data_7UEU # _model_server_result.job_id uKUlZHIhXLi1x-BSqMtVnw _model_server_result.datetime_utc '2025-01-05 03:20:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ueu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 7UEU # _exptl.entry_id 7UEU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 426.216 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'AMP PHOSPHORAMIDATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7UEU _cell.length_a 98.199 _cell.length_b 98.199 _cell.length_c 68.938 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UEU _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -22.979333 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C O2B AN2 . A AN2 402 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc2 D MG MG . A MG 403 1_555 F O HOH . A HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc3 D MG MG . A MG 403 1_555 F O HOH . A HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc4 D MG MG . A MG 403 1_555 F O HOH . A HOH 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc5 D MG MG . A MG 403 1_555 F O HOH . A HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc6 D MG MG . A MG 403 1_555 F O HOH . A HOH 520 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? # _chem_comp.formula 'C10 H16 N6 O9 P2' _chem_comp.formula_weight 426.216 _chem_comp.id AN2 _chem_comp.mon_nstd_flag . _chem_comp.name 'AMP PHOSPHORAMIDATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3B PB AN2 sing 13 n n N3B H3B1 AN2 sing 14 n n N3B H3B2 AN2 sing 15 n n PB O2B AN2 sing 16 n n PB O1B AN2 doub 17 n n PB O3A AN2 sing 18 n n O2B HO2B AN2 sing 19 n n O3A PA AN2 sing 20 n n PA O1A AN2 doub 21 n n PA O2A AN2 sing 22 n n PA O5' AN2 sing 23 n n O2A HO2A AN2 sing 24 n n O5' C5' AN2 sing 25 n n C5' C4' AN2 sing 26 n n C5' "H5'1" AN2 sing 27 n n C5' "H5'2" AN2 sing 28 n n C4' O4' AN2 sing 29 n n C4' C3' AN2 sing 30 n n C4' H4' AN2 sing 31 n n O4' C1' AN2 sing 32 n n C3' O3' AN2 sing 33 n n C3' C2' AN2 sing 34 n n C3' H3' AN2 sing 35 n n O3' HA AN2 sing 36 n n C2' O2' AN2 sing 37 n n C2' C1' AN2 sing 38 n n C2' H2' AN2 sing 39 n n O2' HB AN2 sing 40 n n C1' N9 AN2 sing 41 n n C1' H1' AN2 sing 42 n n N9 C8 AN2 sing 43 n y N9 C4 AN2 sing 44 n y C8 N7 AN2 doub 45 n y C8 H8 AN2 sing 46 n n N7 C5 AN2 sing 47 n y C5 C4 AN2 doub 48 n y C5 C6 AN2 sing 49 n y C4 N3 AN2 sing 50 n y N3 C2 AN2 doub 51 n y C2 N1 AN2 sing 52 n y C2 H2 AN2 sing 53 n n N1 C6 AN2 doub 54 n y C6 N6 AN2 sing 55 n n N6 H6N1 AN2 sing 56 n n N6 H6N2 AN2 sing 57 n n # _atom_sites.entry_id 7UEU _atom_sites.fract_transf_matrix[1][1] 0.010183 _atom_sites.fract_transf_matrix[1][2] 0.005879 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011759 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014506 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 YX5 A 1 401 401 YX5 YX5 . C 3 AN2 A 1 402 401 AN2 AN2 . D 4 MG A 1 403 1 MG MG . E 5 EDO A 1 404 1 EDO EDO . F 6 HOH A 1 501 131 HOH HOH . F 6 HOH A 2 502 111 HOH HOH . F 6 HOH A 3 503 50 HOH HOH . F 6 HOH A 4 504 160 HOH HOH . F 6 HOH A 5 505 39 HOH HOH . F 6 HOH A 6 506 3 HOH HOH . F 6 HOH A 7 507 16 HOH HOH . F 6 HOH A 8 508 52 HOH HOH . F 6 HOH A 9 509 69 HOH HOH . F 6 HOH A 10 510 159 HOH HOH . F 6 HOH A 11 511 29 HOH HOH . F 6 HOH A 12 512 6 HOH HOH . F 6 HOH A 13 513 2 HOH HOH . F 6 HOH A 14 514 43 HOH HOH . F 6 HOH A 15 515 112 HOH HOH . F 6 HOH A 16 516 165 HOH HOH . F 6 HOH A 17 517 14 HOH HOH . F 6 HOH A 18 518 20 HOH HOH . F 6 HOH A 19 519 109 HOH HOH . F 6 HOH A 20 520 4 HOH HOH . F 6 HOH A 21 521 7 HOH HOH . F 6 HOH A 22 522 110 HOH HOH . F 6 HOH A 23 523 38 HOH HOH . F 6 HOH A 24 524 163 HOH HOH . F 6 HOH A 25 525 21 HOH HOH . F 6 HOH A 26 526 27 HOH HOH . F 6 HOH A 27 527 35 HOH HOH . F 6 HOH A 28 528 162 HOH HOH . F 6 HOH A 29 529 48 HOH HOH . F 6 HOH A 30 530 24 HOH HOH . F 6 HOH A 31 531 40 HOH HOH . F 6 HOH A 32 532 106 HOH HOH . F 6 HOH A 33 533 96 HOH HOH . F 6 HOH A 34 534 59 HOH HOH . F 6 HOH A 35 535 33 HOH HOH . F 6 HOH A 36 536 123 HOH HOH . F 6 HOH A 37 537 134 HOH HOH . F 6 HOH A 38 538 130 HOH HOH . F 6 HOH A 39 539 164 HOH HOH . F 6 HOH A 40 540 58 HOH HOH . F 6 HOH A 41 541 153 HOH HOH . F 6 HOH A 42 542 53 HOH HOH . F 6 HOH A 43 543 142 HOH HOH . F 6 HOH A 44 544 71 HOH HOH . F 6 HOH A 45 545 5 HOH HOH . F 6 HOH A 46 546 28 HOH HOH . F 6 HOH A 47 547 113 HOH HOH . F 6 HOH A 48 548 161 HOH HOH . F 6 HOH A 49 549 156 HOH HOH . F 6 HOH A 50 550 154 HOH HOH . F 6 HOH A 51 551 26 HOH HOH . F 6 HOH A 52 552 119 HOH HOH . F 6 HOH A 53 553 12 HOH HOH . F 6 HOH A 54 554 54 HOH HOH . F 6 HOH A 55 555 46 HOH HOH . F 6 HOH A 56 556 115 HOH HOH . F 6 HOH A 57 557 13 HOH HOH . F 6 HOH A 58 558 17 HOH HOH . F 6 HOH A 59 559 104 HOH HOH . F 6 HOH A 60 560 138 HOH HOH . F 6 HOH A 61 561 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3B AN2 . . . C 3 -27.306 -13.629 -1.091 1 31.49 ? N3B AN2 402 A 1 HETATM 2 P PB AN2 . . . C 3 -27.091 -13.638 0.572 1 37.99 ? PB AN2 402 A 1 HETATM 3 O O2B AN2 . . . C 3 -28.361 -14.366 1.213 1 34.02 -1 O2B AN2 402 A 1 HETATM 4 O O1B AN2 . . . C 3 -25.82 -14.244 0.972 1 35 ? O1B AN2 402 A 1 HETATM 5 O O3A AN2 . . . C 3 -27.06 -12.1 0.999 1 35.28 ? O3A AN2 402 A 1 HETATM 6 P PA AN2 . . . C 3 -27.123 -11.432 2.458 1 38.72 ? PA AN2 402 A 1 HETATM 7 O O1A AN2 . . . C 3 -28.545 -11.036 2.808 1 40.69 ? O1A AN2 402 A 1 HETATM 8 O O2A AN2 . . . C 3 -26.538 -12.313 3.545 1 39.44 -1 O2A AN2 402 A 1 HETATM 9 O O5' AN2 . . . C 3 -26.257 -10.089 2.314 1 37.26 ? O5' AN2 402 A 1 HETATM 10 C C5' AN2 . . . C 3 -25.006 -10.171 1.618 1 34.96 ? C5' AN2 402 A 1 HETATM 11 C C4' AN2 . . . C 3 -24.43 -8.756 1.495 1 36.93 ? C4' AN2 402 A 1 HETATM 12 O O4' AN2 . . . C 3 -24.156 -8.227 2.81 1 37.65 ? O4' AN2 402 A 1 HETATM 13 C C3' AN2 . . . C 3 -23.078 -8.716 0.749 1 37.62 ? C3' AN2 402 A 1 HETATM 14 O O3' AN2 . . . C 3 -23.312 -8.529 -0.643 1 36.5 ? O3' AN2 402 A 1 HETATM 15 C C2' AN2 . . . C 3 -22.423 -7.443 1.338 1 39.59 ? C2' AN2 402 A 1 HETATM 16 O O2' AN2 . . . C 3 -22.882 -6.282 0.645 1 37.07 ? O2' AN2 402 A 1 HETATM 17 C C1' AN2 . . . C 3 -23.032 -7.337 2.749 1 36.69 ? C1' AN2 402 A 1 HETATM 18 N N9 AN2 . . . C 3 -22.164 -7.763 3.831 1 35.12 ? N9 AN2 402 A 1 HETATM 19 C C8 AN2 . . . C 3 -22.302 -7.345 5.124 1 36.59 ? C8 AN2 402 A 1 HETATM 20 N N7 AN2 . . . C 3 -21.403 -7.913 5.872 1 39.37 ? N7 AN2 402 A 1 HETATM 21 C C5 AN2 . . . C 3 -20.663 -8.724 5.099 1 40.17 ? C5 AN2 402 A 1 HETATM 22 C C4 AN2 . . . C 3 -21.13 -8.656 3.782 1 37.59 ? C4 AN2 402 A 1 HETATM 23 N N3 AN2 . . . C 3 -20.541 -9.382 2.839 1 44.15 ? N3 AN2 402 A 1 HETATM 24 C C2 AN2 . . . C 3 -19.524 -10.168 3.148 1 40.75 ? C2 AN2 402 A 1 HETATM 25 N N1 AN2 . . . C 3 -19.053 -10.244 4.389 1 41.5 ? N1 AN2 402 A 1 HETATM 26 C C6 AN2 . . . C 3 -19.59 -9.55 5.39 1 41.11 ? C6 AN2 402 A 1 HETATM 27 N N6 AN2 . . . C 3 -18.952 -9.798 6.595 1 44.21 ? N6 AN2 402 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #