data_7UAT # _model_server_result.job_id jBjPnG-p3vGelqW6GLfEJQ _model_server_result.datetime_utc '2024-11-23 20:22:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7uat # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7UAT # _exptl.entry_id 7UAT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7UAT _cell.length_a 124.01 _cell.length_b 124.01 _cell.length_c 83.445 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UAT _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLP doub 260 n y N1 C6 PLP sing 261 n y C2 C2A PLP sing 262 n n C2 C3 PLP sing 263 n y C2A H2A1 PLP sing 264 n n C2A H2A2 PLP sing 265 n n C2A H2A3 PLP sing 266 n n C3 O3 PLP sing 267 n n C3 C4 PLP doub 268 n y O3 HO3 PLP sing 269 n n C4 C4A PLP sing 270 n n C4 C5 PLP sing 271 n y C4A O4A PLP doub 272 n n C4A H4A PLP sing 273 n n C5 C6 PLP doub 274 n y C5 C5A PLP sing 275 n n C6 H6 PLP sing 276 n n C5A O4P PLP sing 277 n n C5A H5A1 PLP sing 278 n n C5A H5A2 PLP sing 279 n n O4P P PLP sing 280 n n P O1P PLP doub 281 n n P O2P PLP sing 282 n n P O3P PLP sing 283 n n O2P HOP2 PLP sing 284 n n O3P HOP3 PLP sing 285 n n # _atom_sites.entry_id 7UAT _atom_sites.fract_transf_matrix[1][1] 0.008064 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008064 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011984 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLP A 1 301 306 PLP PLP . C 3 PO4 A 1 302 1 PO4 PO4 . D 3 PO4 A 1 303 2 PO4 PO4 . E 3 PO4 A 1 304 3 PO4 PO4 . F 4 HOH A 1 401 131 HOH HOH . F 4 HOH A 2 402 77 HOH HOH . F 4 HOH A 3 403 103 HOH HOH . F 4 HOH A 4 404 100 HOH HOH . F 4 HOH A 5 405 155 HOH HOH . F 4 HOH A 6 406 197 HOH HOH . F 4 HOH A 7 407 38 HOH HOH . F 4 HOH A 8 408 125 HOH HOH . F 4 HOH A 9 409 15 HOH HOH . F 4 HOH A 10 410 196 HOH HOH . F 4 HOH A 11 411 30 HOH HOH . F 4 HOH A 12 412 42 HOH HOH . F 4 HOH A 13 413 173 HOH HOH . F 4 HOH A 14 414 188 HOH HOH . F 4 HOH A 15 415 113 HOH HOH . F 4 HOH A 16 416 144 HOH HOH . F 4 HOH A 17 417 72 HOH HOH . F 4 HOH A 18 418 104 HOH HOH . F 4 HOH A 19 419 182 HOH HOH . F 4 HOH A 20 420 124 HOH HOH . F 4 HOH A 21 421 136 HOH HOH . F 4 HOH A 22 422 74 HOH HOH . F 4 HOH A 23 423 154 HOH HOH . F 4 HOH A 24 424 91 HOH HOH . F 4 HOH A 25 425 163 HOH HOH . F 4 HOH A 26 426 99 HOH HOH . F 4 HOH A 27 427 53 HOH HOH . F 4 HOH A 28 428 156 HOH HOH . F 4 HOH A 29 429 135 HOH HOH . F 4 HOH A 30 430 3 HOH HOH . F 4 HOH A 31 431 107 HOH HOH . F 4 HOH A 32 432 78 HOH HOH . F 4 HOH A 33 433 79 HOH HOH . F 4 HOH A 34 434 95 HOH HOH . F 4 HOH A 35 435 45 HOH HOH . F 4 HOH A 36 436 5 HOH HOH . F 4 HOH A 37 437 9 HOH HOH . F 4 HOH A 38 438 106 HOH HOH . F 4 HOH A 39 439 85 HOH HOH . F 4 HOH A 40 440 54 HOH HOH . F 4 HOH A 41 441 32 HOH HOH . F 4 HOH A 42 442 52 HOH HOH . F 4 HOH A 43 443 10 HOH HOH . F 4 HOH A 44 444 41 HOH HOH . F 4 HOH A 45 445 6 HOH HOH . F 4 HOH A 46 446 58 HOH HOH . F 4 HOH A 47 447 98 HOH HOH . F 4 HOH A 48 448 28 HOH HOH . F 4 HOH A 49 449 82 HOH HOH . F 4 HOH A 50 450 75 HOH HOH . F 4 HOH A 51 451 1 HOH HOH . F 4 HOH A 52 452 12 HOH HOH . F 4 HOH A 53 453 94 HOH HOH . F 4 HOH A 54 454 112 HOH HOH . F 4 HOH A 55 455 33 HOH HOH . F 4 HOH A 56 456 18 HOH HOH . F 4 HOH A 57 457 192 HOH HOH . F 4 HOH A 58 458 87 HOH HOH . F 4 HOH A 59 459 69 HOH HOH . F 4 HOH A 60 460 160 HOH HOH . F 4 HOH A 61 461 17 HOH HOH . F 4 HOH A 62 462 164 HOH HOH . F 4 HOH A 63 463 88 HOH HOH . F 4 HOH A 64 464 39 HOH HOH . F 4 HOH A 65 465 122 HOH HOH . F 4 HOH A 66 466 63 HOH HOH . F 4 HOH A 67 467 37 HOH HOH . F 4 HOH A 68 468 26 HOH HOH . F 4 HOH A 69 469 141 HOH HOH . F 4 HOH A 70 470 137 HOH HOH . F 4 HOH A 71 471 96 HOH HOH . F 4 HOH A 72 472 46 HOH HOH . F 4 HOH A 73 473 118 HOH HOH . F 4 HOH A 74 474 117 HOH HOH . F 4 HOH A 75 475 200 HOH HOH . F 4 HOH A 76 476 31 HOH HOH . F 4 HOH A 77 477 92 HOH HOH . F 4 HOH A 78 478 169 HOH HOH . F 4 HOH A 79 479 101 HOH HOH . F 4 HOH A 80 480 73 HOH HOH . F 4 HOH A 81 481 2 HOH HOH . F 4 HOH A 82 482 25 HOH HOH . F 4 HOH A 83 483 102 HOH HOH . F 4 HOH A 84 484 16 HOH HOH . F 4 HOH A 85 485 4 HOH HOH . F 4 HOH A 86 486 34 HOH HOH . F 4 HOH A 87 487 109 HOH HOH . F 4 HOH A 88 488 68 HOH HOH . F 4 HOH A 89 489 35 HOH HOH . F 4 HOH A 90 490 49 HOH HOH . F 4 HOH A 91 491 24 HOH HOH . F 4 HOH A 92 492 61 HOH HOH . F 4 HOH A 93 493 59 HOH HOH . F 4 HOH A 94 494 149 HOH HOH . F 4 HOH A 95 495 7 HOH HOH . F 4 HOH A 96 496 65 HOH HOH . F 4 HOH A 97 497 56 HOH HOH . F 4 HOH A 98 498 76 HOH HOH . F 4 HOH A 99 499 14 HOH HOH . F 4 HOH A 100 500 47 HOH HOH . F 4 HOH A 101 501 116 HOH HOH . F 4 HOH A 102 502 115 HOH HOH . F 4 HOH A 103 503 19 HOH HOH . F 4 HOH A 104 504 89 HOH HOH . F 4 HOH A 105 505 108 HOH HOH . F 4 HOH A 106 506 67 HOH HOH . F 4 HOH A 107 507 110 HOH HOH . F 4 HOH A 108 508 22 HOH HOH . F 4 HOH A 109 509 179 HOH HOH . F 4 HOH A 110 510 185 HOH HOH . F 4 HOH A 111 511 128 HOH HOH . F 4 HOH A 112 512 143 HOH HOH . F 4 HOH A 113 513 8 HOH HOH . F 4 HOH A 114 514 194 HOH HOH . F 4 HOH A 115 515 165 HOH HOH . F 4 HOH A 116 516 142 HOH HOH . F 4 HOH A 117 517 127 HOH HOH . F 4 HOH A 118 518 186 HOH HOH . F 4 HOH A 119 519 153 HOH HOH . F 4 HOH A 120 520 168 HOH HOH . F 4 HOH A 121 521 140 HOH HOH . F 4 HOH A 122 522 48 HOH HOH . F 4 HOH A 123 523 111 HOH HOH . F 4 HOH A 124 524 29 HOH HOH . F 4 HOH A 125 525 70 HOH HOH . F 4 HOH A 126 526 157 HOH HOH . F 4 HOH A 127 527 162 HOH HOH . F 4 HOH A 128 528 171 HOH HOH . F 4 HOH A 129 529 93 HOH HOH . F 4 HOH A 130 530 133 HOH HOH . F 4 HOH A 131 531 121 HOH HOH . F 4 HOH A 132 532 150 HOH HOH . F 4 HOH A 133 533 44 HOH HOH . F 4 HOH A 134 534 126 HOH HOH . F 4 HOH A 135 535 114 HOH HOH . F 4 HOH A 136 536 27 HOH HOH . F 4 HOH A 137 537 175 HOH HOH . F 4 HOH A 138 538 198 HOH HOH . F 4 HOH A 139 539 147 HOH HOH . F 4 HOH A 140 540 13 HOH HOH . F 4 HOH A 141 541 84 HOH HOH . F 4 HOH A 142 542 66 HOH HOH . F 4 HOH A 143 543 57 HOH HOH . F 4 HOH A 144 544 43 HOH HOH . F 4 HOH A 145 545 105 HOH HOH . F 4 HOH A 146 546 62 HOH HOH . F 4 HOH A 147 547 55 HOH HOH . F 4 HOH A 148 548 139 HOH HOH . F 4 HOH A 149 549 201 HOH HOH . F 4 HOH A 150 550 129 HOH HOH . F 4 HOH A 151 551 60 HOH HOH . F 4 HOH A 152 552 159 HOH HOH . F 4 HOH A 153 553 189 HOH HOH . F 4 HOH A 154 554 138 HOH HOH . F 4 HOH A 155 555 181 HOH HOH . F 4 HOH A 156 556 161 HOH HOH . F 4 HOH A 157 557 183 HOH HOH . F 4 HOH A 158 558 40 HOH HOH . F 4 HOH A 159 559 97 HOH HOH . F 4 HOH A 160 560 120 HOH HOH . F 4 HOH A 161 561 193 HOH HOH . F 4 HOH A 162 562 174 HOH HOH . F 4 HOH A 163 563 191 HOH HOH . F 4 HOH A 164 564 199 HOH HOH . F 4 HOH A 165 565 170 HOH HOH . F 4 HOH A 166 566 90 HOH HOH . F 4 HOH A 167 567 132 HOH HOH . F 4 HOH A 168 568 187 HOH HOH . F 4 HOH A 169 569 119 HOH HOH . F 4 HOH A 170 570 152 HOH HOH . F 4 HOH A 171 571 177 HOH HOH . F 4 HOH A 172 572 180 HOH HOH . F 4 HOH A 173 573 167 HOH HOH . F 4 HOH A 174 574 195 HOH HOH . F 4 HOH A 175 575 148 HOH HOH . F 4 HOH A 176 576 184 HOH HOH . F 4 HOH A 177 577 158 HOH HOH . F 4 HOH A 178 578 151 HOH HOH . F 4 HOH A 179 579 50 HOH HOH . F 4 HOH A 180 580 176 HOH HOH . F 4 HOH A 181 581 36 HOH HOH . F 4 HOH A 182 582 21 HOH HOH . F 4 HOH A 183 583 83 HOH HOH . F 4 HOH A 184 584 178 HOH HOH . F 4 HOH A 185 585 166 HOH HOH . F 4 HOH A 186 586 64 HOH HOH . F 4 HOH A 187 587 80 HOH HOH . F 4 HOH A 188 588 146 HOH HOH . F 4 HOH A 189 589 23 HOH HOH . F 4 HOH A 190 590 86 HOH HOH . F 4 HOH A 191 591 145 HOH HOH . F 4 HOH A 192 592 71 HOH HOH . F 4 HOH A 193 593 123 HOH HOH . F 4 HOH A 194 594 172 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . B 2 87.082 1.556 6.675 1 42.09 ? N1 PLP 301 A 1 HETATM 2 C C2 PLP . . . B 2 86.802 1.347 5.338 1 47.17 ? C2 PLP 301 A 1 HETATM 3 C C2A PLP . . . B 2 86.216 2.436 4.488 1 43.41 ? C2A PLP 301 A 1 HETATM 4 C C3 PLP . . . B 2 87.054 0.112 4.762 1 47.19 ? C3 PLP 301 A 1 HETATM 5 O O3 PLP . . . B 2 86.768 -0.077 3.44 1 55.98 ? O3 PLP 301 A 1 HETATM 6 C C4 PLP . . . B 2 87.581 -0.936 5.509 1 55.14 ? C4 PLP 301 A 1 HETATM 7 C C4A PLP . . . B 2 87.368 -2.323 4.959 1 62.49 ? C4A PLP 301 A 1 HETATM 8 O O4A PLP . . . B 2 88.245 -3.184 5.007 1 69.04 ? O4A PLP 301 A 1 HETATM 9 C C5 PLP . . . B 2 87.879 -0.721 6.858 1 51.96 ? C5 PLP 301 A 1 HETATM 10 C C6 PLP . . . B 2 87.614 0.523 7.428 1 45.11 ? C6 PLP 301 A 1 HETATM 11 C C5A PLP . . . B 2 88.46 -1.826 7.722 1 54.84 ? C5A PLP 301 A 1 HETATM 12 O O4P PLP . . . B 2 89.529 -1.34 8.51 1 51 ? O4P PLP 301 A 1 HETATM 13 P P PLP . . . B 2 90.464 -2.322 9.399 1 60.96 ? P PLP 301 A 1 HETATM 14 O O1P PLP . . . B 2 91.91 -2.127 8.997 1 50.31 ? O1P PLP 301 A 1 HETATM 15 O O2P PLP . . . B 2 90.08 -3.77 9.184 1 49.35 ? O2P PLP 301 A 1 HETATM 16 O O3P PLP . . . B 2 90.282 -1.981 10.862 1 48.1 ? O3P PLP 301 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 16 #