data_7UEV # _model_server_result.job_id 1i2ES7QYb2KUh_DGEkT1YA _model_server_result.datetime_utc '2024-12-23 07:57:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7uev # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 7UEV # _exptl.entry_id 7UEV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7UEV _cell.length_a 98.233 _cell.length_b 98.233 _cell.length_c 69.096 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UEV _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -23.032 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D O3G ANP . A ANP 403 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc2 D O1B ANP . A ANP 403 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc3 E MG MG . A MG 404 1_555 H O HOH . A HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc4 E MG MG . A MG 404 1_555 H O HOH . A HOH 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc5 E MG MG . A MG 404 1_555 H O HOH . A HOH 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc6 E MG MG . A MG 404 1_555 H O HOH . A HOH 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 19 n n PG O2G ANP sing 20 n n PG O3G ANP sing 21 n n PG N3B ANP sing 22 n n O2G HOG2 ANP sing 23 n n O3G HOG3 ANP sing 24 n n PB O1B ANP doub 25 n n PB O2B ANP sing 26 n n PB N3B ANP sing 27 n n PB O3A ANP sing 28 n n O2B HOB2 ANP sing 29 n n N3B HNB1 ANP sing 30 n n PA O1A ANP doub 31 n n PA O2A ANP sing 32 n n PA O3A ANP sing 33 n n PA O5' ANP sing 34 n n O2A HOA2 ANP sing 35 n n O5' C5' ANP sing 36 n n C5' C4' ANP sing 37 n n C5' "H5'1" ANP sing 38 n n C5' "H5'2" ANP sing 39 n n C4' O4' ANP sing 40 n n C4' C3' ANP sing 41 n n C4' H4' ANP sing 42 n n O4' C1' ANP sing 43 n n C3' O3' ANP sing 44 n n C3' C2' ANP sing 45 n n C3' H3' ANP sing 46 n n O3' HO3' ANP sing 47 n n C2' O2' ANP sing 48 n n C2' C1' ANP sing 49 n n C2' H2' ANP sing 50 n n O2' HO2' ANP sing 51 n n C1' N9 ANP sing 52 n n C1' H1' ANP sing 53 n n N9 C8 ANP sing 54 n y N9 C4 ANP sing 55 n y C8 N7 ANP doub 56 n y C8 H8 ANP sing 57 n n N7 C5 ANP sing 58 n y C5 C6 ANP sing 59 n y C5 C4 ANP doub 60 n y C6 N6 ANP sing 61 n n C6 N1 ANP doub 62 n y N6 HN61 ANP sing 63 n n N6 HN62 ANP sing 64 n n N1 C2 ANP sing 65 n y C2 N3 ANP doub 66 n y C2 H2 ANP sing 67 n n N3 C4 ANP sing 68 n y # _atom_sites.entry_id 7UEV _atom_sites.fract_transf_matrix[1][1] 0.01018 _atom_sites.fract_transf_matrix[1][2] 0.005877 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011755 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014473 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 N0I A 1 401 401 N0I LIG . C 3 ACT A 1 402 501 ACT ACT . D 4 ANP A 1 403 501 ANP ANP . E 5 MG A 1 404 1 MG MG . F 6 EDO A 1 405 1 EDO EDO . G 7 CL A 1 406 1 CL CL . H 8 HOH A 1 501 203 HOH HOH . H 8 HOH A 2 502 225 HOH HOH . H 8 HOH A 3 503 166 HOH HOH . H 8 HOH A 4 504 44 HOH HOH . H 8 HOH A 5 505 80 HOH HOH . H 8 HOH A 6 506 98 HOH HOH . H 8 HOH A 7 507 46 HOH HOH . H 8 HOH A 8 508 5 HOH HOH . H 8 HOH A 9 509 136 HOH HOH . H 8 HOH A 10 510 84 HOH HOH . H 8 HOH A 11 511 40 HOH HOH . H 8 HOH A 12 512 215 HOH HOH . H 8 HOH A 13 513 72 HOH HOH . H 8 HOH A 14 514 226 HOH HOH . H 8 HOH A 15 515 62 HOH HOH . H 8 HOH A 16 516 214 HOH HOH . H 8 HOH A 17 517 57 HOH HOH . H 8 HOH A 18 518 217 HOH HOH . H 8 HOH A 19 519 212 HOH HOH . H 8 HOH A 20 520 31 HOH HOH . H 8 HOH A 21 521 20 HOH HOH . H 8 HOH A 22 522 26 HOH HOH . H 8 HOH A 23 523 206 HOH HOH . H 8 HOH A 24 524 63 HOH HOH . H 8 HOH A 25 525 78 HOH HOH . H 8 HOH A 26 526 59 HOH HOH . H 8 HOH A 27 527 188 HOH HOH . H 8 HOH A 28 528 50 HOH HOH . H 8 HOH A 29 529 56 HOH HOH . H 8 HOH A 30 530 179 HOH HOH . H 8 HOH A 31 531 55 HOH HOH . H 8 HOH A 32 532 224 HOH HOH . H 8 HOH A 33 533 15 HOH HOH . H 8 HOH A 34 534 221 HOH HOH . H 8 HOH A 35 535 149 HOH HOH . H 8 HOH A 36 536 7 HOH HOH . H 8 HOH A 37 537 187 HOH HOH . H 8 HOH A 38 538 181 HOH HOH . H 8 HOH A 39 539 69 HOH HOH . H 8 HOH A 40 540 205 HOH HOH . H 8 HOH A 41 541 34 HOH HOH . H 8 HOH A 42 542 6 HOH HOH . H 8 HOH A 43 543 223 HOH HOH . H 8 HOH A 44 544 94 HOH HOH . H 8 HOH A 45 545 97 HOH HOH . H 8 HOH A 46 546 4 HOH HOH . H 8 HOH A 47 547 14 HOH HOH . H 8 HOH A 48 548 11 HOH HOH . H 8 HOH A 49 549 32 HOH HOH . H 8 HOH A 50 550 36 HOH HOH . H 8 HOH A 51 551 161 HOH HOH . H 8 HOH A 52 552 22 HOH HOH . H 8 HOH A 53 553 27 HOH HOH . H 8 HOH A 54 554 227 HOH HOH . H 8 HOH A 55 555 202 HOH HOH . H 8 HOH A 56 556 41 HOH HOH . H 8 HOH A 57 557 193 HOH HOH . H 8 HOH A 58 558 48 HOH HOH . H 8 HOH A 59 559 162 HOH HOH . H 8 HOH A 60 560 28 HOH HOH . H 8 HOH A 61 561 152 HOH HOH . H 8 HOH A 62 562 23 HOH HOH . H 8 HOH A 63 563 119 HOH HOH . H 8 HOH A 64 564 88 HOH HOH . H 8 HOH A 65 565 18 HOH HOH . H 8 HOH A 66 566 231 HOH HOH . H 8 HOH A 67 567 218 HOH HOH . H 8 HOH A 68 568 2 HOH HOH . H 8 HOH A 69 569 52 HOH HOH . H 8 HOH A 70 570 207 HOH HOH . H 8 HOH A 71 571 47 HOH HOH . H 8 HOH A 72 572 196 HOH HOH . H 8 HOH A 73 573 229 HOH HOH . H 8 HOH A 74 574 35 HOH HOH . H 8 HOH A 75 575 29 HOH HOH . H 8 HOH A 76 576 194 HOH HOH . H 8 HOH A 77 577 82 HOH HOH . H 8 HOH A 78 578 228 HOH HOH . H 8 HOH A 79 579 51 HOH HOH . H 8 HOH A 80 580 66 HOH HOH . H 8 HOH A 81 581 180 HOH HOH . H 8 HOH A 82 582 104 HOH HOH . H 8 HOH A 83 583 79 HOH HOH . H 8 HOH A 84 584 191 HOH HOH . H 8 HOH A 85 585 213 HOH HOH . H 8 HOH A 86 586 8 HOH HOH . H 8 HOH A 87 587 195 HOH HOH . H 8 HOH A 88 588 33 HOH HOH . H 8 HOH A 89 589 65 HOH HOH . H 8 HOH A 90 590 135 HOH HOH . H 8 HOH A 91 591 37 HOH HOH . H 8 HOH A 92 592 49 HOH HOH . H 8 HOH A 93 593 53 HOH HOH . H 8 HOH A 94 594 192 HOH HOH . H 8 HOH A 95 595 60 HOH HOH . H 8 HOH A 96 596 73 HOH HOH . H 8 HOH A 97 597 211 HOH HOH . H 8 HOH A 98 598 92 HOH HOH . H 8 HOH A 99 599 216 HOH HOH . H 8 HOH A 100 600 71 HOH HOH . H 8 HOH A 101 601 185 HOH HOH . H 8 HOH A 102 602 183 HOH HOH . H 8 HOH A 103 603 19 HOH HOH . H 8 HOH A 104 604 38 HOH HOH . H 8 HOH A 105 605 124 HOH HOH . H 8 HOH A 106 606 17 HOH HOH . H 8 HOH A 107 607 42 HOH HOH . H 8 HOH A 108 608 95 HOH HOH . H 8 HOH A 109 609 208 HOH HOH . H 8 HOH A 110 610 61 HOH HOH . H 8 HOH A 111 611 210 HOH HOH . H 8 HOH A 112 612 219 HOH HOH . H 8 HOH A 113 613 16 HOH HOH . H 8 HOH A 114 614 199 HOH HOH . H 8 HOH A 115 615 189 HOH HOH . H 8 HOH A 116 616 204 HOH HOH . H 8 HOH A 117 617 21 HOH HOH . H 8 HOH A 118 618 230 HOH HOH . H 8 HOH A 119 619 155 HOH HOH . H 8 HOH A 120 620 198 HOH HOH . H 8 HOH A 121 621 209 HOH HOH . H 8 HOH A 122 622 58 HOH HOH . H 8 HOH A 123 623 220 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . D 4 -28.452 -14.22 -1.794 1 28.34 ? PG ANP 403 A 1 HETATM 2 O O1G ANP . . . D 4 -28.49 -13.236 -2.916 1 29.38 ? O1G ANP 403 A 1 HETATM 3 O O2G ANP . . . D 4 -28.083 -15.556 -2.365 1 27.14 ? O2G ANP 403 A 1 HETATM 4 O O3G ANP . . . D 4 -29.806 -14.254 -1.058 1 33.85 ? O3G ANP 403 A 1 HETATM 5 P PB ANP . . . D 4 -26.885 -13.683 0.591 1 23.9 ? PB ANP 403 A 1 HETATM 6 O O1B ANP . . . D 4 -28.049 -14.314 1.276 1 31.43 ? O1B ANP 403 A 1 HETATM 7 O O2B ANP . . . D 4 -25.639 -14.332 1.125 1 20.88 ? O2B ANP 403 A 1 HETATM 8 N N3B ANP . . . D 4 -27.134 -13.69 -0.97 1 28.01 ? N3B ANP 403 A 1 HETATM 9 P PA ANP . . . D 4 -27.068 -11.467 2.514 1 19.67 ? PA ANP 403 A 1 HETATM 10 O O1A ANP . . . D 4 -26.399 -12.31 3.57 1 20.89 ? O1A ANP 403 A 1 HETATM 11 O O2A ANP . . . D 4 -28.48 -11.069 2.865 1 18.34 ? O2A ANP 403 A 1 HETATM 12 O O3A ANP . . . D 4 -27.1 -12.214 1.118 1 18.7 ? O3A ANP 403 A 1 HETATM 13 O O5' ANP . . . D 4 -26.259 -10.131 2.115 1 20.02 ? O5' ANP 403 A 1 HETATM 14 C C5' ANP . . . D 4 -24.964 -10.221 1.499 1 21.63 ? C5' ANP 403 A 1 HETATM 15 C C4' ANP . . . D 4 -24.446 -8.783 1.357 1 22.48 ? C4' ANP 403 A 1 HETATM 16 O O4' ANP . . . D 4 -24.276 -8.24 2.669 1 22.49 ? O4' ANP 403 A 1 HETATM 17 C C3' ANP . . . D 4 -23.079 -8.68 0.654 1 21.03 ? C3' ANP 403 A 1 HETATM 18 O O3' ANP . . . D 4 -23.391 -8.516 -0.741 1 21.64 ? O3' ANP 403 A 1 HETATM 19 C C2' ANP . . . D 4 -22.545 -7.368 1.275 1 21.52 ? C2' ANP 403 A 1 HETATM 20 O O2' ANP . . . D 4 -22.999 -6.197 0.567 1 20.41 ? O2' ANP 403 A 1 HETATM 21 C C1' ANP . . . D 4 -23.196 -7.312 2.684 1 20.25 ? C1' ANP 403 A 1 HETATM 22 N N9 ANP . . . D 4 -22.329 -7.743 3.777 1 21.82 ? N9 ANP 403 A 1 HETATM 23 C C8 ANP . . . D 4 -22.49 -7.362 5.079 1 22.8 ? C8 ANP 403 A 1 HETATM 24 N N7 ANP . . . D 4 -21.601 -7.972 5.831 1 24.44 ? N7 ANP 403 A 1 HETATM 25 C C5 ANP . . . D 4 -20.832 -8.763 5.042 1 24.44 ? C5 ANP 403 A 1 HETATM 26 C C6 ANP . . . D 4 -19.734 -9.606 5.29 1 26.75 ? C6 ANP 403 A 1 HETATM 27 N N6 ANP . . . D 4 -19.218 -9.772 6.576 1 32.29 ? N6 ANP 403 A 1 HETATM 28 N N1 ANP . . . D 4 -19.187 -10.26 4.251 1 27.58 ? N1 ANP 403 A 1 HETATM 29 C C2 ANP . . . D 4 -19.704 -10.11 3.053 1 26.32 ? C2 ANP 403 A 1 HETATM 30 N N3 ANP . . . D 4 -20.707 -9.329 2.733 1 26.74 ? N3 ANP 403 A 1 HETATM 31 C C4 ANP . . . D 4 -21.29 -8.619 3.72 1 21.82 ? C4 ANP 403 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 48 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #