data_7UA4 # _model_server_result.job_id 9FOmCdXBACjVRshF0g0BdA _model_server_result.datetime_utc '2025-03-06 03:26:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ua4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":5005}' # _entry.id 7UA4 # _exptl.entry_id 7UA4 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7UA4 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UA4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 N N N ? 5 Q N N ? 5 S N N ? 5 V N N ? 5 X N N ? 5 AA N N ? 5 CA N N ? 5 FA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 I SG CYS 4806 A CYS 4806 1_555 I SG CYS 4812 A CYS 4812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 J SG CYS 4806 B CYS 4806 1_555 J SG CYS 4812 B CYS 4812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 K SG CYS 4806 C CYS 4806 1_555 K SG CYS 4812 C CYS 4812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 L SG CYS 4806 D CYS 4806 1_555 L SG CYS 4812 D CYS 4812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 I OE1 GLU 3848 A GLU 3848 1_555 O CA CA . A CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.124 ? metalc ? metalc2 I OE2 GLU 3848 A GLU 3848 1_555 O CA CA . A CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc3 I OE1 GLU 3922 A GLU 3922 1_555 O CA CA . A CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc4 I OE2 GLU 3922 A GLU 3922 1_555 O CA CA . A CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.019 ? metalc ? metalc5 I SG CYS 4888 A CYS 4888 1_555 M ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc6 I SG CYS 4891 A CYS 4891 1_555 M ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc7 I NE2 HIS 4908 A HIS 4908 1_555 M ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc8 I ND1 HIS 4913 A HIS 4913 1_555 M ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc9 I O THR 4931 A THR 4931 1_555 O CA CA . A CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc10 J OE1 GLU 3848 B GLU 3848 1_555 T CA CA . B CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.123 ? metalc ? metalc11 J OE2 GLU 3848 B GLU 3848 1_555 T CA CA . B CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc12 J OE1 GLU 3922 B GLU 3922 1_555 T CA CA . B CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc13 J OE2 GLU 3922 B GLU 3922 1_555 T CA CA . B CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.019 ? metalc ? metalc14 J SG CYS 4888 B CYS 4888 1_555 R ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc15 J SG CYS 4891 B CYS 4891 1_555 R ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc16 J NE2 HIS 4908 B HIS 4908 1_555 R ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc17 J ND1 HIS 4913 B HIS 4913 1_555 R ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc18 J O THR 4931 B THR 4931 1_555 T CA CA . B CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc19 K OE1 GLU 3848 C GLU 3848 1_555 Y CA CA . C CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.124 ? metalc ? metalc20 K OE2 GLU 3848 C GLU 3848 1_555 Y CA CA . C CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc21 K OE1 GLU 3922 C GLU 3922 1_555 Y CA CA . C CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc22 K OE2 GLU 3922 C GLU 3922 1_555 Y CA CA . C CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.019 ? metalc ? metalc23 K SG CYS 4888 C CYS 4888 1_555 W ZN ZN . C ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc24 K SG CYS 4891 C CYS 4891 1_555 W ZN ZN . C ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc25 K NE2 HIS 4908 C HIS 4908 1_555 W ZN ZN . C ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc26 K ND1 HIS 4913 C HIS 4913 1_555 W ZN ZN . C ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc27 K O THR 4931 C THR 4931 1_555 Y CA CA . C CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc28 L OE1 GLU 3848 D GLU 3848 1_555 DA CA CA . D CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.124 ? metalc ? metalc29 L OE2 GLU 3848 D GLU 3848 1_555 DA CA CA . D CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc30 L OE1 GLU 3922 D GLU 3922 1_555 DA CA CA . D CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc31 L OE2 GLU 3922 D GLU 3922 1_555 DA CA CA . D CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.018 ? metalc ? metalc32 L SG CYS 4888 D CYS 4888 1_555 BA ZN ZN . D ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc33 L SG CYS 4891 D CYS 4891 1_555 BA ZN ZN . D ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc34 L NE2 HIS 4908 D HIS 4908 1_555 BA ZN ZN . D ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc35 L ND1 HIS 4913 D HIS 4913 1_555 BA ZN ZN . D ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc36 L O THR 4931 D THR 4931 1_555 DA CA CA . D CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 7UA4 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 4 ZN A 1 5001 5001 ZN ZN . N 5 ATP A 1 5002 5002 ATP ATP . O 6 CA A 1 5003 5003 CA CA . P 7 XAN A 1 5004 5004 XAN XAN . Q 5 ATP A 1 5005 5005 ATP ATP . R 4 ZN B 1 5001 5001 ZN ZN . S 5 ATP B 1 5002 5002 ATP ATP . T 6 CA B 1 5003 5003 CA CA . U 7 XAN B 1 5004 5004 XAN XAN . V 5 ATP B 1 5005 5005 ATP ATP . W 4 ZN C 1 5001 5001 ZN ZN . X 5 ATP C 1 5002 5002 ATP ATP . Y 6 CA C 1 5003 5003 CA CA . Z 7 XAN C 1 5004 5004 XAN XAN . AA 5 ATP C 1 5005 5005 ATP ATP . BA 4 ZN D 1 5001 5001 ZN ZN . CA 5 ATP D 1 5002 5002 ATP ATP . DA 6 CA D 1 5003 5003 CA CA . EA 7 XAN D 1 5004 5004 XAN XAN . FA 5 ATP D 1 5005 5005 ATP ATP . GA 8 HOH A 1 5101 5008 HOH HOH . GA 8 HOH A 2 5102 5006 HOH HOH . GA 8 HOH A 3 5103 5007 HOH HOH . HA 8 HOH B 1 5101 5008 HOH HOH . HA 8 HOH B 2 5102 5006 HOH HOH . HA 8 HOH B 3 5103 5007 HOH HOH . IA 8 HOH C 1 5101 5008 HOH HOH . IA 8 HOH C 2 5102 5006 HOH HOH . IA 8 HOH C 3 5103 5007 HOH HOH . JA 8 HOH D 1 5101 5008 HOH HOH . JA 8 HOH D 2 5102 5006 HOH HOH . JA 8 HOH D 3 5103 5007 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . Q 5 57.098 172.27 183.807 1 257.29 ? PG ATP 5005 A 1 HETATM 2 O O1G ATP . . . Q 5 58.199 172.078 182.801 1 257.29 ? O1G ATP 5005 A 1 HETATM 3 O O2G ATP . . . Q 5 57.295 173.491 184.674 1 257.29 ? O2G ATP 5005 A 1 HETATM 4 O O3G ATP . . . Q 5 56.837 171.022 184.615 1 257.29 ? O3G ATP 5005 A 1 HETATM 5 P PB ATP . . . Q 5 54.919 171.546 182.008 1 257.29 ? PB ATP 5005 A 1 HETATM 6 O O1B ATP . . . Q 5 53.896 172.314 181.24 1 257.29 ? O1B ATP 5005 A 1 HETATM 7 O O2B ATP . . . Q 5 55.881 170.671 181.284 1 257.29 ? O2B ATP 5005 A 1 HETATM 8 O O3B ATP . . . Q 5 55.766 172.541 182.933 1 257.29 ? O3B ATP 5005 A 1 HETATM 9 P PA ATP . . . Q 5 53.204 171.011 184.344 1 257.29 ? PA ATP 5005 A 1 HETATM 10 O O1A ATP . . . Q 5 52.917 169.74 185.069 1 257.29 ? O1A ATP 5005 A 1 HETATM 11 O O2A ATP . . . Q 5 52.058 171.826 183.844 1 257.29 ? O2A ATP 5005 A 1 HETATM 12 O O3A ATP . . . Q 5 54.174 170.667 183.117 1 257.29 ? O3A ATP 5005 A 1 HETATM 13 O O5' ATP . . . Q 5 54.166 171.93 185.24 1 257.29 ? O5' ATP 5005 A 1 HETATM 14 C C5' ATP . . . Q 5 53.615 172.984 186.062 1 257.29 ? C5' ATP 5005 A 1 HETATM 15 C C4' ATP . . . Q 5 54.117 172.824 187.477 1 257.29 ? C4' ATP 5005 A 1 HETATM 16 O O4' ATP . . . Q 5 52.988 172.696 188.377 1 257.29 ? O4' ATP 5005 A 1 HETATM 17 C C3' ATP . . . Q 5 54.989 171.592 187.749 1 257.29 ? C3' ATP 5005 A 1 HETATM 18 O O3' ATP . . . Q 5 55.959 171.871 188.75 1 257.29 ? O3' ATP 5005 A 1 HETATM 19 C C2' ATP . . . Q 5 53.968 170.535 188.189 1 257.29 ? C2' ATP 5005 A 1 HETATM 20 O O2' ATP . . . Q 5 54.512 169.599 189.096 1 257.29 ? O2' ATP 5005 A 1 HETATM 21 C C1' ATP . . . Q 5 52.853 171.365 188.826 1 257.29 ? C1' ATP 5005 A 1 HETATM 22 N N9 ATP . . . Q 5 51.523 170.901 188.45 1 257.29 ? N9 ATP 5005 A 1 HETATM 23 C C8 ATP . . . Q 5 50.914 171.021 187.225 1 257.29 ? C8 ATP 5005 A 1 HETATM 24 N N7 ATP . . . Q 5 49.711 170.496 187.203 1 257.29 ? N7 ATP 5005 A 1 HETATM 25 C C5 ATP . . . Q 5 49.522 170.003 188.489 1 257.29 ? C5 ATP 5005 A 1 HETATM 26 C C6 ATP . . . Q 5 48.449 169.329 189.099 1 257.29 ? C6 ATP 5005 A 1 HETATM 27 N N6 ATP . . . Q 5 47.316 169.032 188.471 1 257.29 ? N6 ATP 5005 A 1 HETATM 28 N N1 ATP . . . Q 5 48.593 168.975 190.399 1 257.29 ? N1 ATP 5005 A 1 HETATM 29 C C2 ATP . . . Q 5 49.738 169.286 191.023 1 257.29 ? C2 ATP 5005 A 1 HETATM 30 N N3 ATP . . . Q 5 50.812 169.916 190.552 1 257.29 ? N3 ATP 5005 A 1 HETATM 31 C C4 ATP . . . Q 5 50.636 170.248 189.263 1 257.29 ? C4 ATP 5005 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 498 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 31 #