM 25 C C5 ATP . . . O 4 192.233 206.47 250.835 1 113.18 ? C5 ATP 5002 D 1 HETATM 26 C C6 ATP . . . O 4 191.735 205.357 250.131 1 113.18 ? C6 ATP 5002 D 1 HETATM 27 N N6 ATP . . . O 4 192.447 204.661 249.238 1 113.18 ? N6 ATP 5002 D 1 HETATM 28 N N1 ATP . . . O 4 190.462 204.975 250.377 1 113.18 ? N1 ATP 5002 D 1 HETATM 29 C C2 ATP . . . O 4 189.745 205.666 251.267 1 113.18 ? C2 ATP 5002 D 1 HETATM 30 N N3 ATP . . . O 4 190.107 206.729 251.989 1 113.18 ? N3 ATP 5002 D 1 HETATM 31 C C4 ATP . . . O 4 191.368 207.085 251.726 1 113.18 ? C4 ATP 5002 D 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 205 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #