data_7UEX # _model_server_result.job_id v8OpTOzCdStbi0zlJTj7Eg _model_server_result.datetime_utc '2024-10-18 04:33:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7uex # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 7UEX # _exptl.entry_id 7UEX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7UEX _cell.length_a 97.907 _cell.length_b 97.907 _cell.length_c 68.907 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UEX _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -45.938 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D O3G ANP . A ANP 403 1_555 H MG MG . A MG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc2 D O1B ANP . A ANP 403 1_555 H MG MG . A MG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc3 H MG MG . A MG 407 1_555 I O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc4 H MG MG . A MG 407 1_555 I O HOH . A HOH 532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc5 H MG MG . A MG 407 1_555 I O HOH . A HOH 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc6 H MG MG . A MG 407 1_555 I O HOH . A HOH 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 19 n n PG O2G ANP sing 20 n n PG O3G ANP sing 21 n n PG N3B ANP sing 22 n n O2G HOG2 ANP sing 23 n n O3G HOG3 ANP sing 24 n n PB O1B ANP doub 25 n n PB O2B ANP sing 26 n n PB N3B ANP sing 27 n n PB O3A ANP sing 28 n n O2B HOB2 ANP sing 29 n n N3B HNB1 ANP sing 30 n n PA O1A ANP doub 31 n n PA O2A ANP sing 32 n n PA O3A ANP sing 33 n n PA O5' ANP sing 34 n n O2A HOA2 ANP sing 35 n n O5' C5' ANP sing 36 n n C5' C4' ANP sing 37 n n C5' "H5'1" ANP sing 38 n n C5' "H5'2" ANP sing 39 n n C4' O4' ANP sing 40 n n C4' C3' ANP sing 41 n n C4' H4' ANP sing 42 n n O4' C1' ANP sing 43 n n C3' O3' ANP sing 44 n n C3' C2' ANP sing 45 n n C3' H3' ANP sing 46 n n O3' HO3' ANP sing 47 n n C2' O2' ANP sing 48 n n C2' C1' ANP sing 49 n n C2' H2' ANP sing 50 n n O2' HO2' ANP sing 51 n n C1' N9 ANP sing 52 n n C1' H1' ANP sing 53 n n N9 C8 ANP sing 54 n y N9 C4 ANP sing 55 n y C8 N7 ANP doub 56 n y C8 H8 ANP sing 57 n n N7 C5 ANP sing 58 n y C5 C6 ANP sing 59 n y C5 C4 ANP doub 60 n y C6 N6 ANP sing 61 n n C6 N1 ANP doub 62 n y N6 HN61 ANP sing 63 n n N6 HN62 ANP sing 64 n n N1 C2 ANP sing 65 n y C2 N3 ANP doub 66 n y C2 H2 ANP sing 67 n n N3 C4 ANP sing 68 n y # _atom_sites.entry_id 7UEX _atom_sites.fract_transf_matrix[1][1] 0.010214 _atom_sites.fract_transf_matrix[1][2] 0.005897 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011794 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014512 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 401 401 ACT ACT . C 3 MZI A 1 402 501 MZI LIG . D 4 ANP A 1 403 502 ANP ANP . E 5 EDO A 1 404 1 EDO EDO . F 5 EDO A 1 405 3 EDO EDO . G 6 CL A 1 406 1 CL CL . H 7 MG A 1 407 403 MG MG . I 8 HOH A 1 501 192 HOH HOH . I 8 HOH A 2 502 15 HOH HOH . I 8 HOH A 3 503 184 HOH HOH . I 8 HOH A 4 504 219 HOH HOH . I 8 HOH A 5 505 208 HOH HOH . I 8 HOH A 6 506 98 HOH HOH . I 8 HOH A 7 507 546 HOH HOH . I 8 HOH A 8 508 200 HOH HOH . I 8 HOH A 9 509 194 HOH HOH . I 8 HOH A 10 510 161 HOH HOH . I 8 HOH A 11 511 57 HOH HOH . I 8 HOH A 12 512 72 HOH HOH . I 8 HOH A 13 513 10 HOH HOH . I 8 HOH A 14 514 218 HOH HOH . I 8 HOH A 15 515 46 HOH HOH . I 8 HOH A 16 516 59 HOH HOH . I 8 HOH A 17 517 217 HOH HOH . I 8 HOH A 18 518 62 HOH HOH . I 8 HOH A 19 519 211 HOH HOH . I 8 HOH A 20 520 209 HOH HOH . I 8 HOH A 21 521 84 HOH HOH . I 8 HOH A 22 522 199 HOH HOH . I 8 HOH A 23 523 20 HOH HOH . I 8 HOH A 24 524 50 HOH HOH . I 8 HOH A 25 525 55 HOH HOH . I 8 HOH A 26 526 26 HOH HOH . I 8 HOH A 27 527 177 HOH HOH . I 8 HOH A 28 528 195 HOH HOH . I 8 HOH A 29 529 214 HOH HOH . I 8 HOH A 30 530 69 HOH HOH . I 8 HOH A 31 531 48 HOH HOH . I 8 HOH A 32 532 535 HOH HOH . I 8 HOH A 33 533 78 HOH HOH . I 8 HOH A 34 534 14 HOH HOH . I 8 HOH A 35 535 34 HOH HOH . I 8 HOH A 36 536 213 HOH HOH . I 8 HOH A 37 537 553 HOH HOH . I 8 HOH A 38 538 216 HOH HOH . I 8 HOH A 39 539 32 HOH HOH . I 8 HOH A 40 540 11 HOH HOH . I 8 HOH A 41 541 215 HOH HOH . I 8 HOH A 42 542 2 HOH HOH . I 8 HOH A 43 543 92 HOH HOH . I 8 HOH A 44 544 560 HOH HOH . I 8 HOH A 45 545 56 HOH HOH . I 8 HOH A 46 546 191 HOH HOH . I 8 HOH A 47 547 203 HOH HOH . I 8 HOH A 48 548 31 HOH HOH . I 8 HOH A 49 549 36 HOH HOH . I 8 HOH A 50 550 221 HOH HOH . I 8 HOH A 51 551 27 HOH HOH . I 8 HOH A 52 552 226 HOH HOH . I 8 HOH A 53 553 74 HOH HOH . I 8 HOH A 54 554 76 HOH HOH . I 8 HOH A 55 555 185 HOH HOH . I 8 HOH A 56 556 207 HOH HOH . I 8 HOH A 57 557 181 HOH HOH . I 8 HOH A 58 558 119 HOH HOH . I 8 HOH A 59 559 224 HOH HOH . I 8 HOH A 60 560 8 HOH HOH . I 8 HOH A 61 561 223 HOH HOH . I 8 HOH A 62 562 178 HOH HOH . I 8 HOH A 63 563 104 HOH HOH . I 8 HOH A 64 564 201 HOH HOH . I 8 HOH A 65 565 51 HOH HOH . I 8 HOH A 66 566 205 HOH HOH . I 8 HOH A 67 567 18 HOH HOH . I 8 HOH A 68 568 227 HOH HOH . I 8 HOH A 69 569 33 HOH HOH . I 8 HOH A 70 570 88 HOH HOH . I 8 HOH A 71 571 188 HOH HOH . I 8 HOH A 72 572 82 HOH HOH . I 8 HOH A 73 573 73 HOH HOH . I 8 HOH A 74 574 141 HOH HOH . I 8 HOH A 75 575 29 HOH HOH . I 8 HOH A 76 576 37 HOH HOH . I 8 HOH A 77 577 60 HOH HOH . I 8 HOH A 78 578 47 HOH HOH . I 8 HOH A 79 579 212 HOH HOH . I 8 HOH A 80 580 202 HOH HOH . I 8 HOH A 81 581 22 HOH HOH . I 8 HOH A 82 582 38 HOH HOH . I 8 HOH A 83 583 162 HOH HOH . I 8 HOH A 84 584 113 HOH HOH . I 8 HOH A 85 585 23 HOH HOH . I 8 HOH A 86 586 89 HOH HOH . I 8 HOH A 87 587 222 HOH HOH . I 8 HOH A 88 588 153 HOH HOH . I 8 HOH A 89 589 79 HOH HOH . I 8 HOH A 90 590 124 HOH HOH . I 8 HOH A 91 591 65 HOH HOH . I 8 HOH A 92 592 180 HOH HOH . I 8 HOH A 93 593 198 HOH HOH . I 8 HOH A 94 594 206 HOH HOH . I 8 HOH A 95 595 35 HOH HOH . I 8 HOH A 96 596 210 HOH HOH . I 8 HOH A 97 597 53 HOH HOH . I 8 HOH A 98 598 17 HOH HOH . I 8 HOH A 99 599 61 HOH HOH . I 8 HOH A 100 600 225 HOH HOH . I 8 HOH A 101 601 193 HOH HOH . I 8 HOH A 102 602 19 HOH HOH . I 8 HOH A 103 603 190 HOH HOH . I 8 HOH A 104 604 16 HOH HOH . I 8 HOH A 105 605 183 HOH HOH . I 8 HOH A 106 606 204 HOH HOH . I 8 HOH A 107 607 197 HOH HOH . I 8 HOH A 108 608 21 HOH HOH . I 8 HOH A 109 609 220 HOH HOH . I 8 HOH A 110 610 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . D 4 -26.453 17.365 -13.303 1 34.75 ? PG ANP 403 A 1 HETATM 2 O O1G ANP . . . D 4 -25.826 17.992 -14.471 1 38.57 ? O1G ANP 403 A 1 HETATM 3 O O2G ANP . . . D 4 -27.568 16.403 -13.801 1 31.29 ? O2G ANP 403 A 1 HETATM 4 O O3G ANP . . . D 4 -27.078 18.416 -12.338 1 47.53 ? O3G ANP 403 A 1 HETATM 5 P PB ANP . . . D 4 -25.371 16.406 -10.912 1 30.63 ? PB ANP 403 A 1 HETATM 6 O O1B ANP . . . D 4 -26.624 17.021 -10.453 1 43.4 ? O1B ANP 403 A 1 HETATM 7 O O2B ANP . . . D 4 -25.191 14.984 -10.311 1 25.88 ? O2B ANP 403 A 1 HETATM 8 N N3B ANP . . . D 4 -25.305 16.4 -12.533 1 50.16 ? N3B ANP 403 A 1 HETATM 9 P PA ANP . . . D 4 -23.444 17.636 -9.001 1 23.22 ? PA ANP 403 A 1 HETATM 10 O O1A ANP . . . D 4 -23.833 16.641 -7.916 1 22.19 ? O1A ANP 403 A 1 HETATM 11 O O2A ANP . . . D 4 -23.847 19.047 -8.591 1 21.77 ? O2A ANP 403 A 1 HETATM 12 O O3A ANP . . . D 4 -24.151 17.307 -10.393 1 26.79 ? O3A ANP 403 A 1 HETATM 13 O O5' ANP . . . D 4 -21.869 17.587 -9.287 1 23.62 ? O5' ANP 403 A 1 HETATM 14 C C5' ANP . . . D 4 -21.259 16.492 -9.968 1 21.83 ? C5' ANP 403 A 1 HETATM 15 C C4' ANP . . . D 4 -19.775 16.821 -10.065 1 24.47 ? C4' ANP 403 A 1 HETATM 16 O O4' ANP . . . D 4 -19.238 16.918 -8.739 1 25.89 ? O4' ANP 403 A 1 HETATM 17 C C3' ANP . . . D 4 -19.018 15.684 -10.752 1 26.77 ? C3' ANP 403 A 1 HETATM 18 O O3' ANP . . . D 4 -18.997 15.927 -12.155 1 24.11 ? O3' ANP 403 A 1 HETATM 19 C C2' ANP . . . D 4 -17.61 15.831 -10.142 1 29.58 ? C2' ANP 403 A 1 HETATM 20 O O2' ANP . . . D 4 -16.828 16.758 -10.901 1 24.36 ? O2' ANP 403 A 1 HETATM 21 C C1' ANP . . . D 4 -17.913 16.416 -8.723 1 24.69 ? C1' ANP 403 A 1 HETATM 22 N N9 ANP . . . D 4 -17.869 15.432 -7.639 1 24.53 ? N9 ANP 403 A 1 HETATM 23 C C8 ANP . . . D 4 -17.621 15.745 -6.335 1 22.82 ? C8 ANP 403 A 1 HETATM 24 N N7 ANP . . . D 4 -17.675 14.647 -5.591 1 27.72 ? N7 ANP 403 A 1 HETATM 25 C C5 ANP . . . D 4 -17.969 13.605 -6.401 1 27.1 ? C5 ANP 403 A 1 HETATM 26 C C6 ANP . . . D 4 -18.147 12.231 -6.171 1 27.66 ? C6 ANP 403 A 1 HETATM 27 N N6 ANP . . . D 4 -18.022 11.71 -4.893 1 34.26 ? N6 ANP 403 A 1 HETATM 28 N N1 ANP . . . D 4 -18.436 11.44 -7.2 1 27.25 ? N1 ANP 403 A 1 HETATM 29 C C2 ANP . . . D 4 -18.546 11.974 -8.398 1 27.47 ? C2 ANP 403 A 1 HETATM 30 N N3 ANP . . . D 4 -18.393 13.24 -8.697 1 29.07 ? N3 ANP 403 A 1 HETATM 31 C C4 ANP . . . D 4 -18.105 14.082 -7.715 1 27.41 ? C4 ANP 403 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #