data_7U9Z
#
_model_server_result.job_id            8rxqAP0WTrG7sJqZVYghrg 
_model_server_result.datetime_utc      '2024-11-16 16:46:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7u9z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":5005}' 
#
_entry.id    7U9Z 
#
_exptl.entry_id    7U9Z 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7U9Z 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7U9Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 J N N 
? 4 M N N 
? 4 O N N 
? 4 R N N 
? 4 T N N 
? 4 W N N 
? 4 Y N N 
? 4 BA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4806 A CYS 4806 1_555 A SG CYS 4812 A CYS 4812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 F SG CYS 4806 B CYS 4806 1_555 F SG CYS 4812 B CYS 4812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 G SG CYS 4806 C CYS 4806 1_555 G SG CYS 4812 C CYS 4812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 H SG CYS 4806 D CYS 4806 1_555 H SG CYS 4812 D CYS 4812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc1 A OE1 GLU 3848 A GLU 3848 1_555 K CA CA . A CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? 
metalc ? metalc2 A OE1 GLU 3922 A GLU 3922 1_555 K CA CA . A CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc3 A SG CYS 4888 A CYS 4888 1_555 I ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc4 A SG CYS 4891 A CYS 4891 1_555 I ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
metalc ? metalc5 A NE2 HIS 4908 A HIS 4908 1_555 I ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc6 A ND1 HIS 4913 A HIS 4913 1_555 I ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc7 A O THR 4931 A THR 4931 1_555 K CA CA . A CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? 
metalc ? metalc8 F OE1 GLU 3848 B GLU 3848 1_555 P CA CA . B CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? 
metalc ? metalc9 F OE1 GLU 3922 B GLU 3922 1_555 P CA CA . B CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc10 F SG CYS 4888 B CYS 4888 1_555 N ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc11 F SG CYS 4891 B CYS 4891 1_555 N ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
metalc ? metalc12 F NE2 HIS 4908 B HIS 4908 1_555 N ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc13 F ND1 HIS 4913 B HIS 4913 1_555 N ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc14 F O THR 4931 B THR 4931 1_555 P CA CA . B CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? 
metalc ? metalc15 G OE1 GLU 3848 C GLU 3848 1_555 U CA CA . C CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? 
metalc ? metalc16 G OE1 GLU 3922 C GLU 3922 1_555 U CA CA . C CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc17 G SG CYS 4888 C CYS 4888 1_555 S ZN ZN . C ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc18 G SG CYS 4891 C CYS 4891 1_555 S ZN ZN . C ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
metalc ? metalc19 G NE2 HIS 4908 C HIS 4908 1_555 S ZN ZN . C ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc20 G ND1 HIS 4913 C HIS 4913 1_555 S ZN ZN . C ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc21 G O THR 4931 C THR 4931 1_555 U CA CA . C CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? 
metalc ? metalc22 H OE1 GLU 3848 D GLU 3848 1_555 Z CA CA . D CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? 
metalc ? metalc23 H OE1 GLU 3922 D GLU 3922 1_555 Z CA CA . D CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? 
metalc ? metalc24 H SG CYS 4888 D CYS 4888 1_555 X ZN ZN . D ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc25 H SG CYS 4891 D CYS 4891 1_555 X ZN ZN . D ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc26 H NE2 HIS 4908 D HIS 4908 1_555 X ZN ZN . D ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc27 H ND1 HIS 4913 D HIS 4913 1_555 X ZN ZN . D ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc28 H O THR 4931 D THR 4931 1_555 Z CA CA . D CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     7U9Z 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 ZN A 1 5001 5001 ZN ZN . 
J 4 ATP A 1 5002 5002 ATP ATP . 
K 5 CA A 1 5003 5003 CA CA . 
L 6 XAN A 1 5004 5004 XAN XAN . 
M 4 ATP A 1 5005 5005 ATP ATP . 
N 3 ZN B 1 5001 5001 ZN ZN . 
O 4 ATP B 1 5002 5002 ATP ATP . 
P 5 CA B 1 5003 5003 CA CA . 
Q 6 XAN B 1 5004 5004 XAN XAN . 
R 4 ATP B 1 5005 5005 ATP ATP . 
S 3 ZN C 1 5001 5001 ZN ZN . 
T 4 ATP C 1 5002 5002 ATP ATP . 
U 5 CA C 1 5003 5003 CA CA . 
V 6 XAN C 1 5004 5004 XAN XAN . 
W 4 ATP C 1 5005 5005 ATP ATP . 
X 3 ZN D 1 5001 5001 ZN ZN . 
Y 4 ATP D 1 5002 5002 ATP ATP . 
Z 5 CA D 1 5003 5003 CA CA . 
AA 6 XAN D 1 5004 5004 XAN XAN . 
BA 4 ATP D 1 5005 5005 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . M 4 59.046 173.726 185.291 1 217.18 ? PG ATP 5005 A 1 
HETATM 2 O O1G ATP . . . M 4 58.157 173.048 186.277 1 217.18 ? O1G ATP 5005 A 1 
HETATM 3 O O2G ATP . . . M 4 59.75 172.76 184.331 1 217.18 ? O2G ATP 5005 A 1 
HETATM 4 O O3G ATP . . . M 4 60.093 174.642 185.934 1 217.18 ? O3G ATP 5005 A 1 
HETATM 5 P PB ATP . . . M 4 57.293 176.001 184.424 1 217.18 ? PB ATP 5005 A 1 
HETATM 6 O O1B ATP . . . M 4 55.96 175.716 184.993 1 217.18 ? O1B ATP 5005 A 1 
HETATM 7 O O2B ATP . . . M 4 58.107 177.066 185.158 1 217.18 ? O2B ATP 5005 A 1 
HETATM 8 O O3B ATP . . . M 4 58.197 174.693 184.338 1 217.18 ? O3B ATP 5005 A 1 
HETATM 9 P PA ATP . . . M 4 56.065 176.739 181.832 1 217.18 ? PA ATP 5005 A 1 
HETATM 10 O O1A ATP . . . M 4 56.546 176.543 180.449 1 217.18 ? O1A ATP 5005 A 1 
HETATM 11 O O2A ATP . . . M 4 55.518 178.133 182.137 1 217.18 ? O2A ATP 5005 A 1 
HETATM 12 O O3A ATP . . . M 4 57.212 176.444 182.897 1 217.18 ? O3A ATP 5005 A 1 
HETATM 13 O O5' ATP . . . M 4 54.955 175.678 182.2 1 217.18 ? O5' ATP 5005 A 1 
HETATM 14 C C5' ATP . . . M 4 54.863 174.417 181.503 1 217.18 ? C5' ATP 5005 A 1 
HETATM 15 C C4' ATP . . . M 4 55.834 173.445 182.125 1 217.18 ? C4' ATP 5005 A 1 
HETATM 16 O O4' ATP . . . M 4 55.127 172.262 182.553 1 217.18 ? O4' ATP 5005 A 1 
HETATM 17 C C3' ATP . . . M 4 56.924 172.928 181.196 1 217.18 ? C3' ATP 5005 A 1 
HETATM 18 O O3' ATP . . . M 4 58.024 173.829 181.148 1 217.18 ? O3' ATP 5005 A 1 
HETATM 19 C C2' ATP . . . M 4 57.304 171.599 181.853 1 217.18 ? C2' ATP 5005 A 1 
HETATM 20 O O2' ATP . . . M 4 58.245 171.775 182.906 1 217.18 ? O2' ATP 5005 A 1 
HETATM 21 C C1' ATP . . . M 4 55.957 171.12 182.407 1 217.18 ? C1' ATP 5005 A 1 
HETATM 22 N N9 ATP . . . M 4 55.273 170.157 181.551 1 217.18 ? N9 ATP 5005 A 1 
HETATM 23 C C8 ATP . . . M 4 55.796 169.509 180.462 1 217.18 ? C8 ATP 5005 A 1 
HETATM 24 N N7 ATP . . . M 4 54.959 168.689 179.875 1 217.18 ? N7 ATP 5005 A 1 
HETATM 25 C C5 ATP . . . M 4 53.801 168.806 180.629 1 217.18 ? C5 ATP 5005 A 1 
HETATM 26 C C6 ATP . . . M 4 52.535 168.197 180.528 1 217.18 ? C6 ATP 5005 A 1 
HETATM 27 N N6 ATP . . . M 4 52.21 167.309 179.582 1 217.18 ? N6 ATP 5005 A 1 
HETATM 28 N N1 ATP . . . M 4 51.601 168.534 181.444 1 217.18 ? N1 ATP 5005 A 1 
HETATM 29 C C2 ATP . . . M 4 51.919 169.419 182.392 1 217.18 ? C2 ATP 5005 A 1 
HETATM 30 N N3 ATP . . . M 4 53.076 170.057 182.586 1 217.18 ? N3 ATP 5005 A 1 
HETATM 31 C C4 ATP . . . M 4 53.981 169.706 181.667 1 217.18 ? C4 ATP 5005 A 1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    591 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          25 
_model_server_stats.element_count           31 
#