data_7UF0 # _model_server_result.job_id aPTbdfXHtA0c4kbWAQkdiQ _model_server_result.datetime_utc '2024-11-23 12:15:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7uf0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7UF0 # _exptl.entry_id 7UF0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 230.11 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RIBULOSE-5-PHOSPHATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7UF0 _cell.length_a 60.671 _cell.length_b 78.625 _cell.length_c 90.319 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UF0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 45.1595 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H11 O8 P' _chem_comp.formula_weight 230.11 _chem_comp.id 5RP _chem_comp.mon_nstd_flag . _chem_comp.name RIBULOSE-5-PHOSPHATE _chem_comp.type saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 5RP sing 1 n n C2 O1 5RP sing 2 n n C2 H21 5RP sing 3 n n C2 H22 5RP sing 4 n n C3 C5 5RP sing 5 n n C3 O4 5RP doub 6 n n C5 O13 5RP sing 7 n n C5 C6 5RP sing 8 n n C5 H5 5RP sing 9 n n O13 H13 5RP sing 10 n n C6 O14 5RP sing 11 n n C6 C7 5RP sing 12 n n C6 H6 5RP sing 13 n n O14 H14 5RP sing 14 n n C7 O8 5RP sing 15 n n C7 H71 5RP sing 16 n n C7 H72 5RP sing 17 n n O8 P9 5RP sing 18 n n P9 O12 5RP doub 19 n n P9 O11 5RP sing 20 n n P9 O10 5RP sing 21 n n O11 H11 5RP sing 22 n n O10 H10 5RP sing 23 n n O1 HO1 5RP sing 24 n n # _atom_sites.entry_id 7UF0 _atom_sites.fract_transf_matrix[1][1] 0.016482 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012719 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011072 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5RP A 1 301 1 5RP 5RP . C 3 HOH A 1 401 144 HOH HOH . C 3 HOH A 2 402 39 HOH HOH . C 3 HOH A 3 403 81 HOH HOH . C 3 HOH A 4 404 99 HOH HOH . C 3 HOH A 5 405 143 HOH HOH . C 3 HOH A 6 406 47 HOH HOH . C 3 HOH A 7 407 92 HOH HOH . C 3 HOH A 8 408 127 HOH HOH . C 3 HOH A 9 409 62 HOH HOH . C 3 HOH A 10 410 80 HOH HOH . C 3 HOH A 11 411 37 HOH HOH . C 3 HOH A 12 412 97 HOH HOH . C 3 HOH A 13 413 95 HOH HOH . C 3 HOH A 14 414 78 HOH HOH . C 3 HOH A 15 415 53 HOH HOH . C 3 HOH A 16 416 146 HOH HOH . C 3 HOH A 17 417 50 HOH HOH . C 3 HOH A 18 418 3 HOH HOH . C 3 HOH A 19 419 83 HOH HOH . C 3 HOH A 20 420 34 HOH HOH . C 3 HOH A 21 421 10 HOH HOH . C 3 HOH A 22 422 84 HOH HOH . C 3 HOH A 23 423 140 HOH HOH . C 3 HOH A 24 424 70 HOH HOH . C 3 HOH A 25 425 32 HOH HOH . C 3 HOH A 26 426 17 HOH HOH . C 3 HOH A 27 427 74 HOH HOH . C 3 HOH A 28 428 108 HOH HOH . C 3 HOH A 29 429 117 HOH HOH . C 3 HOH A 30 430 1 HOH HOH . C 3 HOH A 31 431 94 HOH HOH . C 3 HOH A 32 432 58 HOH HOH . C 3 HOH A 33 433 4 HOH HOH . C 3 HOH A 34 434 13 HOH HOH . C 3 HOH A 35 435 28 HOH HOH . C 3 HOH A 36 436 41 HOH HOH . C 3 HOH A 37 437 5 HOH HOH . C 3 HOH A 38 438 93 HOH HOH . C 3 HOH A 39 439 14 HOH HOH . C 3 HOH A 40 440 20 HOH HOH . C 3 HOH A 41 441 68 HOH HOH . C 3 HOH A 42 442 98 HOH HOH . C 3 HOH A 43 443 59 HOH HOH . C 3 HOH A 44 444 15 HOH HOH . C 3 HOH A 45 445 23 HOH HOH . C 3 HOH A 46 446 77 HOH HOH . C 3 HOH A 47 447 18 HOH HOH . C 3 HOH A 48 448 7 HOH HOH . C 3 HOH A 49 449 85 HOH HOH . C 3 HOH A 50 450 57 HOH HOH . C 3 HOH A 51 451 104 HOH HOH . C 3 HOH A 52 452 137 HOH HOH . C 3 HOH A 53 453 16 HOH HOH . C 3 HOH A 54 454 89 HOH HOH . C 3 HOH A 55 455 35 HOH HOH . C 3 HOH A 56 456 67 HOH HOH . C 3 HOH A 57 457 135 HOH HOH . C 3 HOH A 58 458 8 HOH HOH . C 3 HOH A 59 459 116 HOH HOH . C 3 HOH A 60 460 12 HOH HOH . C 3 HOH A 61 461 30 HOH HOH . C 3 HOH A 62 462 6 HOH HOH . C 3 HOH A 63 463 60 HOH HOH . C 3 HOH A 64 464 75 HOH HOH . C 3 HOH A 65 465 40 HOH HOH . C 3 HOH A 66 466 56 HOH HOH . C 3 HOH A 67 467 69 HOH HOH . C 3 HOH A 68 468 22 HOH HOH . C 3 HOH A 69 469 120 HOH HOH . C 3 HOH A 70 470 102 HOH HOH . C 3 HOH A 71 471 87 HOH HOH . C 3 HOH A 72 472 122 HOH HOH . C 3 HOH A 73 473 44 HOH HOH . C 3 HOH A 74 474 88 HOH HOH . C 3 HOH A 75 475 64 HOH HOH . C 3 HOH A 76 476 27 HOH HOH . C 3 HOH A 77 477 21 HOH HOH . C 3 HOH A 78 478 79 HOH HOH . C 3 HOH A 79 479 2 HOH HOH . C 3 HOH A 80 480 109 HOH HOH . C 3 HOH A 81 481 115 HOH HOH . C 3 HOH A 82 482 11 HOH HOH . C 3 HOH A 83 483 138 HOH HOH . C 3 HOH A 84 484 9 HOH HOH . C 3 HOH A 85 485 24 HOH HOH . C 3 HOH A 86 486 110 HOH HOH . C 3 HOH A 87 487 76 HOH HOH . C 3 HOH A 88 488 43 HOH HOH . C 3 HOH A 89 489 54 HOH HOH . C 3 HOH A 90 490 111 HOH HOH . C 3 HOH A 91 491 49 HOH HOH . C 3 HOH A 92 492 66 HOH HOH . C 3 HOH A 93 493 38 HOH HOH . C 3 HOH A 94 494 61 HOH HOH . C 3 HOH A 95 495 73 HOH HOH . C 3 HOH A 96 496 29 HOH HOH . C 3 HOH A 97 497 100 HOH HOH . C 3 HOH A 98 498 42 HOH HOH . C 3 HOH A 99 499 46 HOH HOH . C 3 HOH A 100 500 55 HOH HOH . C 3 HOH A 101 501 48 HOH HOH . C 3 HOH A 102 502 121 HOH HOH . C 3 HOH A 103 503 90 HOH HOH . C 3 HOH A 104 504 31 HOH HOH . C 3 HOH A 105 505 26 HOH HOH . C 3 HOH A 106 506 136 HOH HOH . C 3 HOH A 107 507 91 HOH HOH . C 3 HOH A 108 508 105 HOH HOH . C 3 HOH A 109 509 145 HOH HOH . C 3 HOH A 110 510 132 HOH HOH . C 3 HOH A 111 511 25 HOH HOH . C 3 HOH A 112 512 133 HOH HOH . C 3 HOH A 113 513 142 HOH HOH . C 3 HOH A 114 514 125 HOH HOH . C 3 HOH A 115 515 51 HOH HOH . C 3 HOH A 116 516 63 HOH HOH . C 3 HOH A 117 517 45 HOH HOH . C 3 HOH A 118 518 71 HOH HOH . C 3 HOH A 119 519 131 HOH HOH . C 3 HOH A 120 520 134 HOH HOH . C 3 HOH A 121 521 107 HOH HOH . C 3 HOH A 122 522 118 HOH HOH . C 3 HOH A 123 523 86 HOH HOH . C 3 HOH A 124 524 141 HOH HOH . C 3 HOH A 125 525 126 HOH HOH . C 3 HOH A 126 526 96 HOH HOH . C 3 HOH A 127 527 128 HOH HOH . C 3 HOH A 128 528 19 HOH HOH . C 3 HOH A 129 529 65 HOH HOH . C 3 HOH A 130 530 119 HOH HOH . C 3 HOH A 131 531 113 HOH HOH . C 3 HOH A 132 532 130 HOH HOH . C 3 HOH A 133 533 123 HOH HOH . C 3 HOH A 134 534 114 HOH HOH . C 3 HOH A 135 535 139 HOH HOH . C 3 HOH A 136 536 112 HOH HOH . C 3 HOH A 137 537 36 HOH HOH . C 3 HOH A 138 538 72 HOH HOH . C 3 HOH A 139 539 106 HOH HOH . C 3 HOH A 140 540 52 HOH HOH . C 3 HOH A 141 541 147 HOH HOH . C 3 HOH A 142 542 101 HOH HOH . C 3 HOH A 143 543 148 HOH HOH . C 3 HOH A 144 544 103 HOH HOH . C 3 HOH A 145 545 33 HOH HOH . C 3 HOH A 146 546 129 HOH HOH . C 3 HOH A 147 547 82 HOH HOH . C 3 HOH A 148 548 124 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 5RP . . . B 2 -4.272 -6.182 14.99 1 23.57 ? C2 5RP 301 A 1 HETATM 2 C C3 5RP . . . B 2 -3.794 -6.062 13.553 1 24.4 ? C3 5RP 301 A 1 HETATM 3 C C5 5RP . . . B 2 -4.479 -6.844 12.438 1 20.29 ? C5 5RP 301 A 1 HETATM 4 O O13 5RP . . . B 2 -4 -6.36 11.22 1 31.85 ? O13 5RP 301 A 1 HETATM 5 C C6 5RP . . . B 2 -5.996 -6.653 12.602 1 22.97 ? C6 5RP 301 A 1 HETATM 6 O O14 5RP . . . B 2 -6.56 -7.614 11.716 1 25.95 ? O14 5RP 301 A 1 HETATM 7 C C7 5RP . . . B 2 -6.627 -5.278 12.384 1 25.75 ? C7 5RP 301 A 1 HETATM 8 O O8 5RP . . . B 2 -6.103 -4.587 11.327 1 21.94 ? O8 5RP 301 A 1 HETATM 9 P P9 5RP . . . B 2 -6.992 -4.302 9.988 1 20.87 ? P9 5RP 301 A 1 HETATM 10 O O12 5RP . . . B 2 -7.101 -5.51 9.083 1 22.38 -1 O12 5RP 301 A 1 HETATM 11 O O11 5RP . . . B 2 -6.117 -3.245 9.327 1 21.73 ? O11 5RP 301 A 1 HETATM 12 O O10 5RP . . . B 2 -8.326 -3.694 10.315 1 17.22 -1 O10 5RP 301 A 1 HETATM 13 O O4 5RP . . . B 2 -2.893 -5.33 13.292 1 25.21 ? O4 5RP 301 A 1 HETATM 14 O O1 5RP . . . B 2 -3.188 -5.968 15.845 1 25.32 ? O1 5RP 301 A 1 HETATM 15 H H21 5RP . . . B 2 -5.039 -5.442 15.182 1 28.28 ? H21 5RP 301 A 1 HETATM 16 H H22 5RP . . . B 2 -4.672 -7.174 15.159 1 28.28 ? H22 5RP 301 A 1 HETATM 17 H H5 5RP . . . B 2 -4.235 -7.895 12.531 1 24.34 ? H5 5RP 301 A 1 HETATM 18 H H13 5RP . . . B 2 -3.158 -6.744 11.038 1 38.22 ? H13 5RP 301 A 1 HETATM 19 H H6 5RP . . . B 2 -6.259 -6.967 13.598 1 27.56 ? H6 5RP 301 A 1 HETATM 20 H H14 5RP . . . B 2 -6.366 -8.482 12.029 1 31.14 ? H14 5RP 301 A 1 HETATM 21 H H71 5RP . . . B 2 -7.689 -5.409 12.217 1 30.9 ? H71 5RP 301 A 1 HETATM 22 H H72 5RP . . . B 2 -6.489 -4.689 13.283 1 30.9 ? H72 5RP 301 A 1 HETATM 23 H HO1 5RP . . . B 2 -2.651 -6.743 15.871 1 30.38 ? HO1 5RP 301 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #