data_7UA4 # _model_server_result.job_id nlsWvDysi17dwgbTNt0KyA _model_server_result.datetime_utc '2025-03-06 03:31:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ua4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"EA","auth_seq_id":5004}' # _entry.id 7UA4 # _exptl.entry_id 7UA4 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 152.111 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description XANTHINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7UA4 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UA4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 P N N ? 7 U N N ? 7 Z N N ? 7 EA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 I SG CYS 4806 A CYS 4806 1_555 I SG CYS 4812 A CYS 4812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 J SG CYS 4806 B CYS 4806 1_555 J SG CYS 4812 B CYS 4812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 K SG CYS 4806 C CYS 4806 1_555 K SG CYS 4812 C CYS 4812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 L SG CYS 4806 D CYS 4806 1_555 L SG CYS 4812 D CYS 4812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 I OE1 GLU 3848 A GLU 3848 1_555 O CA CA . A CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.124 ? metalc ? metalc2 I OE2 GLU 3848 A GLU 3848 1_555 O CA CA . A CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc3 I OE1 GLU 3922 A GLU 3922 1_555 O CA CA . A CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc4 I OE2 GLU 3922 A GLU 3922 1_555 O CA CA . A CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.019 ? metalc ? metalc5 I SG CYS 4888 A CYS 4888 1_555 M ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc6 I SG CYS 4891 A CYS 4891 1_555 M ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc7 I NE2 HIS 4908 A HIS 4908 1_555 M ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc8 I ND1 HIS 4913 A HIS 4913 1_555 M ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc9 I O THR 4931 A THR 4931 1_555 O CA CA . A CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc10 J OE1 GLU 3848 B GLU 3848 1_555 T CA CA . B CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.123 ? metalc ? metalc11 J OE2 GLU 3848 B GLU 3848 1_555 T CA CA . B CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc12 J OE1 GLU 3922 B GLU 3922 1_555 T CA CA . B CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc13 J OE2 GLU 3922 B GLU 3922 1_555 T CA CA . B CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.019 ? metalc ? metalc14 J SG CYS 4888 B CYS 4888 1_555 R ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc15 J SG CYS 4891 B CYS 4891 1_555 R ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc16 J NE2 HIS 4908 B HIS 4908 1_555 R ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc17 J ND1 HIS 4913 B HIS 4913 1_555 R ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc18 J O THR 4931 B THR 4931 1_555 T CA CA . B CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc19 K OE1 GLU 3848 C GLU 3848 1_555 Y CA CA . C CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.124 ? metalc ? metalc20 K OE2 GLU 3848 C GLU 3848 1_555 Y CA CA . C CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc21 K OE1 GLU 3922 C GLU 3922 1_555 Y CA CA . C CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc22 K OE2 GLU 3922 C GLU 3922 1_555 Y CA CA . C CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.019 ? metalc ? metalc23 K SG CYS 4888 C CYS 4888 1_555 W ZN ZN . C ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc24 K SG CYS 4891 C CYS 4891 1_555 W ZN ZN . C ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc25 K NE2 HIS 4908 C HIS 4908 1_555 W ZN ZN . C ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc26 K ND1 HIS 4913 C HIS 4913 1_555 W ZN ZN . C ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc27 K O THR 4931 C THR 4931 1_555 Y CA CA . C CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc28 L OE1 GLU 3848 D GLU 3848 1_555 DA CA CA . D CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.124 ? metalc ? metalc29 L OE2 GLU 3848 D GLU 3848 1_555 DA CA CA . D CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc30 L OE1 GLU 3922 D GLU 3922 1_555 DA CA CA . D CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc31 L OE2 GLU 3922 D GLU 3922 1_555 DA CA CA . D CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.018 ? metalc ? metalc32 L SG CYS 4888 D CYS 4888 1_555 BA ZN ZN . D ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc33 L SG CYS 4891 D CYS 4891 1_555 BA ZN ZN . D ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc34 L NE2 HIS 4908 D HIS 4908 1_555 BA ZN ZN . D ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc35 L ND1 HIS 4913 D HIS 4913 1_555 BA ZN ZN . D ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc36 L O THR 4931 D THR 4931 1_555 DA CA CA . D CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? # _chem_comp.formula 'C5 H4 N4 O2' _chem_comp.formula_weight 152.111 _chem_comp.id XAN _chem_comp.mon_nstd_flag . _chem_comp.name XANTHINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C4 XAN sing 425 n y N9 C8 XAN sing 426 n y N9 HN9 XAN sing 427 n n C4 N3 XAN sing 428 n y C4 C5 XAN doub 429 n y N3 C2 XAN sing 430 n y N3 HN3 XAN sing 431 n n C2 O2 XAN doub 432 n n C2 N1 XAN sing 433 n y N1 C6 XAN sing 434 n y N1 HN1 XAN sing 435 n n C6 O6 XAN doub 436 n n C6 C5 XAN sing 437 n y C5 N7 XAN sing 438 n y N7 C8 XAN doub 439 n y C8 H8 XAN sing 440 n n # _atom_sites.entry_id 7UA4 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 4 ZN A 1 5001 5001 ZN ZN . N 5 ATP A 1 5002 5002 ATP ATP . O 6 CA A 1 5003 5003 CA CA . P 7 XAN A 1 5004 5004 XAN XAN . Q 5 ATP A 1 5005 5005 ATP ATP . R 4 ZN B 1 5001 5001 ZN ZN . S 5 ATP B 1 5002 5002 ATP ATP . T 6 CA B 1 5003 5003 CA CA . U 7 XAN B 1 5004 5004 XAN XAN . V 5 ATP B 1 5005 5005 ATP ATP . W 4 ZN C 1 5001 5001 ZN ZN . X 5 ATP C 1 5002 5002 ATP ATP . Y 6 CA C 1 5003 5003 CA CA . Z 7 XAN C 1 5004 5004 XAN XAN . AA 5 ATP C 1 5005 5005 ATP ATP . BA 4 ZN D 1 5001 5001 ZN ZN . CA 5 ATP D 1 5002 5002 ATP ATP . DA 6 CA D 1 5003 5003 CA CA . EA 7 XAN D 1 5004 5004 XAN XAN . FA 5 ATP D 1 5005 5005 ATP ATP . GA 8 HOH A 1 5101 5008 HOH HOH . GA 8 HOH A 2 5102 5006 HOH HOH . GA 8 HOH A 3 5103 5007 HOH HOH . HA 8 HOH B 1 5101 5008 HOH HOH . HA 8 HOH B 2 5102 5006 HOH HOH . HA 8 HOH B 3 5103 5007 HOH HOH . IA 8 HOH C 1 5101 5008 HOH HOH . IA 8 HOH C 2 5102 5006 HOH HOH . IA 8 HOH C 3 5103 5007 HOH HOH . JA 8 HOH D 1 5101 5008 HOH HOH . JA 8 HOH D 2 5102 5006 HOH HOH . JA 8 HOH D 3 5103 5007 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 XAN . . . EA 7 198.398 170.509 247.036 1 89.74 ? N9 XAN 5004 D 1 HETATM 2 C C4 XAN . . . EA 7 199.381 171.377 246.654 1 89.74 ? C4 XAN 5004 D 1 HETATM 3 N N3 XAN . . . EA 7 200.225 171.377 245.631 1 89.74 ? N3 XAN 5004 D 1 HETATM 4 C C2 XAN . . . EA 7 201.126 172.386 245.471 1 89.74 ? C2 XAN 5004 D 1 HETATM 5 O O2 XAN . . . EA 7 201.907 172.351 244.539 1 89.74 ? O2 XAN 5004 D 1 HETATM 6 N N1 XAN . . . EA 7 201.157 173.383 246.408 1 89.74 ? N1 XAN 5004 D 1 HETATM 7 C C6 XAN . . . EA 7 200.3 173.448 247.499 1 89.74 ? C6 XAN 5004 D 1 HETATM 8 O O6 XAN . . . EA 7 200.381 174.389 248.282 1 89.74 ? O6 XAN 5004 D 1 HETATM 9 C C5 XAN . . . EA 7 199.393 172.38 247.582 1 89.74 ? C5 XAN 5004 D 1 HETATM 10 N N7 XAN . . . EA 7 198.414 172.135 248.534 1 89.74 ? N7 XAN 5004 D 1 HETATM 11 C C8 XAN . . . EA 7 197.856 171.014 248.149 1 89.74 ? C8 XAN 5004 D 1 # _model_server_stats.io_time_ms 188 _model_server_stats.parse_time_ms 93 _model_server_stats.create_model_time_ms 145 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 11 #