data_7UBP
#
_model_server_result.job_id            62t9dLkJ1-eSNY1ljJUELg 
_model_server_result.datetime_utc      '2024-10-15 11:24:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ubp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    7UBP 
#
_exptl.entry_id    7UBP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7UBP 
_cell.length_a            124.508 
_cell.length_b            124.508 
_cell.length_c            82.901 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7UBP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PLP doub 260 n y 
N1 C6 PLP sing 261 n y 
C2 C2A PLP sing 262 n n 
C2 C3 PLP sing 263 n y 
C2A H2A1 PLP sing 264 n n 
C2A H2A2 PLP sing 265 n n 
C2A H2A3 PLP sing 266 n n 
C3 O3 PLP sing 267 n n 
C3 C4 PLP doub 268 n y 
O3 HO3 PLP sing 269 n n 
C4 C4A PLP sing 270 n n 
C4 C5 PLP sing 271 n y 
C4A O4A PLP doub 272 n n 
C4A H4A PLP sing 273 n n 
C5 C6 PLP doub 274 n y 
C5 C5A PLP sing 275 n n 
C6 H6 PLP sing 276 n n 
C5A O4P PLP sing 277 n n 
C5A H5A1 PLP sing 278 n n 
C5A H5A2 PLP sing 279 n n 
O4P P PLP sing 280 n n 
P O1P PLP doub 281 n n 
P O2P PLP sing 282 n n 
P O3P PLP sing 283 n n 
O2P HOP2 PLP sing 284 n n 
O3P HOP3 PLP sing 285 n n 
#
_atom_sites.entry_id                     7UBP 
_atom_sites.fract_transf_matrix[1][1]    0.008032 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008032 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012063 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PLP A 1 301 306 PLP PLP . 
C 2 PLP A 1 302 308 PLP PLP . 
D 3 SO4 A 1 303 1 SO4 SO4 . 
E 3 SO4 A 1 304 2 SO4 SO4 . 
F 4 HOH A 1 401 125 HOH HOH . 
F 4 HOH A 2 402 88 HOH HOH . 
F 4 HOH A 3 403 128 HOH HOH . 
F 4 HOH A 4 404 91 HOH HOH . 
F 4 HOH A 5 405 48 HOH HOH . 
F 4 HOH A 6 406 138 HOH HOH . 
F 4 HOH A 7 407 87 HOH HOH . 
F 4 HOH A 8 408 54 HOH HOH . 
F 4 HOH A 9 409 102 HOH HOH . 
F 4 HOH A 10 410 72 HOH HOH . 
F 4 HOH A 11 411 45 HOH HOH . 
F 4 HOH A 12 412 82 HOH HOH . 
F 4 HOH A 13 413 113 HOH HOH . 
F 4 HOH A 14 414 34 HOH HOH . 
F 4 HOH A 15 415 6 HOH HOH . 
F 4 HOH A 16 416 74 HOH HOH . 
F 4 HOH A 17 417 22 HOH HOH . 
F 4 HOH A 18 418 37 HOH HOH . 
F 4 HOH A 19 419 35 HOH HOH . 
F 4 HOH A 20 420 25 HOH HOH . 
F 4 HOH A 21 421 21 HOH HOH . 
F 4 HOH A 22 422 69 HOH HOH . 
F 4 HOH A 23 423 126 HOH HOH . 
F 4 HOH A 24 424 9 HOH HOH . 
F 4 HOH A 25 425 63 HOH HOH . 
F 4 HOH A 26 426 103 HOH HOH . 
F 4 HOH A 27 427 65 HOH HOH . 
F 4 HOH A 28 428 29 HOH HOH . 
F 4 HOH A 29 429 64 HOH HOH . 
F 4 HOH A 30 430 61 HOH HOH . 
F 4 HOH A 31 431 11 HOH HOH . 
F 4 HOH A 32 432 143 HOH HOH . 
F 4 HOH A 33 433 77 HOH HOH . 
F 4 HOH A 34 434 51 HOH HOH . 
F 4 HOH A 35 435 41 HOH HOH . 
F 4 HOH A 36 436 31 HOH HOH . 
F 4 HOH A 37 437 121 HOH HOH . 
F 4 HOH A 38 438 23 HOH HOH . 
F 4 HOH A 39 439 139 HOH HOH . 
F 4 HOH A 40 440 14 HOH HOH . 
F 4 HOH A 41 441 114 HOH HOH . 
F 4 HOH A 42 442 67 HOH HOH . 
F 4 HOH A 43 443 4 HOH HOH . 
F 4 HOH A 44 444 60 HOH HOH . 
F 4 HOH A 45 445 3 HOH HOH . 
F 4 HOH A 46 446 104 HOH HOH . 
F 4 HOH A 47 447 146 HOH HOH . 
F 4 HOH A 48 448 68 HOH HOH . 
F 4 HOH A 49 449 8 HOH HOH . 
F 4 HOH A 50 450 130 HOH HOH . 
F 4 HOH A 51 451 38 HOH HOH . 
F 4 HOH A 52 452 85 HOH HOH . 
F 4 HOH A 53 453 79 HOH HOH . 
F 4 HOH A 54 454 132 HOH HOH . 
F 4 HOH A 55 455 84 HOH HOH . 
F 4 HOH A 56 456 124 HOH HOH . 
F 4 HOH A 57 457 16 HOH HOH . 
F 4 HOH A 58 458 71 HOH HOH . 
F 4 HOH A 59 459 73 HOH HOH . 
F 4 HOH A 60 460 26 HOH HOH . 
F 4 HOH A 61 461 142 HOH HOH . 
F 4 HOH A 62 462 96 HOH HOH . 
F 4 HOH A 63 463 94 HOH HOH . 
F 4 HOH A 64 464 15 HOH HOH . 
F 4 HOH A 65 465 110 HOH HOH . 
F 4 HOH A 66 466 76 HOH HOH . 
F 4 HOH A 67 467 40 HOH HOH . 
F 4 HOH A 68 468 131 HOH HOH . 
F 4 HOH A 69 469 120 HOH HOH . 
F 4 HOH A 70 470 92 HOH HOH . 
F 4 HOH A 71 471 28 HOH HOH . 
F 4 HOH A 72 472 47 HOH HOH . 
F 4 HOH A 73 473 5 HOH HOH . 
F 4 HOH A 74 474 7 HOH HOH . 
F 4 HOH A 75 475 62 HOH HOH . 
F 4 HOH A 76 476 33 HOH HOH . 
F 4 HOH A 77 477 98 HOH HOH . 
F 4 HOH A 78 478 50 HOH HOH . 
F 4 HOH A 79 479 24 HOH HOH . 
F 4 HOH A 80 480 17 HOH HOH . 
F 4 HOH A 81 481 59 HOH HOH . 
F 4 HOH A 82 482 141 HOH HOH . 
F 4 HOH A 83 483 119 HOH HOH . 
F 4 HOH A 84 484 80 HOH HOH . 
F 4 HOH A 85 485 18 HOH HOH . 
F 4 HOH A 86 486 93 HOH HOH . 
F 4 HOH A 87 487 112 HOH HOH . 
F 4 HOH A 88 488 46 HOH HOH . 
F 4 HOH A 89 489 70 HOH HOH . 
F 4 HOH A 90 490 89 HOH HOH . 
F 4 HOH A 91 491 36 HOH HOH . 
F 4 HOH A 92 492 99 HOH HOH . 
F 4 HOH A 93 493 95 HOH HOH . 
F 4 HOH A 94 494 115 HOH HOH . 
F 4 HOH A 95 495 122 HOH HOH . 
F 4 HOH A 96 496 78 HOH HOH . 
F 4 HOH A 97 497 19 HOH HOH . 
F 4 HOH A 98 498 136 HOH HOH . 
F 4 HOH A 99 499 133 HOH HOH . 
F 4 HOH A 100 500 52 HOH HOH . 
F 4 HOH A 101 501 118 HOH HOH . 
F 4 HOH A 102 502 129 HOH HOH . 
F 4 HOH A 103 503 58 HOH HOH . 
F 4 HOH A 104 504 27 HOH HOH . 
F 4 HOH A 105 505 134 HOH HOH . 
F 4 HOH A 106 506 10 HOH HOH . 
F 4 HOH A 107 507 140 HOH HOH . 
F 4 HOH A 108 508 66 HOH HOH . 
F 4 HOH A 109 509 30 HOH HOH . 
F 4 HOH A 110 510 20 HOH HOH . 
F 4 HOH A 111 511 127 HOH HOH . 
F 4 HOH A 112 512 97 HOH HOH . 
F 4 HOH A 113 513 111 HOH HOH . 
F 4 HOH A 114 514 49 HOH HOH . 
F 4 HOH A 115 515 106 HOH HOH . 
F 4 HOH A 116 516 101 HOH HOH . 
F 4 HOH A 117 517 32 HOH HOH . 
F 4 HOH A 118 518 90 HOH HOH . 
F 4 HOH A 119 519 109 HOH HOH . 
F 4 HOH A 120 520 13 HOH HOH . 
F 4 HOH A 121 521 137 HOH HOH . 
F 4 HOH A 122 522 57 HOH HOH . 
F 4 HOH A 123 523 42 HOH HOH . 
F 4 HOH A 124 524 105 HOH HOH . 
F 4 HOH A 125 525 144 HOH HOH . 
F 4 HOH A 126 526 81 HOH HOH . 
F 4 HOH A 127 527 100 HOH HOH . 
F 4 HOH A 128 528 123 HOH HOH . 
F 4 HOH A 129 529 117 HOH HOH . 
F 4 HOH A 130 530 145 HOH HOH . 
F 4 HOH A 131 531 108 HOH HOH . 
F 4 HOH A 132 532 55 HOH HOH . 
F 4 HOH A 133 533 44 HOH HOH . 
F 4 HOH A 134 534 53 HOH HOH . 
F 4 HOH A 135 535 56 HOH HOH . 
F 4 HOH A 136 536 116 HOH HOH . 
F 4 HOH A 137 537 135 HOH HOH . 
F 4 HOH A 138 538 83 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . B 2 87.534 1.409 6.592 1 48.4 ? N1 PLP 301 A 1 
HETATM 2 C C2 PLP . . . B 2 87.23 1.227 5.256 1 52.16 ? C2 PLP 301 A 1 
HETATM 3 C C2A PLP . . . B 2 86.618 2.328 4.438 1 49.71 ? C2A PLP 301 A 1 
HETATM 4 C C3 PLP . . . B 2 87.486 0.005 4.644 1 59.6 ? C3 PLP 301 A 1 
HETATM 5 O O3 PLP . . . B 2 87.165 -0.132 3.316 1 50.7 ? O3 PLP 301 A 1 
HETATM 6 C C4 PLP . . . B 2 88.031 -1.066 5.363 1 56.79 ? C4 PLP 301 A 1 
HETATM 7 C C4A PLP . . . B 2 87.62 -2.448 4.909 1 62.23 ? C4A PLP 301 A 1 
HETATM 8 O O4A PLP . . . B 2 88.372 -3.174 4.255 1 65.53 ? O4A PLP 301 A 1 
HETATM 9 C C5 PLP . . . B 2 88.353 -0.869 6.712 1 48.2 ? C5 PLP 301 A 1 
HETATM 10 C C6 PLP . . . B 2 88.086 0.36 7.313 1 51.95 ? C6 PLP 301 A 1 
HETATM 11 C C5A PLP . . . B 2 88.962 -1.992 7.531 1 58.08 ? C5A PLP 301 A 1 
HETATM 12 O O4P PLP . . . B 2 89.766 -1.531 8.612 1 62.47 ? O4P PLP 301 A 1 
HETATM 13 P P PLP . . . B 2 90.884 -2.506 9.285 1 70.15 ? P PLP 301 A 1 
HETATM 14 O O1P PLP . . . B 2 92.219 -2.126 8.691 1 60.85 ? O1P PLP 301 A 1 
HETATM 15 O O2P PLP . . . B 2 90.528 -3.933 8.921 1 53.73 ? O2P PLP 301 A 1 
HETATM 16 O O3P PLP . . . B 2 90.978 -2.393 10.797 1 43.36 ? O3P PLP 301 A 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           16 
#