data_7UA3 # _model_server_result.job_id rsy7Nzj4EmXJTwtf6AKrvQ _model_server_result.datetime_utc '2024-11-16 17:53:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ua3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":5003}' # _entry.id 7UA3 # _exptl.entry_id 7UA3 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7UA3 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UA3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 N N N ? 5 O N N ? 5 Q N N ? 5 R N N ? 5 T N N ? 5 U N N ? 5 W N N ? 5 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4806 A CYS 4806 1_555 A SG CYS 4812 A CYS 4812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 J SG CYS 4806 B CYS 4806 1_555 J SG CYS 4812 B CYS 4812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 K SG CYS 4806 C CYS 4806 1_555 K SG CYS 4812 C CYS 4812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 L SG CYS 4806 D CYS 4806 1_555 L SG CYS 4812 D CYS 4812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc1 A SG CYS 4888 A CYS 4888 1_555 M ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc2 A SG CYS 4891 A CYS 4891 1_555 M ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc3 A NE2 HIS 4908 A HIS 4908 1_555 M ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc4 A ND1 HIS 4913 A HIS 4913 1_555 M ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc5 J SG CYS 4888 B CYS 4888 1_555 P ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc6 J SG CYS 4891 B CYS 4891 1_555 P ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc7 J NE2 HIS 4908 B HIS 4908 1_555 P ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc8 J ND1 HIS 4913 B HIS 4913 1_555 P ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc9 K SG CYS 4888 C CYS 4888 1_555 S ZN ZN . C ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc10 K SG CYS 4891 C CYS 4891 1_555 S ZN ZN . C ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc11 K NE2 HIS 4908 C HIS 4908 1_555 S ZN ZN . C ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc12 K ND1 HIS 4913 C HIS 4913 1_555 S ZN ZN . C ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc13 L SG CYS 4888 D CYS 4888 1_555 V ZN ZN . D ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc14 L SG CYS 4891 D CYS 4891 1_555 V ZN ZN . D ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc15 L NE2 HIS 4908 D HIS 4908 1_555 V ZN ZN . D ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc16 L ND1 HIS 4913 D HIS 4913 1_555 V ZN ZN . D ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 7UA3 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 4 ZN A 1 5001 5001 ZN ZN . N 5 ATP A 1 5002 5002 ATP ATP . O 5 ATP A 1 5003 5005 ATP ATP . P 4 ZN B 1 5001 5001 ZN ZN . Q 5 ATP B 1 5002 5002 ATP ATP . R 5 ATP B 1 5003 5005 ATP ATP . S 4 ZN C 1 5001 5001 ZN ZN . T 5 ATP C 1 5002 5002 ATP ATP . U 5 ATP C 1 5003 5005 ATP ATP . V 4 ZN D 1 5001 5001 ZN ZN . W 5 ATP D 1 5002 5002 ATP ATP . X 5 ATP D 1 5003 5005 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . O 5 57.63 179.605 182.399 1 183.21 ? PG ATP 5003 A 1 HETATM 2 O O1G ATP . . . O 5 57.715 179.253 183.846 1 183.21 ? O1G ATP 5003 A 1 HETATM 3 O O2G ATP . . . O 5 58.993 179.869 181.749 1 183.21 ? O2G ATP 5003 A 1 HETATM 4 O O3G ATP . . . O 5 56.699 180.787 182.107 1 183.21 ? O3G ATP 5003 A 1 HETATM 5 P PB ATP . . . O 5 56.169 178.132 180.235 1 183.21 ? PB ATP 5003 A 1 HETATM 6 O O1B ATP . . . O 5 54.89 178.871 180.244 1 183.21 ? O1B ATP 5003 A 1 HETATM 7 O O2B ATP . . . O 5 57.09 178.412 179.047 1 183.21 ? O2B ATP 5003 A 1 HETATM 8 O O3B ATP . . . O 5 57.013 178.39 181.56 1 183.21 ? O3B ATP 5003 A 1 HETATM 9 P PA ATP . . . O 5 54.74 175.57 180.636 1 183.21 ? PA ATP 5003 A 1 HETATM 10 O O1A ATP . . . O 5 53.55 175.86 179.811 1 183.21 ? O1A ATP 5003 A 1 HETATM 11 O O2A ATP . . . O 5 54.514 175.643 182.146 1 183.21 ? O2A ATP 5003 A 1 HETATM 12 O O3A ATP . . . O 5 55.942 176.557 180.296 1 183.21 ? O3A ATP 5003 A 1 HETATM 13 O O5' ATP . . . O 5 55.339 174.151 180.29 1 183.21 ? O5' ATP 5003 A 1 HETATM 14 C C5' ATP . . . O 5 55.564 173.162 181.317 1 183.21 ? C5' ATP 5003 A 1 HETATM 15 C C4' ATP . . . O 5 54.78 171.918 180.981 1 183.21 ? C4' ATP 5003 A 1 HETATM 16 O O4' ATP . . . O 5 55.288 170.81 181.752 1 183.21 ? O4' ATP 5003 A 1 HETATM 17 C C3' ATP . . . O 5 53.297 171.974 181.322 1 183.21 ? C3' ATP 5003 A 1 HETATM 18 O O3' ATP . . . O 5 52.555 171.059 180.524 1 183.21 ? O3' ATP 5003 A 1 HETATM 19 C C2' ATP . . . O 5 53.29 171.573 182.798 1 183.21 ? C2' ATP 5003 A 1 HETATM 20 O O2' ATP . . . O 5 52.06 170.963 183.173 1 183.21 ? O2' ATP 5003 A 1 HETATM 21 C C1' ATP . . . O 5 54.435 170.553 182.857 1 183.21 ? C1' ATP 5003 A 1 HETATM 22 N N9 ATP . . . O 5 55.232 170.628 184.076 1 183.21 ? N9 ATP 5003 A 1 HETATM 23 C C8 ATP . . . O 5 55.672 171.762 184.708 1 183.21 ? C8 ATP 5003 A 1 HETATM 24 N N7 ATP . . . O 5 56.375 171.534 185.79 1 183.21 ? N7 ATP 5003 A 1 HETATM 25 C C5 ATP . . . O 5 56.401 170.15 185.879 1 183.21 ? C5 ATP 5003 A 1 HETATM 26 C C6 ATP . . . O 5 56.988 169.267 186.806 1 183.21 ? C6 ATP 5003 A 1 HETATM 27 N N6 ATP . . . O 5 57.693 169.666 187.87 1 183.21 ? N6 ATP 5003 A 1 HETATM 28 N N1 ATP . . . O 5 56.825 167.941 186.602 1 183.21 ? N1 ATP 5003 A 1 HETATM 29 C C2 ATP . . . O 5 56.122 167.536 185.542 1 183.21 ? C2 ATP 5003 A 1 HETATM 30 N N3 ATP . . . O 5 55.524 168.272 184.602 1 183.21 ? N3 ATP 5003 A 1 HETATM 31 C C4 ATP . . . O 5 55.701 169.578 184.828 1 183.21 ? C4 ATP 5003 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 464 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #