data_7UBQ # _model_server_result.job_id 3YPeoT6ueMpYEtt44vkj9g _model_server_result.datetime_utc '2024-11-08 09:59:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ubq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7UBQ # _exptl.entry_id 7UBQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 249.158 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXINE-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7UBQ _cell.length_a 128.363 _cell.length_b 128.363 _cell.length_c 42.446 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UBQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H12 N O6 P' _chem_comp.formula_weight 249.158 _chem_comp.id PXP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXINE-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PXP doub 277 n y N1 C6 PXP sing 278 n y C2 C2A PXP sing 279 n n C2 C3 PXP sing 280 n y C2A H2A1 PXP sing 281 n n C2A H2A2 PXP sing 282 n n C2A H2A3 PXP sing 283 n n C3 O3 PXP sing 284 n n C3 C4 PXP doub 285 n y O3 HO3 PXP sing 286 n n C4 C4A PXP sing 287 n n C4 C5 PXP sing 288 n y C4A O4A PXP sing 289 n n C4A H4A1 PXP sing 290 n n C4A H4A2 PXP sing 291 n n O4A HOA4 PXP sing 292 n n C5 C6 PXP doub 293 n y C5 C5A PXP sing 294 n n C6 H6 PXP sing 295 n n C5A O4P PXP sing 296 n n C5A H5A1 PXP sing 297 n n C5A H5A2 PXP sing 298 n n O4P P PXP sing 299 n n P O1P PXP doub 300 n n P O2P PXP sing 301 n n P O3P PXP sing 302 n n O2P HOP2 PXP sing 303 n n O3P HOP3 PXP sing 304 n n # _atom_sites.entry_id 7UBQ _atom_sites.fract_transf_matrix[1][1] 0.00779 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00779 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02356 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PXP A 1 301 248 PXP PXP . C 3 HOH A 1 401 46 HOH HOH . C 3 HOH A 2 402 12 HOH HOH . C 3 HOH A 3 403 32 HOH HOH . C 3 HOH A 4 404 5 HOH HOH . C 3 HOH A 5 405 94 HOH HOH . C 3 HOH A 6 406 66 HOH HOH . C 3 HOH A 7 407 63 HOH HOH . C 3 HOH A 8 408 79 HOH HOH . C 3 HOH A 9 409 21 HOH HOH . C 3 HOH A 10 410 54 HOH HOH . C 3 HOH A 11 411 53 HOH HOH . C 3 HOH A 12 412 45 HOH HOH . C 3 HOH A 13 413 48 HOH HOH . C 3 HOH A 14 414 3 HOH HOH . C 3 HOH A 15 415 2 HOH HOH . C 3 HOH A 16 416 33 HOH HOH . C 3 HOH A 17 417 74 HOH HOH . C 3 HOH A 18 418 40 HOH HOH . C 3 HOH A 19 419 67 HOH HOH . C 3 HOH A 20 420 104 HOH HOH . C 3 HOH A 21 421 47 HOH HOH . C 3 HOH A 22 422 39 HOH HOH . C 3 HOH A 23 423 75 HOH HOH . C 3 HOH A 24 424 28 HOH HOH . C 3 HOH A 25 425 49 HOH HOH . C 3 HOH A 26 426 30 HOH HOH . C 3 HOH A 27 427 10 HOH HOH . C 3 HOH A 28 428 18 HOH HOH . C 3 HOH A 29 429 1 HOH HOH . C 3 HOH A 30 430 17 HOH HOH . C 3 HOH A 31 431 11 HOH HOH . C 3 HOH A 32 432 19 HOH HOH . C 3 HOH A 33 433 7 HOH HOH . C 3 HOH A 34 434 9 HOH HOH . C 3 HOH A 35 435 71 HOH HOH . C 3 HOH A 36 436 55 HOH HOH . C 3 HOH A 37 437 88 HOH HOH . C 3 HOH A 38 438 6 HOH HOH . C 3 HOH A 39 439 97 HOH HOH . C 3 HOH A 40 440 4 HOH HOH . C 3 HOH A 41 441 15 HOH HOH . C 3 HOH A 42 442 36 HOH HOH . C 3 HOH A 43 443 56 HOH HOH . C 3 HOH A 44 444 85 HOH HOH . C 3 HOH A 45 445 13 HOH HOH . C 3 HOH A 46 446 26 HOH HOH . C 3 HOH A 47 447 105 HOH HOH . C 3 HOH A 48 448 60 HOH HOH . C 3 HOH A 49 449 69 HOH HOH . C 3 HOH A 50 450 61 HOH HOH . C 3 HOH A 51 451 22 HOH HOH . C 3 HOH A 52 452 16 HOH HOH . C 3 HOH A 53 453 35 HOH HOH . C 3 HOH A 54 454 38 HOH HOH . C 3 HOH A 55 455 8 HOH HOH . C 3 HOH A 56 456 62 HOH HOH . C 3 HOH A 57 457 51 HOH HOH . C 3 HOH A 58 458 14 HOH HOH . C 3 HOH A 59 459 34 HOH HOH . C 3 HOH A 60 460 87 HOH HOH . C 3 HOH A 61 461 42 HOH HOH . C 3 HOH A 62 462 80 HOH HOH . C 3 HOH A 63 463 50 HOH HOH . C 3 HOH A 64 464 52 HOH HOH . C 3 HOH A 65 465 27 HOH HOH . C 3 HOH A 66 466 93 HOH HOH . C 3 HOH A 67 467 76 HOH HOH . C 3 HOH A 68 468 43 HOH HOH . C 3 HOH A 69 469 96 HOH HOH . C 3 HOH A 70 470 83 HOH HOH . C 3 HOH A 71 471 102 HOH HOH . C 3 HOH A 72 472 84 HOH HOH . C 3 HOH A 73 473 86 HOH HOH . C 3 HOH A 74 474 98 HOH HOH . C 3 HOH A 75 475 29 HOH HOH . C 3 HOH A 76 476 81 HOH HOH . C 3 HOH A 77 477 25 HOH HOH . C 3 HOH A 78 478 90 HOH HOH . C 3 HOH A 79 479 77 HOH HOH . C 3 HOH A 80 480 20 HOH HOH . C 3 HOH A 81 481 58 HOH HOH . C 3 HOH A 82 482 41 HOH HOH . C 3 HOH A 83 483 91 HOH HOH . C 3 HOH A 84 484 100 HOH HOH . C 3 HOH A 85 485 24 HOH HOH . C 3 HOH A 86 486 82 HOH HOH . C 3 HOH A 87 487 70 HOH HOH . C 3 HOH A 88 488 57 HOH HOH . C 3 HOH A 89 489 23 HOH HOH . C 3 HOH A 90 490 95 HOH HOH . C 3 HOH A 91 491 99 HOH HOH . C 3 HOH A 92 492 64 HOH HOH . C 3 HOH A 93 493 103 HOH HOH . C 3 HOH A 94 494 92 HOH HOH . C 3 HOH A 95 495 68 HOH HOH . C 3 HOH A 96 496 44 HOH HOH . C 3 HOH A 97 497 65 HOH HOH . C 3 HOH A 98 498 72 HOH HOH . C 3 HOH A 99 499 101 HOH HOH . C 3 HOH A 100 500 37 HOH HOH . C 3 HOH A 101 501 78 HOH HOH . C 3 HOH A 102 502 59 HOH HOH . C 3 HOH A 103 503 89 HOH HOH . C 3 HOH A 104 504 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PXP . . . B 2 10.59 91.855 50.36 1 19.89 ? N1 PXP 301 A 1 HETATM 2 C C2 PXP . . . B 2 10.725 92.228 49.041 1 24.94 ? C2 PXP 301 A 1 HETATM 3 C C2A PXP . . . B 2 11.215 91.221 48.031 1 16.27 ? C2A PXP 301 A 1 HETATM 4 C C3 PXP . . . B 2 10.418 93.519 48.672 1 35.73 ? C3 PXP 301 A 1 HETATM 5 O O3 PXP . . . B 2 10.541 93.953 47.291 1 34.36 ? O3 PXP 301 A 1 HETATM 6 C C4 PXP . . . B 2 9.979 94.423 49.62 1 38.64 ? C4 PXP 301 A 1 HETATM 7 C C4A PXP . . . B 2 9.648 95.858 49.134 1 35.25 ? C4A PXP 301 A 1 HETATM 8 O O4A PXP . . . B 2 9.883 95.925 47.723 1 40.08 ? O4A PXP 301 A 1 HETATM 9 C C5 PXP . . . B 2 9.842 94.034 50.935 1 31.06 ? C5 PXP 301 A 1 HETATM 10 C C6 PXP . . . B 2 10.167 92.734 51.29 1 21.33 ? C6 PXP 301 A 1 HETATM 11 C C5A PXP . . . B 2 9.379 94.974 52.044 1 28.94 ? C5A PXP 301 A 1 HETATM 12 O O4P PXP . . . B 2 8.096 95.527 51.865 1 33.78 ? O4P PXP 301 A 1 HETATM 13 P P PXP . . . B 2 7.569 96.557 52.973 1 35.32 ? P PXP 301 A 1 HETATM 14 O O1P PXP . . . B 2 8.241 97.864 52.767 1 33.23 ? O1P PXP 301 A 1 HETATM 15 O O2P PXP . . . B 2 7.894 96.05 54.35 1 29.21 ? O2P PXP 301 A 1 HETATM 16 O O3P PXP . . . B 2 6.051 96.744 52.835 1 35.85 ? O3P PXP 301 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 16 #