data_7UA9 # _model_server_result.job_id 8ZRiBdGo-CERC7_3NXJ7sg _model_server_result.datetime_utc '2025-03-06 03:43:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ua9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":5002}' # _entry.id 7UA9 # _exptl.entry_id 7UA9 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7UA9 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UA9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 M N N ? 4 O N N ? 4 R N N ? 4 T N N ? 4 W N N ? 4 Y N N ? 4 BA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 36 A CYS 36 1_555 E SG CYS 65 A CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 E SG CYS 4806 A CYS 4806 1_555 E SG CYS 4812 A CYS 4812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 F SG CYS 36 B CYS 36 1_555 F SG CYS 65 B CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 F SG CYS 4806 B CYS 4806 1_555 F SG CYS 4812 B CYS 4812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 G SG CYS 36 C CYS 36 1_555 G SG CYS 65 C CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 G SG CYS 4806 C CYS 4806 1_555 G SG CYS 4812 C CYS 4812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 H SG CYS 36 D CYS 36 1_555 H SG CYS 65 D CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 H SG CYS 4806 D CYS 4806 1_555 H SG CYS 4812 D CYS 4812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 E OE1 GLU 3848 A GLU 3848 1_555 K CA CA . A CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? metalc ? metalc2 E OE2 GLU 3848 A GLU 3848 1_555 K CA CA . A CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc3 E OE1 GLU 3922 A GLU 3922 1_555 K CA CA . A CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc4 E OE2 GLU 3922 A GLU 3922 1_555 K CA CA . A CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc5 E SG CYS 4888 A CYS 4888 1_555 I ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc6 E SG CYS 4891 A CYS 4891 1_555 I ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc7 E NE2 HIS 4908 A HIS 4908 1_555 I ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc8 E ND1 HIS 4913 A HIS 4913 1_555 I ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc9 E O THR 4931 A THR 4931 1_555 K CA CA . A CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc10 F OE1 GLU 3848 B GLU 3848 1_555 P CA CA . B CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc11 F OE2 GLU 3848 B GLU 3848 1_555 P CA CA . B CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc12 F OE1 GLU 3922 B GLU 3922 1_555 P CA CA . B CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc13 F OE2 GLU 3922 B GLU 3922 1_555 P CA CA . B CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc14 F SG CYS 4888 B CYS 4888 1_555 N ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc15 F SG CYS 4891 B CYS 4891 1_555 N ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc16 F NE2 HIS 4908 B HIS 4908 1_555 N ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc17 F ND1 HIS 4913 B HIS 4913 1_555 N ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc18 F O THR 4931 B THR 4931 1_555 P CA CA . B CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc19 G OE1 GLU 3848 C GLU 3848 1_555 U CA CA . C CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc20 G OE2 GLU 3848 C GLU 3848 1_555 U CA CA . C CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc21 G OE1 GLU 3922 C GLU 3922 1_555 U CA CA . C CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc22 G OE2 GLU 3922 C GLU 3922 1_555 U CA CA . C CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc23 G SG CYS 4888 C CYS 4888 1_555 S ZN ZN . C ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc24 G SG CYS 4891 C CYS 4891 1_555 S ZN ZN . C ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc25 G NE2 HIS 4908 C HIS 4908 1_555 S ZN ZN . C ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc26 G ND1 HIS 4913 C HIS 4913 1_555 S ZN ZN . C ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc27 G O THR 4931 C THR 4931 1_555 U CA CA . C CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc28 H OE1 GLU 3848 D GLU 3848 1_555 Z CA CA . D CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc29 H OE2 GLU 3848 D GLU 3848 1_555 Z CA CA . D CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc30 H OE1 GLU 3922 D GLU 3922 1_555 Z CA CA . D CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc31 H OE2 GLU 3922 D GLU 3922 1_555 Z CA CA . D CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc32 H SG CYS 4888 D CYS 4888 1_555 X ZN ZN . D ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc33 H SG CYS 4891 D CYS 4891 1_555 X ZN ZN . D ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc34 H NE2 HIS 4908 D HIS 4908 1_555 X ZN ZN . D ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc35 H ND1 HIS 4913 D HIS 4913 1_555 X ZN ZN . D ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc36 H O THR 4931 D THR 4931 1_555 Z CA CA . D CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 7UA9 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 ZN A 1 5001 5001 ZN ZN . J 4 ATP A 1 5002 5002 ATP ATP . K 5 CA A 1 5003 5003 CA CA . L 6 XAN A 1 5004 5004 XAN XAN . M 4 ATP A 1 5005 5005 ATP ATP . N 3 ZN B 1 5001 5001 ZN ZN . O 4 ATP B 1 5002 5002 ATP ATP . P 5 CA B 1 5003 5003 CA CA . Q 6 XAN B 1 5004 5004 XAN XAN . R 4 ATP B 1 5005 5005 ATP ATP . S 3 ZN C 1 5001 5001 ZN ZN . T 4 ATP C 1 5002 5002 ATP ATP . U 5 CA C 1 5003 5003 CA CA . V 6 XAN C 1 5004 5004 XAN XAN . W 4 ATP C 1 5005 5005 ATP ATP . X 3 ZN D 1 5001 5001 ZN ZN . Y 4 ATP D 1 5002 5002 ATP ATP . Z 5 CA D 1 5003 5003 CA CA . AA 6 XAN D 1 5004 5004 XAN XAN . BA 4 ATP D 1 5005 5005 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . O 4 243.602 219.369 258.445 1 164.93 ? PG ATP 5002 B 1 HETATM 2 O O1G ATP . . . O 4 244.363 219.14 257.183 1 164.93 ? O1G ATP 5002 B 1 HETATM 3 O O2G ATP . . . O 4 244.083 218.508 259.619 1 164.93 ? O2G ATP 5002 B 1 HETATM 4 O O3G ATP . . . O 4 243.567 220.837 258.884 1 164.93 ? O3G ATP 5002 B 1 HETATM 5 P PB ATP . . . O 4 241.031 217.856 258.73 1 164.93 ? PB ATP 5002 B 1 HETATM 6 O O1B ATP . . . O 4 241.315 216.543 258.116 1 164.93 ? O1B ATP 5002 B 1 HETATM 7 O O2B ATP . . . O 4 241.005 217.88 260.258 1 164.93 ? O2B ATP 5002 B 1 HETATM 8 O O3B ATP . . . O 4 242.065 218.97 258.258 1 164.93 ? O3B ATP 5002 B 1 HETATM 9 P PA ATP . . . O 4 239.151 219.816 257.546 1 164.93 ? PA ATP 5002 B 1 HETATM 10 O O1A ATP . . . O 4 239.957 220.972 257.988 1 164.93 ? O1A ATP 5002 B 1 HETATM 11 O O2A ATP . . . O 4 237.652 219.934 257.827 1 164.93 ? O2A ATP 5002 B 1 HETATM 12 O O3A ATP . . . O 4 239.648 218.463 258.225 1 164.93 ? O3A ATP 5002 B 1 HETATM 13 O O5' ATP . . . O 4 239.347 219.542 256.003 1 164.93 ? O5' ATP 5002 B 1 HETATM 14 C C5' ATP . . . O 4 239.534 218.205 255.495 1 164.93 ? C5' ATP 5002 B 1 HETATM 15 C C4' ATP . . . O 4 238.216 217.472 255.537 1 164.93 ? C4' ATP 5002 B 1 HETATM 16 O O4' ATP . . . O 4 237.171 218.326 255.02 1 164.93 ? O4' ATP 5002 B 1 HETATM 17 C C3' ATP . . . O 4 238.157 216.192 254.707 1 164.93 ? C3' ATP 5002 B 1 HETATM 18 O O3' ATP . . . O 4 237.307 215.226 255.315 1 164.93 ? O3' ATP 5002 B 1 HETATM 19 C C2' ATP . . . O 4 237.594 216.686 253.374 1 164.93 ? C2' ATP 5002 B 1 HETATM 20 O O2' ATP . . . O 4 236.906 215.655 252.675 1 164.93 ? O2' ATP 5002 B 1 HETATM 21 C C1' ATP . . . O 4 236.617 217.764 253.844 1 164.93 ? C1' ATP 5002 B 1 HETATM 22 N N9 ATP . . . O 4 236.402 218.836 252.878 1 164.93 ? N9 ATP 5002 B 1 HETATM 23 C C8 ATP . . . O 4 235.217 219.19 252.288 1 164.93 ? C8 ATP 5002 B 1 HETATM 24 N N7 ATP . . . O 4 235.314 220.196 251.454 1 164.93 ? N7 ATP 5002 B 1 HETATM 25 C C5 ATP . . . O 4 236.659 220.531 251.498 1 164.93 ? C5 ATP 5002 B 1 HETATM 26 C C6 ATP . . . O 4 237.414 221.52 250.839 1 164.93 ? C6 ATP 5002 B 1 HETATM 27 N N6 ATP . . . O 4 236.898 222.392 249.968 1 164.93 ? N6 ATP 5002 B 1 HETATM 28 N N1 ATP . . . O 4 238.737 221.584 251.107 1 164.93 ? N1 ATP 5002 B 1 HETATM 29 C C2 ATP . . . O 4 239.259 220.715 251.977 1 164.93 ? C2 ATP 5002 B 1 HETATM 30 N N3 ATP . . . O 4 238.648 219.742 252.656 1 164.93 ? N3 ATP 5002 B 1 HETATM 31 C C4 ATP . . . O 4 237.342 219.701 252.372 1 164.93 ? C4 ATP 5002 B 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 228 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 31 #