data_7UEQ # _model_server_result.job_id c_oLgkRFKTLA3Da4ZETP7Q _model_server_result.datetime_utc '2024-10-19 10:28:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ueq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 7UEQ # _exptl.entry_id 7UEQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7UEQ _cell.length_a 97.827 _cell.length_b 97.827 _cell.length_c 68.927 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UEQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -45.951333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O3G ANP . A ANP 501 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc2 B O1B ANP . A ANP 501 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc3 C MG MG . A MG 502 1_555 E O HOH . A HOH 625 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc4 C MG MG . A MG 502 1_555 E O HOH . A HOH 644 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc5 C MG MG . A MG 502 1_555 E O HOH . A HOH 658 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc6 C MG MG . A MG 502 1_555 E O HOH . A HOH 662 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 7UEQ _atom_sites.fract_transf_matrix[1][1] 0.010222 _atom_sites.fract_transf_matrix[1][2] 0.005902 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011803 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014508 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 501 501 ANP ANP . C 3 MG A 1 502 1 MG MG . D 4 N06 A 1 503 1 N06 LIG . E 5 HOH A 1 601 83 HOH HOH . E 5 HOH A 2 602 158 HOH HOH . E 5 HOH A 3 603 130 HOH HOH . E 5 HOH A 4 604 156 HOH HOH . E 5 HOH A 5 605 60 HOH HOH . E 5 HOH A 6 606 171 HOH HOH . E 5 HOH A 7 607 151 HOH HOH . E 5 HOH A 8 608 16 HOH HOH . E 5 HOH A 9 609 97 HOH HOH . E 5 HOH A 10 610 95 HOH HOH . E 5 HOH A 11 611 146 HOH HOH . E 5 HOH A 12 612 120 HOH HOH . E 5 HOH A 13 613 92 HOH HOH . E 5 HOH A 14 614 119 HOH HOH . E 5 HOH A 15 615 75 HOH HOH . E 5 HOH A 16 616 126 HOH HOH . E 5 HOH A 17 617 36 HOH HOH . E 5 HOH A 18 618 12 HOH HOH . E 5 HOH A 19 619 84 HOH HOH . E 5 HOH A 20 620 66 HOH HOH . E 5 HOH A 21 621 52 HOH HOH . E 5 HOH A 22 622 77 HOH HOH . E 5 HOH A 23 623 47 HOH HOH . E 5 HOH A 24 624 58 HOH HOH . E 5 HOH A 25 625 3 HOH HOH . E 5 HOH A 26 626 106 HOH HOH . E 5 HOH A 27 627 162 HOH HOH . E 5 HOH A 28 628 145 HOH HOH . E 5 HOH A 29 629 11 HOH HOH . E 5 HOH A 30 630 78 HOH HOH . E 5 HOH A 31 631 161 HOH HOH . E 5 HOH A 32 632 49 HOH HOH . E 5 HOH A 33 633 33 HOH HOH . E 5 HOH A 34 634 37 HOH HOH . E 5 HOH A 35 635 41 HOH HOH . E 5 HOH A 36 636 71 HOH HOH . E 5 HOH A 37 637 134 HOH HOH . E 5 HOH A 38 638 17 HOH HOH . E 5 HOH A 39 639 127 HOH HOH . E 5 HOH A 40 640 21 HOH HOH . E 5 HOH A 41 641 104 HOH HOH . E 5 HOH A 42 642 8 HOH HOH . E 5 HOH A 43 643 25 HOH HOH . E 5 HOH A 44 644 2 HOH HOH . E 5 HOH A 45 645 45 HOH HOH . E 5 HOH A 46 646 62 HOH HOH . E 5 HOH A 47 647 140 HOH HOH . E 5 HOH A 48 648 9 HOH HOH . E 5 HOH A 49 649 133 HOH HOH . E 5 HOH A 50 650 64 HOH HOH . E 5 HOH A 51 651 46 HOH HOH . E 5 HOH A 52 652 81 HOH HOH . E 5 HOH A 53 653 63 HOH HOH . E 5 HOH A 54 654 98 HOH HOH . E 5 HOH A 55 655 39 HOH HOH . E 5 HOH A 56 656 68 HOH HOH . E 5 HOH A 57 657 30 HOH HOH . E 5 HOH A 58 658 5 HOH HOH . E 5 HOH A 59 659 61 HOH HOH . E 5 HOH A 60 660 163 HOH HOH . E 5 HOH A 61 661 43 HOH HOH . E 5 HOH A 62 662 4 HOH HOH . E 5 HOH A 63 663 166 HOH HOH . E 5 HOH A 64 664 34 HOH HOH . E 5 HOH A 65 665 53 HOH HOH . E 5 HOH A 66 666 143 HOH HOH . E 5 HOH A 67 667 90 HOH HOH . E 5 HOH A 68 668 20 HOH HOH . E 5 HOH A 69 669 6 HOH HOH . E 5 HOH A 70 670 103 HOH HOH . E 5 HOH A 71 671 56 HOH HOH . E 5 HOH A 72 672 138 HOH HOH . E 5 HOH A 73 673 142 HOH HOH . E 5 HOH A 74 674 135 HOH HOH . E 5 HOH A 75 675 123 HOH HOH . E 5 HOH A 76 676 1 HOH HOH . E 5 HOH A 77 677 26 HOH HOH . E 5 HOH A 78 678 107 HOH HOH . E 5 HOH A 79 679 113 HOH HOH . E 5 HOH A 80 680 22 HOH HOH . E 5 HOH A 81 681 159 HOH HOH . E 5 HOH A 82 682 55 HOH HOH . E 5 HOH A 83 683 15 HOH HOH . E 5 HOH A 84 684 59 HOH HOH . E 5 HOH A 85 685 105 HOH HOH . E 5 HOH A 86 686 170 HOH HOH . E 5 HOH A 87 687 54 HOH HOH . E 5 HOH A 88 688 168 HOH HOH . E 5 HOH A 89 689 112 HOH HOH . E 5 HOH A 90 690 157 HOH HOH . E 5 HOH A 91 691 18 HOH HOH . E 5 HOH A 92 692 132 HOH HOH . E 5 HOH A 93 693 86 HOH HOH . E 5 HOH A 94 694 10 HOH HOH . E 5 HOH A 95 695 57 HOH HOH . E 5 HOH A 96 696 42 HOH HOH . E 5 HOH A 97 697 93 HOH HOH . E 5 HOH A 98 698 23 HOH HOH . E 5 HOH A 99 699 31 HOH HOH . E 5 HOH A 100 700 128 HOH HOH . E 5 HOH A 101 701 40 HOH HOH . E 5 HOH A 102 702 35 HOH HOH . E 5 HOH A 103 703 32 HOH HOH . E 5 HOH A 104 704 160 HOH HOH . E 5 HOH A 105 705 114 HOH HOH . E 5 HOH A 106 706 85 HOH HOH . E 5 HOH A 107 707 91 HOH HOH . E 5 HOH A 108 708 121 HOH HOH . E 5 HOH A 109 709 38 HOH HOH . E 5 HOH A 110 710 69 HOH HOH . E 5 HOH A 111 711 101 HOH HOH . E 5 HOH A 112 712 167 HOH HOH . E 5 HOH A 113 713 7 HOH HOH . E 5 HOH A 114 714 72 HOH HOH . E 5 HOH A 115 715 44 HOH HOH . E 5 HOH A 116 716 100 HOH HOH . E 5 HOH A 117 717 67 HOH HOH . E 5 HOH A 118 718 13 HOH HOH . E 5 HOH A 119 719 148 HOH HOH . E 5 HOH A 120 720 150 HOH HOH . E 5 HOH A 121 721 153 HOH HOH . E 5 HOH A 122 722 65 HOH HOH . E 5 HOH A 123 723 29 HOH HOH . E 5 HOH A 124 724 14 HOH HOH . E 5 HOH A 125 725 147 HOH HOH . E 5 HOH A 126 726 144 HOH HOH . E 5 HOH A 127 727 149 HOH HOH . E 5 HOH A 128 728 136 HOH HOH . E 5 HOH A 129 729 122 HOH HOH . E 5 HOH A 130 730 155 HOH HOH . E 5 HOH A 131 731 50 HOH HOH . E 5 HOH A 132 732 27 HOH HOH . E 5 HOH A 133 733 139 HOH HOH . E 5 HOH A 134 734 110 HOH HOH . E 5 HOH A 135 735 19 HOH HOH . E 5 HOH A 136 736 137 HOH HOH . E 5 HOH A 137 737 87 HOH HOH . E 5 HOH A 138 738 124 HOH HOH . E 5 HOH A 139 739 109 HOH HOH . E 5 HOH A 140 740 51 HOH HOH . E 5 HOH A 141 741 169 HOH HOH . E 5 HOH A 142 742 152 HOH HOH . E 5 HOH A 143 743 96 HOH HOH . E 5 HOH A 144 744 165 HOH HOH . E 5 HOH A 145 745 129 HOH HOH . E 5 HOH A 146 746 111 HOH HOH . E 5 HOH A 147 747 141 HOH HOH . E 5 HOH A 148 748 79 HOH HOH . E 5 HOH A 149 749 125 HOH HOH . E 5 HOH A 150 750 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 -26.453 17.615 -13.293 1 24.67 ? PG ANP 501 A 1 HETATM 2 O O1G ANP . . . B 2 -25.701 18.169 -14.437 1 28.36 ? O1G ANP 501 A 1 HETATM 3 O O2G ANP . . . B 2 -27.55 16.675 -13.828 1 24.23 ? O2G ANP 501 A 1 HETATM 4 O O3G ANP . . . B 2 -27.14 18.742 -12.464 1 25.5 ? O3G ANP 501 A 1 HETATM 5 P PB ANP . . . B 2 -25.338 16.474 -10.845 1 20.3 ? PB ANP 501 A 1 HETATM 6 O O1B ANP . . . B 2 -26.465 17.138 -10.161 1 22.22 ? O1B ANP 501 A 1 HETATM 7 O O2B ANP . . . B 2 -25.125 15.013 -10.442 1 19.75 ? O2B ANP 501 A 1 HETATM 8 N N3B ANP . . . B 2 -25.328 16.678 -12.45 1 19.65 ? N3B ANP 501 A 1 HETATM 9 P PA ANP . . . B 2 -23.427 17.744 -9.008 1 19.27 ? PA ANP 501 A 1 HETATM 10 O O1A ANP . . . B 2 -23.82 16.737 -7.933 1 20.75 -1 O1A ANP 501 A 1 HETATM 11 O O2A ANP . . . B 2 -23.765 19.187 -8.68 1 18.89 ? O2A ANP 501 A 1 HETATM 12 O O3A ANP . . . B 2 -24.077 17.327 -10.411 1 18 ? O3A ANP 501 A 1 HETATM 13 O O5' ANP . . . B 2 -21.872 17.705 -9.354 1 18.45 ? O5' ANP 501 A 1 HETATM 14 C C5' ANP . . . B 2 -21.292 16.595 -10.032 1 20.38 ? C5' ANP 501 A 1 HETATM 15 C C4' ANP . . . B 2 -19.79 16.854 -10.127 1 21.57 ? C4' ANP 501 A 1 HETATM 16 O O4' ANP . . . B 2 -19.225 16.928 -8.81 1 20.94 ? O4' ANP 501 A 1 HETATM 17 C C3' ANP . . . B 2 -19.072 15.704 -10.836 1 19.17 ? C3' ANP 501 A 1 HETATM 18 O O3' ANP . . . B 2 -19.056 15.989 -12.239 1 20.99 ? O3' ANP 501 A 1 HETATM 19 C C2' ANP . . . B 2 -17.644 15.845 -10.258 1 22.67 ? C2' ANP 501 A 1 HETATM 20 O O2' ANP . . . B 2 -16.879 16.839 -10.953 1 20.92 ? O2' ANP 501 A 1 HETATM 21 C C1' ANP . . . B 2 -17.901 16.419 -8.832 1 18.48 ? C1' ANP 501 A 1 HETATM 22 N N9 ANP . . . B 2 -17.832 15.461 -7.737 1 20.94 ? N9 ANP 501 A 1 HETATM 23 C C8 ANP . . . B 2 -17.575 15.806 -6.447 1 21.27 ? C8 ANP 501 A 1 HETATM 24 N N7 ANP . . . B 2 -17.625 14.723 -5.669 1 23.63 ? N7 ANP 501 A 1 HETATM 25 C C5 ANP . . . B 2 -17.934 13.658 -6.448 1 23.35 ? C5 ANP 501 A 1 HETATM 26 C C6 ANP . . . B 2 -18.109 12.287 -6.192 1 26.87 ? C6 ANP 501 A 1 HETATM 27 N N6 ANP . . . B 2 -17.976 11.786 -4.905 1 33.96 ? N6 ANP 501 A 1 HETATM 28 N N1 ANP . . . B 2 -18.414 11.478 -7.212 1 24.86 ? N1 ANP 501 A 1 HETATM 29 C C2 ANP . . . B 2 -18.534 11.99 -8.421 1 24.81 ? C2 ANP 501 A 1 HETATM 30 N N3 ANP . . . B 2 -18.38 13.257 -8.742 1 24.34 ? N3 ANP 501 A 1 HETATM 31 C C4 ANP . . . B 2 -18.071 14.114 -7.776 1 20 ? C4 ANP 501 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #