data_7U9T
#
_model_server_result.job_id            eRh6ZwGlyNHl5QRE1ks1cw 
_model_server_result.datetime_utc      '2024-11-16 16:29:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7u9t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":5003}' 
#
_entry.id    7U9T 
#
_exptl.entry_id    7U9T 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7U9T 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7U9T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 N N N 
? 5 O N N 
? 5 Q N N 
? 5 R N N 
? 5 T N N 
? 5 U N N 
? 5 W N N 
? 5 X N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 4806 A CYS 4806 1_555 B SG CYS 4812 A CYS 4812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 G SG CYS 4806 D CYS 4806 1_555 G SG CYS 4812 D CYS 4812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 H SG CYS 4806 B CYS 4806 1_555 H SG CYS 4812 B CYS 4812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 I SG CYS 4806 C CYS 4806 1_555 I SG CYS 4812 C CYS 4812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc1 B SG CYS 4888 A CYS 4888 1_555 M ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc2 B SG CYS 4891 A CYS 4891 1_555 M ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc3 B NE2 HIS 4908 A HIS 4908 1_555 M ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc4 B ND1 HIS 4913 A HIS 4913 1_555 M ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
metalc ? metalc5 G SG CYS 4888 D CYS 4888 1_555 P ZN ZN . D ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc6 G SG CYS 4891 D CYS 4891 1_555 P ZN ZN . D ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc7 G NE2 HIS 4908 D HIS 4908 1_555 P ZN ZN . D ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc8 G ND1 HIS 4913 D HIS 4913 1_555 P ZN ZN . D ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc9 H SG CYS 4888 B CYS 4888 1_555 S ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc10 H SG CYS 4891 B CYS 4891 1_555 S ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc11 H NE2 HIS 4908 B HIS 4908 1_555 S ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
metalc ? metalc12 H ND1 HIS 4913 B HIS 4913 1_555 S ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc13 I SG CYS 4888 C CYS 4888 1_555 V ZN ZN . C ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc14 I SG CYS 4891 C CYS 4891 1_555 V ZN ZN . C ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc15 I NE2 HIS 4908 C HIS 4908 1_555 V ZN ZN . C ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
metalc ? metalc16 I ND1 HIS 4913 C HIS 4913 1_555 V ZN ZN . C ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     7U9T 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 4 ZN A 1 5001 5001 ZN ZN . 
N 5 ATP A 1 5002 5002 ATP ATP . 
O 5 ATP A 1 5003 5005 ATP ATP . 
P 4 ZN D 1 5001 5001 ZN ZN . 
Q 5 ATP D 1 5002 5002 ATP ATP . 
R 5 ATP D 1 5003 5005 ATP ATP . 
S 4 ZN B 1 5001 5001 ZN ZN . 
T 5 ATP B 1 5002 5002 ATP ATP . 
U 5 ATP B 1 5003 5005 ATP ATP . 
V 4 ZN C 1 5001 5001 ZN ZN . 
W 5 ATP C 1 5002 5002 ATP ATP . 
X 5 ATP C 1 5003 5005 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . X 5 371.882 162.552 183.98 1 293.99 ? PG ATP 5003 C 1 
HETATM 2 O O1G ATP . . . X 5 372.303 161.246 183.396 1 293.99 ? O1G ATP 5003 C 1 
HETATM 3 O O2G ATP . . . X 5 372.572 162.88 185.309 1 293.99 ? O2G ATP 5003 C 1 
HETATM 4 O O3G ATP . . . X 5 372.048 163.736 183.021 1 293.99 ? O3G ATP 5003 C 1 
HETATM 5 P PB ATP . . . X 5 369.097 163.54 184.533 1 293.99 ? PB ATP 5003 C 1 
HETATM 6 O O1B ATP . . . X 5 367.831 162.979 184.021 1 293.99 ? O1B ATP 5003 C 1 
HETATM 7 O O2B ATP . . . X 5 369.091 163.959 186.004 1 293.99 ? O2B ATP 5003 C 1 
HETATM 8 O O3B ATP . . . X 5 370.318 162.533 184.333 1 293.99 ? O3B ATP 5003 C 1 
HETATM 9 P PA ATP . . . X 5 369.107 165.54 182.35 1 293.99 ? PA ATP 5003 C 1 
HETATM 10 O O1A ATP . . . X 5 368.039 164.791 181.657 1 293.99 ? O1A ATP 5003 C 1 
HETATM 11 O O2A ATP . . . X 5 370.366 165.796 181.521 1 293.99 ? O2A ATP 5003 C 1 
HETATM 12 O O3A ATP . . . X 5 369.565 164.804 183.686 1 293.99 ? O3A ATP 5003 C 1 
HETATM 13 O O5' ATP . . . X 5 368.567 166.926 182.879 1 293.99 ? O5' ATP 5003 C 1 
HETATM 14 C C5' ATP . . . X 5 369.331 168.14 182.717 1 293.99 ? C5' ATP 5003 C 1 
HETATM 15 C C4' ATP . . . X 5 368.41 169.319 182.906 1 293.99 ? C4' ATP 5003 C 1 
HETATM 16 O O4' ATP . . . X 5 369.111 170.374 183.602 1 293.99 ? O4' ATP 5003 C 1 
HETATM 17 C C3' ATP . . . X 5 367.882 169.945 181.618 1 293.99 ? C3' ATP 5003 C 1 
HETATM 18 O O3' ATP . . . X 5 366.563 170.449 181.796 1 293.99 ? O3' ATP 5003 C 1 
HETATM 19 C C2' ATP . . . X 5 368.89 171.066 181.356 1 293.99 ? C2' ATP 5003 C 1 
HETATM 20 O O2' ATP . . . X 5 368.319 172.126 180.598 1 293.99 ? O2' ATP 5003 C 1 
HETATM 21 C C1' ATP . . . X 5 369.198 171.526 182.782 1 293.99 ? C1' ATP 5003 C 1 
HETATM 22 N N9 ATP . . . X 5 370.523 172.115 182.951 1 293.99 ? N9 ATP 5003 C 1 
HETATM 23 C C8 ATP . . . X 5 370.811 173.379 183.396 1 293.99 ? C8 ATP 5003 C 1 
HETATM 24 N N7 ATP . . . X 5 372.093 173.647 183.453 1 293.99 ? N7 ATP 5003 C 1 
HETATM 25 C C5 ATP . . . X 5 372.693 172.476 183.014 1 293.99 ? C5 ATP 5003 C 1 
HETATM 26 C C6 ATP . . . X 5 374.041 172.107 182.84 1 293.99 ? C6 ATP 5003 C 1 
HETATM 27 N N6 ATP . . . X 5 375.074 172.915 183.098 1 293.99 ? N6 ATP 5003 C 1 
HETATM 28 N N1 ATP . . . X 5 374.297 170.86 182.384 1 293.99 ? N1 ATP 5003 C 1 
HETATM 29 C C2 ATP . . . X 5 373.27 170.047 182.124 1 293.99 ? C2 ATP 5003 C 1 
HETATM 30 N N3 ATP . . . X 5 371.962 170.284 182.25 1 293.99 ? N3 ATP 5003 C 1 
HETATM 31 C C4 ATP . . . X 5 371.737 171.523 182.701 1 293.99 ? C4 ATP 5003 C 1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    502 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           31 
#