data_7U9S # _model_server_result.job_id wuVxdF8p5V5FdXYGgIMYUw _model_server_result.datetime_utc '2024-11-28 14:05:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7u9s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":402}' # _entry.id 7U9S # _exptl.entry_id 7U9S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.234 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-{2-[4-(trifluoromethyl)phenyl]ethyl}-1,4-dihydropyrazine-2,3-dione _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7U9S _cell.length_a 123.091 _cell.length_b 73.155 _cell.length_c 80.19 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7U9S _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1,2 B,E,F,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C13 H11 F3 N2 O2' _chem_comp.formula_weight 284.234 _chem_comp.id M7I _chem_comp.mon_nstd_flag . _chem_comp.name 5-{2-[4-(trifluoromethyl)phenyl]ethyl}-1,4-dihydropyrazine-2,3-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F3 C11 M7I sing 309 n n F2 C11 M7I sing 310 n n F1 C11 M7I sing 311 n n C11 C8 M7I sing 312 n n C8 C7 M7I doub 313 n y C8 C9 M7I sing 314 n y C7 C6 M7I sing 315 n y C9 C10 M7I doub 316 n y C6 C5 M7I doub 317 n y C10 C5 M7I sing 318 n y C5 C4 M7I sing 319 n n C4 C3 M7I sing 320 n n C12 N2 M7I sing 321 n n C12 C2 M7I doub 322 n n C3 C2 M7I sing 323 n n N2 C13 M7I sing 324 n n C2 N1 M7I sing 325 n n C13 O2 M7I doub 326 n n C13 C1 M7I sing 327 n n N1 C1 M7I sing 328 n n C1 O1 M7I doub 329 n n C4 H42 M7I sing 330 n n C4 H41 M7I sing 331 n n C6 H6 M7I sing 332 n n C7 H7 M7I sing 333 n n C10 H10 M7I sing 334 n n C3 H32 M7I sing 335 n n C3 H31 M7I sing 336 n n C9 H9 M7I sing 337 n n C12 H12 M7I sing 338 n n N2 HN2 M7I sing 339 n n N1 H2 M7I sing 340 n n # _atom_sites.entry_id 7U9S _atom_sites.fract_transf_matrix[1][1] 0.008124 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01367 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01247 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 401 401 FAD FAD . D 3 M7I A 1 402 402 M7I LIG . E 2 FAD B 1 401 401 FAD FAD . F 3 M7I B 1 402 402 M7I LIG . G 4 HOH A 1 501 501 HOH HOH . G 4 HOH A 2 502 502 HOH HOH . G 4 HOH A 3 503 503 HOH HOH . G 4 HOH A 4 504 504 HOH HOH . G 4 HOH A 5 505 505 HOH HOH . G 4 HOH A 6 506 506 HOH HOH . G 4 HOH A 7 507 507 HOH HOH . G 4 HOH A 8 508 508 HOH HOH . G 4 HOH A 9 509 509 HOH HOH . G 4 HOH A 10 510 510 HOH HOH . G 4 HOH A 11 511 511 HOH HOH . G 4 HOH A 12 512 512 HOH HOH . G 4 HOH A 13 513 513 HOH HOH . G 4 HOH A 14 514 514 HOH HOH . G 4 HOH A 15 515 515 HOH HOH . G 4 HOH A 16 516 516 HOH HOH . G 4 HOH A 17 517 517 HOH HOH . G 4 HOH A 18 518 518 HOH HOH . G 4 HOH A 19 519 519 HOH HOH . G 4 HOH A 20 520 520 HOH HOH . G 4 HOH A 21 521 521 HOH HOH . G 4 HOH A 22 522 522 HOH HOH . G 4 HOH A 23 523 523 HOH HOH . G 4 HOH A 24 524 524 HOH HOH . G 4 HOH A 25 525 525 HOH HOH . G 4 HOH A 26 526 526 HOH HOH . G 4 HOH A 27 527 527 HOH HOH . G 4 HOH A 28 528 528 HOH HOH . G 4 HOH A 29 529 529 HOH HOH . G 4 HOH A 30 530 530 HOH HOH . G 4 HOH A 31 531 531 HOH HOH . G 4 HOH A 32 532 532 HOH HOH . G 4 HOH A 33 533 533 HOH HOH . G 4 HOH A 34 534 534 HOH HOH . G 4 HOH A 35 535 535 HOH HOH . G 4 HOH A 36 536 536 HOH HOH . G 4 HOH A 37 537 537 HOH HOH . G 4 HOH A 38 538 538 HOH HOH . G 4 HOH A 39 539 539 HOH HOH . G 4 HOH A 40 540 540 HOH HOH . G 4 HOH A 41 541 541 HOH HOH . G 4 HOH A 42 542 542 HOH HOH . G 4 HOH A 43 543 543 HOH HOH . G 4 HOH A 44 544 544 HOH HOH . G 4 HOH A 45 545 545 HOH HOH . G 4 HOH A 46 546 546 HOH HOH . G 4 HOH A 47 547 547 HOH HOH . G 4 HOH A 48 548 548 HOH HOH . G 4 HOH A 49 549 549 HOH HOH . G 4 HOH A 50 550 550 HOH HOH . G 4 HOH A 51 551 551 HOH HOH . G 4 HOH A 52 552 552 HOH HOH . G 4 HOH A 53 553 553 HOH HOH . G 4 HOH A 54 554 554 HOH HOH . G 4 HOH A 55 555 555 HOH HOH . G 4 HOH A 56 556 556 HOH HOH . G 4 HOH A 57 557 557 HOH HOH . G 4 HOH A 58 558 558 HOH HOH . G 4 HOH A 59 559 559 HOH HOH . G 4 HOH A 60 560 560 HOH HOH . G 4 HOH A 61 561 561 HOH HOH . G 4 HOH A 62 562 562 HOH HOH . G 4 HOH A 63 563 563 HOH HOH . G 4 HOH A 64 564 564 HOH HOH . G 4 HOH A 65 565 565 HOH HOH . G 4 HOH A 66 566 566 HOH HOH . G 4 HOH A 67 567 567 HOH HOH . G 4 HOH A 68 568 568 HOH HOH . G 4 HOH A 69 569 569 HOH HOH . G 4 HOH A 70 570 570 HOH HOH . G 4 HOH A 71 571 571 HOH HOH . G 4 HOH A 72 572 572 HOH HOH . G 4 HOH A 73 573 573 HOH HOH . G 4 HOH A 74 574 574 HOH HOH . G 4 HOH A 75 575 575 HOH HOH . G 4 HOH A 76 576 576 HOH HOH . G 4 HOH A 77 577 577 HOH HOH . G 4 HOH A 78 578 578 HOH HOH . G 4 HOH A 79 579 579 HOH HOH . G 4 HOH A 80 580 580 HOH HOH . G 4 HOH A 81 581 581 HOH HOH . H 4 HOH B 1 501 501 HOH HOH . H 4 HOH B 2 502 502 HOH HOH . H 4 HOH B 3 503 503 HOH HOH . H 4 HOH B 4 504 504 HOH HOH . H 4 HOH B 5 505 505 HOH HOH . H 4 HOH B 6 506 506 HOH HOH . H 4 HOH B 7 507 507 HOH HOH . H 4 HOH B 8 508 508 HOH HOH . H 4 HOH B 9 509 509 HOH HOH . H 4 HOH B 10 510 510 HOH HOH . H 4 HOH B 11 511 511 HOH HOH . H 4 HOH B 12 512 512 HOH HOH . H 4 HOH B 13 513 513 HOH HOH . H 4 HOH B 14 514 514 HOH HOH . H 4 HOH B 15 515 515 HOH HOH . H 4 HOH B 16 516 516 HOH HOH . H 4 HOH B 17 517 517 HOH HOH . H 4 HOH B 18 518 518 HOH HOH . H 4 HOH B 19 519 519 HOH HOH . H 4 HOH B 20 520 520 HOH HOH . H 4 HOH B 21 521 521 HOH HOH . H 4 HOH B 22 522 522 HOH HOH . H 4 HOH B 23 523 523 HOH HOH . H 4 HOH B 24 524 524 HOH HOH . H 4 HOH B 25 525 525 HOH HOH . H 4 HOH B 26 526 526 HOH HOH . H 4 HOH B 27 527 527 HOH HOH . H 4 HOH B 28 528 528 HOH HOH . H 4 HOH B 29 529 529 HOH HOH . H 4 HOH B 30 530 530 HOH HOH . H 4 HOH B 31 531 531 HOH HOH . H 4 HOH B 32 532 532 HOH HOH . H 4 HOH B 33 533 533 HOH HOH . H 4 HOH B 34 534 534 HOH HOH . H 4 HOH B 35 535 535 HOH HOH . H 4 HOH B 36 536 536 HOH HOH . H 4 HOH B 37 537 537 HOH HOH . H 4 HOH B 38 538 538 HOH HOH . H 4 HOH B 39 539 539 HOH HOH . H 4 HOH B 40 540 540 HOH HOH . H 4 HOH B 41 541 541 HOH HOH . H 4 HOH B 42 542 542 HOH HOH . H 4 HOH B 43 543 543 HOH HOH . H 4 HOH B 44 544 544 HOH HOH . H 4 HOH B 45 545 545 HOH HOH . H 4 HOH B 46 546 546 HOH HOH . H 4 HOH B 47 547 547 HOH HOH . H 4 HOH B 48 548 548 HOH HOH . H 4 HOH B 49 549 549 HOH HOH . H 4 HOH B 50 550 550 HOH HOH . H 4 HOH B 51 551 551 HOH HOH . H 4 HOH B 52 552 552 HOH HOH . H 4 HOH B 53 553 553 HOH HOH . H 4 HOH B 54 554 554 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 M7I . . . F 3 -11.813 13.428 -0.575 1 39.62 -1 N1 M7I 402 B 1 HETATM 2 C C4 M7I . . . F 3 -9.835 11.942 1.403 1 36.59 ? C4 M7I 402 B 1 HETATM 3 C C5 M7I . . . F 3 -10.296 12.525 2.727 1 35.13 ? C5 M7I 402 B 1 HETATM 4 C C6 M7I . . . F 3 -9.828 13.789 3.14 1 36.55 ? C6 M7I 402 B 1 HETATM 5 C C7 M7I . . . F 3 -10.261 14.334 4.364 1 42.26 ? C7 M7I 402 B 1 HETATM 6 C C8 M7I . . . F 3 -11.163 13.613 5.18 1 47.03 ? C8 M7I 402 B 1 HETATM 7 C C10 M7I . . . F 3 -11.191 11.802 3.544 1 42.05 ? C10 M7I 402 B 1 HETATM 8 C C13 M7I . . . F 3 -14.27 14.067 -0.282 1 44.3 ? C13 M7I 402 B 1 HETATM 9 O O1 M7I . . . F 3 -12.698 15.314 -1.555 1 38.18 ? O1 M7I 402 B 1 HETATM 10 C C1 M7I . . . F 3 -12.819 14.307 -0.86 1 26 ? C1 M7I 402 B 1 HETATM 11 C C2 M7I . . . F 3 -12.086 12.365 0.221 1 32.03 ? C2 M7I 402 B 1 HETATM 12 C C3 M7I . . . F 3 -10.956 11.393 0.504 1 46.58 ? C3 M7I 402 B 1 HETATM 13 C C9 M7I . . . F 3 -11.624 12.346 4.768 1 44.3 ? C9 M7I 402 B 1 HETATM 14 C C11 M7I . . . F 3 -11.636 14.197 6.503 1 45.28 ? C11 M7I 402 B 1 HETATM 15 F F1 M7I . . . F 3 -11.248 15.463 6.665 1 54.74 ? F1 M7I 402 B 1 HETATM 16 F F2 M7I . . . F 3 -12.965 14.15 6.587 1 50.31 ? F2 M7I 402 B 1 HETATM 17 F F3 M7I . . . F 3 -11.123 13.464 7.492 1 52.31 ? F3 M7I 402 B 1 HETATM 18 C C12 M7I . . . F 3 -13.332 12.135 0.752 1 31.92 ? C12 M7I 402 B 1 HETATM 19 N N2 M7I . . . F 3 -14.402 12.982 0.5 1 34.21 ? N2 M7I 402 B 1 HETATM 20 O O2 M7I . . . F 3 -15.19 14.839 -0.553 1 32.39 ? O2 M7I 402 B 1 HETATM 21 H H42 M7I . . . F 3 -9.139 11.134 1.617 1 38.59 ? H42 M7I 402 B 1 HETATM 22 H H41 M7I . . . F 3 -9.28 12.701 0.852 1 38.59 ? H41 M7I 402 B 1 HETATM 23 H H6 M7I . . . F 3 -9.143 14.341 2.516 1 38.55 ? H6 M7I 402 B 1 HETATM 24 H H7 M7I . . . F 3 -9.906 15.304 4.677 1 44.26 ? H7 M7I 402 B 1 HETATM 25 H H10 M7I . . . F 3 -11.551 10.834 3.228 1 44.05 ? H10 M7I 402 B 1 HETATM 26 H H32 M7I . . . F 3 -11.365 10.487 0.952 1 48.58 ? H32 M7I 402 B 1 HETATM 27 H H31 M7I . . . F 3 -10.539 11.064 -0.444 1 48.58 ? H31 M7I 402 B 1 HETATM 28 H H9 M7I . . . F 3 -12.314 11.795 5.39 1 46.3 ? H9 M7I 402 B 1 HETATM 29 H H12 M7I . . . F 3 -13.573 11.298 1.384 1 33.92 ? H12 M7I 402 B 1 HETATM 30 H HN2 M7I . . . F 3 -15.302 12.758 0.926 1 36.21 ? HN2 M7I 402 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #