data_7U9X
#
_model_server_result.job_id            afPSEXAU7Q78kmd4OzE21w 
_model_server_result.datetime_utc      '2024-11-16 16:53:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7u9x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":5002}' 
#
_entry.id    7U9X 
#
_exptl.entry_id    7U9X 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7U9X 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7U9X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 J N N 
? 4 K N N 
? 4 M N N 
? 4 N N N 
? 4 P N N 
? 4 Q N N 
? 4 S N N 
? 4 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4806 A CYS 4806 1_555 A SG CYS 4812 A CYS 4812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 F SG CYS 4806 B CYS 4806 1_555 F SG CYS 4812 B CYS 4812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 G SG CYS 4806 C CYS 4806 1_555 G SG CYS 4812 C CYS 4812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 H SG CYS 4806 D CYS 4806 1_555 H SG CYS 4812 D CYS 4812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc1 A SG CYS 4888 A CYS 4888 1_555 I ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc2 A SG CYS 4891 A CYS 4891 1_555 I ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc3 A NE2 HIS 4908 A HIS 4908 1_555 I ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
metalc ? metalc4 A ND1 HIS 4913 A HIS 4913 1_555 I ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc5 F SG CYS 4888 B CYS 4888 1_555 L ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc6 F SG CYS 4891 B CYS 4891 1_555 L ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc7 F NE2 HIS 4908 B HIS 4908 1_555 L ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
metalc ? metalc8 F ND1 HIS 4913 B HIS 4913 1_555 L ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc9 G SG CYS 4888 C CYS 4888 1_555 O ZN ZN . C ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc10 G SG CYS 4891 C CYS 4891 1_555 O ZN ZN . C ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc11 G NE2 HIS 4908 C HIS 4908 1_555 O ZN ZN . C ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
metalc ? metalc12 G ND1 HIS 4913 C HIS 4913 1_555 O ZN ZN . C ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
metalc ? metalc13 H SG CYS 4888 D CYS 4888 1_555 R ZN ZN . D ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc14 H SG CYS 4891 D CYS 4891 1_555 R ZN ZN . D ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc15 H NE2 HIS 4908 D HIS 4908 1_555 R ZN ZN . D ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
metalc ? metalc16 H ND1 HIS 4913 D HIS 4913 1_555 R ZN ZN . D ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     7U9X 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 ZN A 1 5001 5001 ZN ZN . 
J 4 ATP A 1 5002 5002 ATP ATP . 
K 4 ATP A 1 5003 5005 ATP ATP . 
L 3 ZN B 1 5001 5001 ZN ZN . 
M 4 ATP B 1 5002 5002 ATP ATP . 
N 4 ATP B 1 5003 5005 ATP ATP . 
O 3 ZN C 1 5001 5001 ZN ZN . 
P 4 ATP C 1 5002 5002 ATP ATP . 
Q 4 ATP C 1 5003 5005 ATP ATP . 
R 3 ZN D 1 5001 5001 ZN ZN . 
S 4 ATP D 1 5002 5002 ATP ATP . 
T 4 ATP D 1 5003 5005 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . M 4 233.11 227.929 257.059 1 75.11 ? PG ATP 5002 B 1 
HETATM 2 O O1G ATP . . . M 4 232.27 229.142 256.847 1 75.11 ? O1G ATP 5002 B 1 
HETATM 3 O O2G ATP . . . M 4 234.525 228.24 257.558 1 75.11 ? O2G ATP 5002 B 1 
HETATM 4 O O3G ATP . . . M 4 232.469 226.892 257.989 1 75.11 ? O3G ATP 5002 B 1 
HETATM 5 P PB ATP . . . M 4 232.495 226.629 254.425 1 75.11 ? PB ATP 5002 B 1 
HETATM 6 O O1B ATP . . . M 4 233.178 226.911 253.145 1 75.11 ? O1B ATP 5002 B 1 
HETATM 7 O O2B ATP . . . M 4 232.154 225.162 254.684 1 75.11 ? O2B ATP 5002 B 1 
HETATM 8 O O3B ATP . . . M 4 233.331 227.148 255.679 1 75.11 ? O3B ATP 5002 B 1 
HETATM 9 P PA ATP . . . M 4 229.658 227.181 255.066 1 75.11 ? PA ATP 5002 B 1 
HETATM 10 O O1A ATP . . . M 4 228.793 228.364 254.883 1 75.11 ? O1A ATP 5002 B 1 
HETATM 11 O O2A ATP . . . M 4 229.753 226.669 256.504 1 75.11 ? O2A ATP 5002 B 1 
HETATM 12 O O3A ATP . . . M 4 231.145 227.46 254.572 1 75.11 ? O3A ATP 5002 B 1 
HETATM 13 O O5' ATP . . . M 4 229.194 225.986 254.144 1 75.11 ? O5' ATP 5002 B 1 
HETATM 14 C C5' ATP . . . M 4 229.161 226.116 252.707 1 75.11 ? C5' ATP 5002 B 1 
HETATM 15 C C4' ATP . . . M 4 228.262 225.04 252.149 1 75.11 ? C4' ATP 5002 B 1 
HETATM 16 O O4' ATP . . . M 4 227.103 225.647 251.533 1 75.11 ? O4' ATP 5002 B 1 
HETATM 17 C C3' ATP . . . M 4 228.896 224.134 251.092 1 75.11 ? C3' ATP 5002 B 1 
HETATM 18 O O3' ATP . . . M 4 228.546 222.772 251.308 1 75.11 ? O3' ATP 5002 B 1 
HETATM 19 C C2' ATP . . . M 4 228.313 224.666 249.78 1 75.11 ? C2' ATP 5002 B 1 
HETATM 20 O O2' ATP . . . M 4 228.2 223.645 248.796 1 75.11 ? O2' ATP 5002 B 1 
HETATM 21 C C1' ATP . . . M 4 226.928 225.121 250.235 1 75.11 ? C1' ATP 5002 B 1 
HETATM 22 N N9 ATP . . . M 4 226.324 226.149 249.393 1 75.11 ? N9 ATP 5002 B 1 
HETATM 23 C C8 ATP . . . M 4 225.115 226.077 248.751 1 75.11 ? C8 ATP 5002 B 1 
HETATM 24 N N7 ATP . . . M 4 224.813 227.146 248.056 1 75.11 ? N7 ATP 5002 B 1 
HETATM 25 C C5 ATP . . . M 4 225.9 227.984 248.253 1 75.11 ? C5 ATP 5002 B 1 
HETATM 26 C C6 ATP . . . M 4 226.2 229.278 247.785 1 75.11 ? C6 ATP 5002 B 1 
HETATM 27 N N6 ATP . . . M 4 225.394 229.985 246.987 1 75.11 ? N6 ATP 5002 B 1 
HETATM 28 N N1 ATP . . . M 4 227.372 229.83 248.171 1 75.11 ? N1 ATP 5002 B 1 
HETATM 29 C C2 ATP . . . M 4 228.181 229.128 248.968 1 75.11 ? C2 ATP 5002 B 1 
HETATM 30 N N3 ATP . . . M 4 228.005 227.905 249.472 1 75.11 ? N3 ATP 5002 B 1 
HETATM 31 C C4 ATP . . . M 4 226.84 227.382 249.075 1 75.11 ? C4 ATP 5002 B 1 
#
_model_server_stats.io_time_ms              109 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    548 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           31 
#