data_7UA1 # _model_server_result.job_id H9lbtDbFXqRO8z03-K7w8g _model_server_result.datetime_utc '2024-11-16 16:35:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ua1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":5003}' # _entry.id 7UA1 # _exptl.entry_id 7UA1 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7UA1 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UA1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 K N N ? 4 N N N ? 4 O N N ? 4 R N N ? 4 S N N ? 4 V N N ? 4 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4806 A CYS 4806 1_555 A SG CYS 4812 A CYS 4812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 F SG CYS 4806 B CYS 4806 1_555 F SG CYS 4812 B CYS 4812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 G SG CYS 4806 C CYS 4806 1_555 G SG CYS 4812 C CYS 4812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 H SG CYS 4806 D CYS 4806 1_555 H SG CYS 4812 D CYS 4812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A NZ LYS 897 A LYS 897 1_555 L C11 KVR . A KVR 5004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.502 ? covale ? covale2 F NZ LYS 897 B LYS 897 1_555 P C13 KVR . B KVR 5004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale3 G NZ LYS 897 C LYS 897 1_555 T C13 KVR . C KVR 5004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale4 H NZ LYS 897 D LYS 897 1_555 X C13 KVR . D KVR 5004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? metalc ? metalc1 A SG CYS 4888 A CYS 4888 1_555 I ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc2 A SG CYS 4891 A CYS 4891 1_555 I ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc3 A NE2 HIS 4908 A HIS 4908 1_555 I ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc4 A ND1 HIS 4913 A HIS 4913 1_555 I ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc5 F SG CYS 4888 B CYS 4888 1_555 M ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc6 F SG CYS 4891 B CYS 4891 1_555 M ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc7 F NE2 HIS 4908 B HIS 4908 1_555 M ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc8 F ND1 HIS 4913 B HIS 4913 1_555 M ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc9 G SG CYS 4888 C CYS 4888 1_555 Q ZN ZN . C ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc10 G SG CYS 4891 C CYS 4891 1_555 Q ZN ZN . C ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc11 G NE2 HIS 4908 C HIS 4908 1_555 Q ZN ZN . C ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc12 G ND1 HIS 4913 C HIS 4913 1_555 Q ZN ZN . C ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc13 H SG CYS 4888 D CYS 4888 1_555 U ZN ZN . D ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc14 H SG CYS 4891 D CYS 4891 1_555 U ZN ZN . D ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc15 H NE2 HIS 4908 D HIS 4908 1_555 U ZN ZN . D ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc16 H ND1 HIS 4913 D HIS 4913 1_555 U ZN ZN . D ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7UA1 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 ZN A 1 5001 5001 ZN ZN . J 4 ATP A 1 5002 5002 ATP ATP . K 4 ATP A 1 5003 5005 ATP ATP . L 5 KVR A 1 5004 5006 KVR LIG . M 3 ZN B 1 5001 5001 ZN ZN . N 4 ATP B 1 5002 5002 ATP ATP . O 4 ATP B 1 5003 5005 ATP ATP . P 5 KVR B 1 5004 5006 KVR LIG . Q 3 ZN C 1 5001 5001 ZN ZN . R 4 ATP C 1 5002 5002 ATP ATP . S 4 ATP C 1 5003 5005 ATP ATP . T 5 KVR C 1 5004 5006 KVR LIG . U 3 ZN D 1 5001 5001 ZN ZN . V 4 ATP D 1 5002 5002 ATP ATP . W 4 ATP D 1 5003 5005 ATP ATP . X 5 KVR D 1 5004 5006 KVR LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . O 4 182.044 369.91 188.176 1 179.94 ? PG ATP 5003 B 1 HETATM 2 O O1G ATP . . . O 4 181.923 368.971 189.328 1 179.94 ? O1G ATP 5003 B 1 HETATM 3 O O2G ATP . . . O 4 181.797 371.376 188.55 1 179.94 ? O2G ATP 5003 B 1 HETATM 4 O O3G ATP . . . O 4 183.38 369.801 187.431 1 179.94 ? O3G ATP 5003 B 1 HETATM 5 P PB ATP . . . O 4 180.261 368.335 186.35 1 179.94 ? PB ATP 5003 B 1 HETATM 6 O O1B ATP . . . O 4 181.224 367.592 185.512 1 179.94 ? O1B ATP 5003 B 1 HETATM 7 O O2B ATP . . . O 4 179.559 367.517 187.434 1 179.94 ? O2B ATP 5003 B 1 HETATM 8 O O3B ATP . . . O 4 180.937 369.586 187.067 1 179.94 ? O3B ATP 5003 B 1 HETATM 9 P PA ATP . . . O 4 178.916 370.431 184.749 1 179.94 ? PA ATP 5003 B 1 HETATM 10 O O1A ATP . . . O 4 180.197 371.141 184.555 1 179.94 ? O1A ATP 5003 B 1 HETATM 11 O O2A ATP . . . O 4 177.86 371.196 185.547 1 179.94 ? O2A ATP 5003 B 1 HETATM 12 O O3A ATP . . . O 4 179.129 369.029 185.473 1 179.94 ? O3A ATP 5003 B 1 HETATM 13 O O5' ATP . . . O 4 178.29 370.015 183.361 1 179.94 ? O5' ATP 5003 B 1 HETATM 14 C C5' ATP . . . O 4 177.767 368.687 183.142 1 179.94 ? C5' ATP 5003 B 1 HETATM 15 C C4' ATP . . . O 4 176.369 368.616 183.702 1 179.94 ? C4' ATP 5003 B 1 HETATM 16 O O4' ATP . . . O 4 175.728 369.902 183.562 1 179.94 ? O4' ATP 5003 B 1 HETATM 17 C C3' ATP . . . O 4 175.442 367.624 183.008 1 179.94 ? C3' ATP 5003 B 1 HETATM 18 O O3' ATP . . . O 4 175.546 366.335 183.6 1 179.94 ? O3' ATP 5003 B 1 HETATM 19 C C2' ATP . . . O 4 174.063 368.241 183.247 1 179.94 ? C2' ATP 5003 B 1 HETATM 20 O O2' ATP . . . O 4 173.547 367.898 184.528 1 179.94 ? O2' ATP 5003 B 1 HETATM 21 C C1' ATP . . . O 4 174.374 369.739 183.174 1 179.94 ? C1' ATP 5003 B 1 HETATM 22 N N9 ATP . . . O 4 174.201 370.32 181.847 1 179.94 ? N9 ATP 5003 B 1 HETATM 23 C C8 ATP . . . O 4 173.518 369.78 180.788 1 179.94 ? C8 ATP 5003 B 1 HETATM 24 N N7 ATP . . . O 4 173.523 370.527 179.711 1 179.94 ? N7 ATP 5003 B 1 HETATM 25 C C5 ATP . . . O 4 174.262 371.639 180.086 1 179.94 ? C5 ATP 5003 B 1 HETATM 26 C C6 ATP . . . O 4 174.638 372.807 179.396 1 179.94 ? C6 ATP 5003 B 1 HETATM 27 N N6 ATP . . . O 4 174.306 373.061 178.126 1 179.94 ? N6 ATP 5003 B 1 HETATM 28 N N1 ATP . . . O 4 175.377 373.722 180.064 1 179.94 ? N1 ATP 5003 B 1 HETATM 29 C C2 ATP . . . O 4 175.711 373.475 181.333 1 179.94 ? C2 ATP 5003 B 1 HETATM 30 N N3 ATP . . . O 4 175.415 372.413 182.085 1 179.94 ? N3 ATP 5003 B 1 HETATM 31 C C4 ATP . . . O 4 174.685 371.526 181.401 1 179.94 ? C4 ATP 5003 B 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 405 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #