data_7UE8 # _model_server_result.job_id ANVPcMBJDLCWfpl5wmdPuQ _model_server_result.datetime_utc '2024-11-22 09:49:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ue8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 7UE8 # _exptl.entry_id 7UE8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7UE8 _cell.length_a 98.571 _cell.length_b 98.571 _cell.length_c 68.941 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UE8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -22.980333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O3G ANP . A ANP 501 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc2 B O1B ANP . A ANP 501 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc3 C MG MG . A MG 502 1_555 G O HOH . A HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc4 C MG MG . A MG 502 1_555 G O HOH . A HOH 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc5 C MG MG . A MG 502 1_555 G O HOH . A HOH 628 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc6 C MG MG . A MG 502 1_555 G O HOH . A HOH 629 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 19 n n PG O2G ANP sing 20 n n PG O3G ANP sing 21 n n PG N3B ANP sing 22 n n O2G HOG2 ANP sing 23 n n O3G HOG3 ANP sing 24 n n PB O1B ANP doub 25 n n PB O2B ANP sing 26 n n PB N3B ANP sing 27 n n PB O3A ANP sing 28 n n O2B HOB2 ANP sing 29 n n N3B HNB1 ANP sing 30 n n PA O1A ANP doub 31 n n PA O2A ANP sing 32 n n PA O3A ANP sing 33 n n PA O5' ANP sing 34 n n O2A HOA2 ANP sing 35 n n O5' C5' ANP sing 36 n n C5' C4' ANP sing 37 n n C5' "H5'1" ANP sing 38 n n C5' "H5'2" ANP sing 39 n n C4' O4' ANP sing 40 n n C4' C3' ANP sing 41 n n C4' H4' ANP sing 42 n n O4' C1' ANP sing 43 n n C3' O3' ANP sing 44 n n C3' C2' ANP sing 45 n n C3' H3' ANP sing 46 n n O3' HO3' ANP sing 47 n n C2' O2' ANP sing 48 n n C2' C1' ANP sing 49 n n C2' H2' ANP sing 50 n n O2' HO2' ANP sing 51 n n C1' N9 ANP sing 52 n n C1' H1' ANP sing 53 n n N9 C8 ANP sing 54 n y N9 C4 ANP sing 55 n y C8 N7 ANP doub 56 n y C8 H8 ANP sing 57 n n N7 C5 ANP sing 58 n y C5 C6 ANP sing 59 n y C5 C4 ANP doub 60 n y C6 N6 ANP sing 61 n n C6 N1 ANP doub 62 n y N6 HN61 ANP sing 63 n n N6 HN62 ANP sing 64 n n N1 C2 ANP sing 65 n y C2 N3 ANP doub 66 n y C2 H2 ANP sing 67 n n N3 C4 ANP sing 68 n y # _atom_sites.entry_id 7UE8 _atom_sites.fract_transf_matrix[1][1] 0.010145 _atom_sites.fract_transf_matrix[1][2] 0.005857 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011714 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014505 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 501 501 ANP ANP . C 3 MG A 1 502 1 MG MG . D 4 Y92 A 1 503 1 Y92 Y92 . E 5 ACT A 1 504 1 ACT ACT . F 6 EDO A 1 505 1 EDO EDO . G 7 HOH A 1 601 29 HOH HOH . G 7 HOH A 2 602 37 HOH HOH . G 7 HOH A 3 603 9 HOH HOH . G 7 HOH A 4 604 6 HOH HOH . G 7 HOH A 5 605 30 HOH HOH . G 7 HOH A 6 606 12 HOH HOH . G 7 HOH A 7 607 87 HOH HOH . G 7 HOH A 8 608 3 HOH HOH . G 7 HOH A 9 609 84 HOH HOH . G 7 HOH A 10 610 42 HOH HOH . G 7 HOH A 11 611 36 HOH HOH . G 7 HOH A 12 612 4 HOH HOH . G 7 HOH A 13 613 16 HOH HOH . G 7 HOH A 14 614 88 HOH HOH . G 7 HOH A 15 615 39 HOH HOH . G 7 HOH A 16 616 1 HOH HOH . G 7 HOH A 17 617 8 HOH HOH . G 7 HOH A 18 618 7 HOH HOH . G 7 HOH A 19 619 47 HOH HOH . G 7 HOH A 20 620 21 HOH HOH . G 7 HOH A 21 621 80 HOH HOH . G 7 HOH A 22 622 17 HOH HOH . G 7 HOH A 23 623 23 HOH HOH . G 7 HOH A 24 624 26 HOH HOH . G 7 HOH A 25 625 96 HOH HOH . G 7 HOH A 26 626 13 HOH HOH . G 7 HOH A 27 627 32 HOH HOH . G 7 HOH A 28 628 2 HOH HOH . G 7 HOH A 29 629 5 HOH HOH . G 7 HOH A 30 630 18 HOH HOH . G 7 HOH A 31 631 33 HOH HOH . G 7 HOH A 32 632 82 HOH HOH . G 7 HOH A 33 633 94 HOH HOH . G 7 HOH A 34 634 19 HOH HOH . G 7 HOH A 35 635 61 HOH HOH . G 7 HOH A 36 636 40 HOH HOH . G 7 HOH A 37 637 71 HOH HOH . G 7 HOH A 38 638 28 HOH HOH . G 7 HOH A 39 639 79 HOH HOH . G 7 HOH A 40 640 45 HOH HOH . G 7 HOH A 41 641 62 HOH HOH . G 7 HOH A 42 642 11 HOH HOH . G 7 HOH A 43 643 31 HOH HOH . G 7 HOH A 44 644 35 HOH HOH . G 7 HOH A 45 645 69 HOH HOH . G 7 HOH A 46 646 70 HOH HOH . G 7 HOH A 47 647 92 HOH HOH . G 7 HOH A 48 648 48 HOH HOH . G 7 HOH A 49 649 44 HOH HOH . G 7 HOH A 50 650 22 HOH HOH . G 7 HOH A 51 651 20 HOH HOH . G 7 HOH A 52 652 97 HOH HOH . G 7 HOH A 53 653 24 HOH HOH . G 7 HOH A 54 654 75 HOH HOH . G 7 HOH A 55 655 93 HOH HOH . G 7 HOH A 56 656 51 HOH HOH . G 7 HOH A 57 657 85 HOH HOH . G 7 HOH A 58 658 66 HOH HOH . G 7 HOH A 59 659 98 HOH HOH . G 7 HOH A 60 660 63 HOH HOH . G 7 HOH A 61 661 10 HOH HOH . G 7 HOH A 62 662 55 HOH HOH . G 7 HOH A 63 663 49 HOH HOH . G 7 HOH A 64 664 53 HOH HOH . G 7 HOH A 65 665 25 HOH HOH . G 7 HOH A 66 666 104 HOH HOH . G 7 HOH A 67 667 41 HOH HOH . G 7 HOH A 68 668 65 HOH HOH . G 7 HOH A 69 669 86 HOH HOH . G 7 HOH A 70 670 100 HOH HOH . G 7 HOH A 71 671 83 HOH HOH . G 7 HOH A 72 672 95 HOH HOH . G 7 HOH A 73 673 60 HOH HOH . G 7 HOH A 74 674 81 HOH HOH . G 7 HOH A 75 675 50 HOH HOH . G 7 HOH A 76 676 74 HOH HOH . G 7 HOH A 77 677 76 HOH HOH . G 7 HOH A 78 678 57 HOH HOH . G 7 HOH A 79 679 99 HOH HOH . G 7 HOH A 80 680 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 -28.583 -14.278 -1.751 1 41.82 ? PG ANP 501 A 1 HETATM 2 O O1G ANP . . . B 2 -28.809 -13.404 -2.976 1 44.75 ? O1G ANP 501 A 1 HETATM 3 O O2G ANP . . . B 2 -28.321 -15.74 -2.271 1 38.82 ? O2G ANP 501 A 1 HETATM 4 O O3G ANP . . . B 2 -29.887 -14.254 -0.867 1 47.91 ? O3G ANP 501 A 1 HETATM 5 P PB ANP . . . B 2 -27.024 -13.691 0.654 1 30.32 ? PB ANP 501 A 1 HETATM 6 O O1B ANP . . . B 2 -28.141 -14.463 1.291 1 31.3 ? O1B ANP 501 A 1 HETATM 7 O O2B ANP . . . B 2 -25.68 -14.303 1.054 1 29.28 ? O2B ANP 501 A 1 HETATM 8 N N3B ANP . . . B 2 -27.186 -13.686 -1.007 1 35.23 ? N3B ANP 501 A 1 HETATM 9 P PA ANP . . . B 2 -27.118 -11.506 2.484 1 29.99 ? PA ANP 501 A 1 HETATM 10 O O1A ANP . . . B 2 -26.464 -12.329 3.555 1 36.22 ? O1A ANP 501 A 1 HETATM 11 O O2A ANP . . . B 2 -28.552 -11.094 2.824 1 33.88 ? O2A ANP 501 A 1 HETATM 12 O O3A ANP . . . B 2 -27.055 -12.187 1.048 1 29.39 ? O3A ANP 501 A 1 HETATM 13 O O5' ANP . . . B 2 -26.284 -10.187 2.249 1 28.05 ? O5' ANP 501 A 1 HETATM 14 C C5' ANP . . . B 2 -25.005 -10.247 1.594 1 27.96 ? C5' ANP 501 A 1 HETATM 15 C C4' ANP . . . B 2 -24.493 -8.839 1.417 1 30.79 ? C4' ANP 501 A 1 HETATM 16 O O4' ANP . . . B 2 -24.321 -8.231 2.709 1 34.35 ? O4' ANP 501 A 1 HETATM 17 C C3' ANP . . . B 2 -23.14 -8.708 0.721 1 29.48 ? C3' ANP 501 A 1 HETATM 18 O O3' ANP . . . B 2 -23.344 -8.585 -0.681 1 32.37 ? O3' ANP 501 A 1 HETATM 19 C C2' ANP . . . B 2 -22.572 -7.413 1.308 1 32.55 ? C2' ANP 501 A 1 HETATM 20 O O2' ANP . . . B 2 -22.977 -6.235 0.627 1 32.48 ? O2' ANP 501 A 1 HETATM 21 C C1' ANP . . . B 2 -23.192 -7.377 2.711 1 30.42 ? C1' ANP 501 A 1 HETATM 22 N N9 ANP . . . B 2 -22.323 -7.803 3.794 1 30.66 ? N9 ANP 501 A 1 HETATM 23 C C8 ANP . . . B 2 -22.487 -7.44 5.106 1 28.74 ? C8 ANP 501 A 1 HETATM 24 N N7 ANP . . . B 2 -21.614 -7.972 5.923 1 38.43 ? N7 ANP 501 A 1 HETATM 25 C C5 ANP . . . B 2 -20.818 -8.749 5.098 1 32.4 ? C5 ANP 501 A 1 HETATM 26 C C6 ANP . . . B 2 -19.715 -9.58 5.358 1 34.09 ? C6 ANP 501 A 1 HETATM 27 N N6 ANP . . . B 2 -19.19 -9.753 6.575 1 38.63 ? N6 ANP 501 A 1 HETATM 28 N N1 ANP . . . B 2 -19.154 -10.226 4.309 1 34.29 ? N1 ANP 501 A 1 HETATM 29 C C2 ANP . . . B 2 -19.678 -10.052 3.093 1 39.08 ? C2 ANP 501 A 1 HETATM 30 N N3 ANP . . . B 2 -20.721 -9.299 2.732 1 33.27 ? N3 ANP 501 A 1 HETATM 31 C C4 ANP . . . B 2 -21.25 -8.664 3.784 1 29.13 ? C4 ANP 501 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #