data_7UER # _model_server_result.job_id 7b8bDgxrxOiAo0CvHmxLsw _model_server_result.datetime_utc '2024-10-12 06:16:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7uer # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 7UER # _exptl.entry_id 7UER _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7UER _cell.length_a 97.94 _cell.length_b 97.94 _cell.length_c 69.393 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UER _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -46.262 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C O3G ANP . A ANP 402 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc2 C O1B ANP . A ANP 402 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc3 D MG MG . A MG 403 1_555 G O HOH . A HOH 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc4 D MG MG . A MG 403 1_555 G O HOH . A HOH 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc5 D MG MG . A MG 403 1_555 G O HOH . A HOH 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc6 D MG MG . A MG 403 1_555 G O HOH . A HOH 578 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 19 n n PG O2G ANP sing 20 n n PG O3G ANP sing 21 n n PG N3B ANP sing 22 n n O2G HOG2 ANP sing 23 n n O3G HOG3 ANP sing 24 n n PB O1B ANP doub 25 n n PB O2B ANP sing 26 n n PB N3B ANP sing 27 n n PB O3A ANP sing 28 n n O2B HOB2 ANP sing 29 n n N3B HNB1 ANP sing 30 n n PA O1A ANP doub 31 n n PA O2A ANP sing 32 n n PA O3A ANP sing 33 n n PA O5' ANP sing 34 n n O2A HOA2 ANP sing 35 n n O5' C5' ANP sing 36 n n C5' C4' ANP sing 37 n n C5' "H5'1" ANP sing 38 n n C5' "H5'2" ANP sing 39 n n C4' O4' ANP sing 40 n n C4' C3' ANP sing 41 n n C4' H4' ANP sing 42 n n O4' C1' ANP sing 43 n n C3' O3' ANP sing 44 n n C3' C2' ANP sing 45 n n C3' H3' ANP sing 46 n n O3' HO3' ANP sing 47 n n C2' O2' ANP sing 48 n n C2' C1' ANP sing 49 n n C2' H2' ANP sing 50 n n O2' HO2' ANP sing 51 n n C1' N9 ANP sing 52 n n C1' H1' ANP sing 53 n n N9 C8 ANP sing 54 n y N9 C4 ANP sing 55 n y C8 N7 ANP doub 56 n y C8 H8 ANP sing 57 n n N7 C5 ANP sing 58 n y C5 C6 ANP sing 59 n y C5 C4 ANP doub 60 n y C6 N6 ANP sing 61 n n C6 N1 ANP doub 62 n y N6 HN61 ANP sing 63 n n N6 HN62 ANP sing 64 n n N1 C2 ANP sing 65 n y C2 N3 ANP doub 66 n y C2 H2 ANP sing 67 n n N3 C4 ANP sing 68 n y # _atom_sites.entry_id 7UER _atom_sites.fract_transf_matrix[1][1] 0.01021 _atom_sites.fract_transf_matrix[1][2] 0.005895 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01179 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014411 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 N1F A 1 401 1 N1F LIG . C 3 ANP A 1 402 501 ANP ANP . D 4 MG A 1 403 1 MG MG . E 5 ACT A 1 404 1 ACT ACT . F 6 EDO A 1 405 1 EDO EDO . G 7 HOH A 1 501 80 HOH HOH . G 7 HOH A 2 502 136 HOH HOH . G 7 HOH A 3 503 51 HOH HOH . G 7 HOH A 4 504 30 HOH HOH . G 7 HOH A 5 505 70 HOH HOH . G 7 HOH A 6 506 60 HOH HOH . G 7 HOH A 7 507 122 HOH HOH . G 7 HOH A 8 508 139 HOH HOH . G 7 HOH A 9 509 131 HOH HOH . G 7 HOH A 10 510 41 HOH HOH . G 7 HOH A 11 511 133 HOH HOH . G 7 HOH A 12 512 123 HOH HOH . G 7 HOH A 13 513 45 HOH HOH . G 7 HOH A 14 514 46 HOH HOH . G 7 HOH A 15 515 127 HOH HOH . G 7 HOH A 16 516 118 HOH HOH . G 7 HOH A 17 517 12 HOH HOH . G 7 HOH A 18 518 3 HOH HOH . G 7 HOH A 19 519 99 HOH HOH . G 7 HOH A 20 520 17 HOH HOH . G 7 HOH A 21 521 62 HOH HOH . G 7 HOH A 22 522 129 HOH HOH . G 7 HOH A 23 523 52 HOH HOH . G 7 HOH A 24 524 33 HOH HOH . G 7 HOH A 25 525 49 HOH HOH . G 7 HOH A 26 526 146 HOH HOH . G 7 HOH A 27 527 39 HOH HOH . G 7 HOH A 28 528 112 HOH HOH . G 7 HOH A 29 529 43 HOH HOH . G 7 HOH A 30 530 20 HOH HOH . G 7 HOH A 31 531 23 HOH HOH . G 7 HOH A 32 532 9 HOH HOH . G 7 HOH A 33 533 10 HOH HOH . G 7 HOH A 34 534 31 HOH HOH . G 7 HOH A 35 535 89 HOH HOH . G 7 HOH A 36 536 11 HOH HOH . G 7 HOH A 37 537 40 HOH HOH . G 7 HOH A 38 538 8 HOH HOH . G 7 HOH A 39 539 116 HOH HOH . G 7 HOH A 40 540 36 HOH HOH . G 7 HOH A 41 541 105 HOH HOH . G 7 HOH A 42 542 75 HOH HOH . G 7 HOH A 43 543 35 HOH HOH . G 7 HOH A 44 544 121 HOH HOH . G 7 HOH A 45 545 148 HOH HOH . G 7 HOH A 46 546 4 HOH HOH . G 7 HOH A 47 547 124 HOH HOH . G 7 HOH A 48 548 54 HOH HOH . G 7 HOH A 49 549 27 HOH HOH . G 7 HOH A 50 550 5 HOH HOH . G 7 HOH A 51 551 128 HOH HOH . G 7 HOH A 52 552 48 HOH HOH . G 7 HOH A 53 553 106 HOH HOH . G 7 HOH A 54 554 114 HOH HOH . G 7 HOH A 55 555 57 HOH HOH . G 7 HOH A 56 556 79 HOH HOH . G 7 HOH A 57 557 78 HOH HOH . G 7 HOH A 58 558 115 HOH HOH . G 7 HOH A 59 559 69 HOH HOH . G 7 HOH A 60 560 26 HOH HOH . G 7 HOH A 61 561 117 HOH HOH . G 7 HOH A 62 562 108 HOH HOH . G 7 HOH A 63 563 59 HOH HOH . G 7 HOH A 64 564 21 HOH HOH . G 7 HOH A 65 565 32 HOH HOH . G 7 HOH A 66 566 71 HOH HOH . G 7 HOH A 67 567 103 HOH HOH . G 7 HOH A 68 568 24 HOH HOH . G 7 HOH A 69 569 1 HOH HOH . G 7 HOH A 70 570 84 HOH HOH . G 7 HOH A 71 571 147 HOH HOH . G 7 HOH A 72 572 22 HOH HOH . G 7 HOH A 73 573 94 HOH HOH . G 7 HOH A 74 574 81 HOH HOH . G 7 HOH A 75 575 153 HOH HOH . G 7 HOH A 76 576 85 HOH HOH . G 7 HOH A 77 577 88 HOH HOH . G 7 HOH A 78 578 2 HOH HOH . G 7 HOH A 79 579 6 HOH HOH . G 7 HOH A 80 580 145 HOH HOH . G 7 HOH A 81 581 15 HOH HOH . G 7 HOH A 82 582 74 HOH HOH . G 7 HOH A 83 583 120 HOH HOH . G 7 HOH A 84 584 109 HOH HOH . G 7 HOH A 85 585 110 HOH HOH . G 7 HOH A 86 586 37 HOH HOH . G 7 HOH A 87 587 68 HOH HOH . G 7 HOH A 88 588 95 HOH HOH . G 7 HOH A 89 589 47 HOH HOH . G 7 HOH A 90 590 19 HOH HOH . G 7 HOH A 91 591 137 HOH HOH . G 7 HOH A 92 592 34 HOH HOH . G 7 HOH A 93 593 25 HOH HOH . G 7 HOH A 94 594 29 HOH HOH . G 7 HOH A 95 595 82 HOH HOH . G 7 HOH A 96 596 113 HOH HOH . G 7 HOH A 97 597 67 HOH HOH . G 7 HOH A 98 598 107 HOH HOH . G 7 HOH A 99 599 55 HOH HOH . G 7 HOH A 100 600 56 HOH HOH . G 7 HOH A 101 601 50 HOH HOH . G 7 HOH A 102 602 93 HOH HOH . G 7 HOH A 103 603 104 HOH HOH . G 7 HOH A 104 604 102 HOH HOH . G 7 HOH A 105 605 92 HOH HOH . G 7 HOH A 106 606 132 HOH HOH . G 7 HOH A 107 607 130 HOH HOH . G 7 HOH A 108 608 90 HOH HOH . G 7 HOH A 109 609 61 HOH HOH . G 7 HOH A 110 610 28 HOH HOH . G 7 HOH A 111 611 125 HOH HOH . G 7 HOH A 112 612 144 HOH HOH . G 7 HOH A 113 613 76 HOH HOH . G 7 HOH A 114 614 14 HOH HOH . G 7 HOH A 115 615 58 HOH HOH . G 7 HOH A 116 616 64 HOH HOH . G 7 HOH A 117 617 126 HOH HOH . G 7 HOH A 118 618 53 HOH HOH . G 7 HOH A 119 619 16 HOH HOH . G 7 HOH A 120 620 150 HOH HOH . G 7 HOH A 121 621 86 HOH HOH . G 7 HOH A 122 622 38 HOH HOH . G 7 HOH A 123 623 98 HOH HOH . G 7 HOH A 124 624 142 HOH HOH . G 7 HOH A 125 625 44 HOH HOH . G 7 HOH A 126 626 141 HOH HOH . G 7 HOH A 127 627 7 HOH HOH . G 7 HOH A 128 628 138 HOH HOH . G 7 HOH A 129 629 13 HOH HOH . G 7 HOH A 130 630 119 HOH HOH . G 7 HOH A 131 631 65 HOH HOH . G 7 HOH A 132 632 91 HOH HOH . G 7 HOH A 133 633 143 HOH HOH . G 7 HOH A 134 634 100 HOH HOH . G 7 HOH A 135 635 18 HOH HOH . G 7 HOH A 136 636 42 HOH HOH . G 7 HOH A 137 637 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 3 -26.464 17.472 -13.288 1 28.71 ? PG ANP 402 A 1 HETATM 2 O O1G ANP . . . C 3 -25.731 18.076 -14.411 1 29.52 ? O1G ANP 402 A 1 HETATM 3 O O2G ANP . . . C 3 -27.556 16.544 -13.835 1 24.84 ? O2G ANP 402 A 1 HETATM 4 O O3G ANP . . . C 3 -27.162 18.629 -12.489 1 30.43 ? O3G ANP 402 A 1 HETATM 5 P PB ANP . . . C 3 -25.302 16.429 -10.914 1 22.31 ? PB ANP 402 A 1 HETATM 6 O O1B ANP . . . C 3 -26.442 17.144 -10.331 1 29.37 ? O1B ANP 402 A 1 HETATM 7 O O2B ANP . . . C 3 -25.215 14.995 -10.35 1 18.18 ? O2B ANP 402 A 1 HETATM 8 N N3B ANP . . . C 3 -25.328 16.553 -12.52 1 29.15 ? N3B ANP 402 A 1 HETATM 9 P PA ANP . . . C 3 -23.436 17.719 -9.002 1 17.91 ? PA ANP 402 A 1 HETATM 10 O O1A ANP . . . C 3 -23.818 16.717 -7.915 1 18.48 -1 O1A ANP 402 A 1 HETATM 11 O O2A ANP . . . C 3 -23.797 19.154 -8.681 1 17.99 ? O2A ANP 402 A 1 HETATM 12 O O3A ANP . . . C 3 -24.077 17.296 -10.391 1 17.58 ? O3A ANP 402 A 1 HETATM 13 O O5' ANP . . . C 3 -21.858 17.69 -9.349 1 17.75 ? O5' ANP 402 A 1 HETATM 14 C C5' ANP . . . C 3 -21.283 16.578 -10.045 1 18.34 ? C5' ANP 402 A 1 HETATM 15 C C4' ANP . . . C 3 -19.786 16.875 -10.178 1 20.23 ? C4' ANP 402 A 1 HETATM 16 O O4' ANP . . . C 3 -19.216 16.978 -8.869 1 20.91 ? O4' ANP 402 A 1 HETATM 17 C C3' ANP . . . C 3 -19.058 15.71 -10.854 1 19.4 ? C3' ANP 402 A 1 HETATM 18 O O3' ANP . . . C 3 -19.046 15.977 -12.261 1 19.96 ? O3' ANP 402 A 1 HETATM 19 C C2' ANP . . . C 3 -17.631 15.842 -10.264 1 19.7 ? C2' ANP 402 A 1 HETATM 20 O O2' ANP . . . C 3 -16.868 16.806 -11.002 1 19.21 ? O2' ANP 402 A 1 HETATM 21 C C1' ANP . . . C 3 -17.887 16.43 -8.863 1 18.76 ? C1' ANP 402 A 1 HETATM 22 N N9 ANP . . . C 3 -17.86 15.46 -7.778 1 19.52 ? N9 ANP 402 A 1 HETATM 23 C C8 ANP . . . C 3 -17.623 15.788 -6.48 1 20.31 ? C8 ANP 402 A 1 HETATM 24 N N7 ANP . . . C 3 -17.7 14.708 -5.717 1 21.7 ? N7 ANP 402 A 1 HETATM 25 C C5 ANP . . . C 3 -17.999 13.647 -6.505 1 21.65 ? C5 ANP 402 A 1 HETATM 26 C C6 ANP . . . C 3 -18.2 12.276 -6.261 1 23.82 ? C6 ANP 402 A 1 HETATM 27 N N6 ANP . . . C 3 -18.102 11.748 -4.982 1 29.15 ? N6 ANP 402 A 1 HETATM 28 N N1 ANP . . . C 3 -18.484 11.474 -7.292 1 24.41 ? N1 ANP 402 A 1 HETATM 29 C C2 ANP . . . C 3 -18.575 12.001 -8.493 1 24.71 ? C2 ANP 402 A 1 HETATM 30 N N3 ANP . . . C 3 -18.399 13.266 -8.815 1 23.73 ? N3 ANP 402 A 1 HETATM 31 C C4 ANP . . . C 3 -18.102 14.119 -7.827 1 19.11 ? C4 ANP 402 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #