data_7UF1 # _model_server_result.job_id UbJVucwmwDIaeawzj8XGYA _model_server_result.datetime_utc '2024-11-23 09:06:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7uf1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 7UF1 # _exptl.entry_id 7UF1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 230.11 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RIBOSE-5-PHOSPHATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7UF1 _cell.length_a 60.251 _cell.length_b 78.583 _cell.length_c 89.933 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UF1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 44.9665 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 39 A GLU 39 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.933 ? metalc ? metalc2 A ND1 HIS 154 A HIS 154 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc3 B MN MN . A MN 301 1_555 C O3 R5P . A R5P 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc4 B MN MN . A MN 301 1_555 C O1P R5P . A R5P 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? metalc ? metalc5 B MN MN . A MN 301 1_555 C O4 R5P . A R5P 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc6 B MN MN . A MN 301 1_555 D O HOH . A HOH 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? # _chem_comp.formula 'C5 H11 O8 P' _chem_comp.formula_weight 230.11 _chem_comp.id R5P _chem_comp.mon_nstd_flag . _chem_comp.name RIBOSE-5-PHOSPHATE _chem_comp.type saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 R5P doub 277 n n C1 C2 R5P sing 278 n n C2 O2 R5P sing 279 n n C2 C3 R5P sing 280 n n C3 O3 R5P sing 281 n n C3 C4 R5P sing 282 n n C4 O4 R5P sing 283 n n C4 C5 R5P sing 284 n n C5 O5 R5P sing 285 n n O5 P R5P sing 286 n n P O1P R5P doub 287 n n P O2P R5P sing 288 n n P O3P R5P sing 289 n n C1 H11 R5P sing 290 n n C2 HC2 R5P sing 291 n n O2 HO2 R5P sing 292 n n C3 HC3 R5P sing 293 n n O3 HO3 R5P sing 294 n n C4 HC4 R5P sing 295 n n O4 HO4 R5P sing 296 n n C5 H51 R5P sing 297 n n C5 H52 R5P sing 298 n n O2P HOP2 R5P sing 299 n n O3P HOP3 R5P sing 300 n n # _atom_sites.entry_id 7UF1 _atom_sites.fract_transf_matrix[1][1] 0.016597 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012725 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011119 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 301 1 MN MN . C 3 R5P A 1 302 1 R5P R5P . D 4 HOH A 1 401 5 HOH HOH . D 4 HOH A 2 402 34 HOH HOH . D 4 HOH A 3 403 6 HOH HOH . D 4 HOH A 4 404 3 HOH HOH . D 4 HOH A 5 405 1 HOH HOH . D 4 HOH A 6 406 43 HOH HOH . D 4 HOH A 7 407 54 HOH HOH . D 4 HOH A 8 408 39 HOH HOH . D 4 HOH A 9 409 24 HOH HOH . D 4 HOH A 10 410 7 HOH HOH . D 4 HOH A 11 411 4 HOH HOH . D 4 HOH A 12 412 9 HOH HOH . D 4 HOH A 13 413 17 HOH HOH . D 4 HOH A 14 414 31 HOH HOH . D 4 HOH A 15 415 28 HOH HOH . D 4 HOH A 16 416 45 HOH HOH . D 4 HOH A 17 417 2 HOH HOH . D 4 HOH A 18 418 18 HOH HOH . D 4 HOH A 19 419 62 HOH HOH . D 4 HOH A 20 420 16 HOH HOH . D 4 HOH A 21 421 13 HOH HOH . D 4 HOH A 22 422 8 HOH HOH . D 4 HOH A 23 423 59 HOH HOH . D 4 HOH A 24 424 27 HOH HOH . D 4 HOH A 25 425 51 HOH HOH . D 4 HOH A 26 426 25 HOH HOH . D 4 HOH A 27 427 14 HOH HOH . D 4 HOH A 28 428 15 HOH HOH . D 4 HOH A 29 429 55 HOH HOH . D 4 HOH A 30 430 10 HOH HOH . D 4 HOH A 31 431 50 HOH HOH . D 4 HOH A 32 432 11 HOH HOH . D 4 HOH A 33 433 19 HOH HOH . D 4 HOH A 34 434 38 HOH HOH . D 4 HOH A 35 435 46 HOH HOH . D 4 HOH A 36 436 29 HOH HOH . D 4 HOH A 37 437 20 HOH HOH . D 4 HOH A 38 438 21 HOH HOH . D 4 HOH A 39 439 12 HOH HOH . D 4 HOH A 40 440 30 HOH HOH . D 4 HOH A 41 441 49 HOH HOH . D 4 HOH A 42 442 53 HOH HOH . D 4 HOH A 43 443 41 HOH HOH . D 4 HOH A 44 444 23 HOH HOH . D 4 HOH A 45 445 60 HOH HOH . D 4 HOH A 46 446 26 HOH HOH . D 4 HOH A 47 447 47 HOH HOH . D 4 HOH A 48 448 52 HOH HOH . D 4 HOH A 49 449 48 HOH HOH . D 4 HOH A 50 450 44 HOH HOH . D 4 HOH A 51 451 22 HOH HOH . D 4 HOH A 52 452 32 HOH HOH . D 4 HOH A 53 453 33 HOH HOH . D 4 HOH A 54 454 67 HOH HOH . D 4 HOH A 55 455 58 HOH HOH . D 4 HOH A 56 456 65 HOH HOH . D 4 HOH A 57 457 61 HOH HOH . D 4 HOH A 58 458 66 HOH HOH . D 4 HOH A 59 459 42 HOH HOH . D 4 HOH A 60 460 63 HOH HOH . D 4 HOH A 61 461 56 HOH HOH . D 4 HOH A 62 462 35 HOH HOH . D 4 HOH A 63 463 37 HOH HOH . D 4 HOH A 64 464 64 HOH HOH . D 4 HOH A 65 465 57 HOH HOH . D 4 HOH A 66 466 36 HOH HOH . D 4 HOH A 67 467 68 HOH HOH . D 4 HOH A 68 468 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 R5P . . . C 3 -4.008 -5.883 15.019 1 39.34 ? C1 R5P 302 A 1 HETATM 2 O O1 R5P . . . C 3 -3.226 -5.864 15.913 1 40.3 ? O1 R5P 302 A 1 HETATM 3 C C2 R5P . . . C 3 -3.482 -6.099 13.603 1 36.34 ? C2 R5P 302 A 1 HETATM 4 O O2 R5P . . . C 3 -3.125 -4.863 13.071 1 46.03 ? O2 R5P 302 A 1 HETATM 5 C C3 R5P . . . C 3 -4.426 -6.761 12.593 1 44.26 ? C3 R5P 302 A 1 HETATM 6 O O3 R5P . . . C 3 -3.98 -6.372 11.307 1 51.04 ? O3 R5P 302 A 1 HETATM 7 C C4 R5P . . . C 3 -5.907 -6.474 12.888 1 47.58 ? C4 R5P 302 A 1 HETATM 8 O O4 R5P . . . C 3 -6.621 -7.47 12.177 1 42.68 ? O4 R5P 302 A 1 HETATM 9 C C5 R5P . . . C 3 -6.54 -5.14 12.515 1 36.38 ? C5 R5P 302 A 1 HETATM 10 O O5 R5P . . . C 3 -6.05 -4.648 11.324 1 37.26 ? O5 R5P 302 A 1 HETATM 11 P P R5P . . . C 3 -7.047 -4.239 10.085 1 35.69 ? P R5P 302 A 1 HETATM 12 O O1P R5P . . . C 3 -7.193 -5.468 9.171 1 40.3 -1 O1P R5P 302 A 1 HETATM 13 O O2P R5P . . . C 3 -8.425 -3.658 10.404 1 26.7 ? O2P R5P 302 A 1 HETATM 14 O O3P R5P . . . C 3 -6.275 -3.159 9.334 1 41.05 -1 O3P R5P 302 A 1 HETATM 15 H H11 R5P . . . C 3 -5.052 -5.701 15.238 1 47.22 ? H11 R5P 302 A 1 HETATM 16 H HC2 R5P . . . C 3 -2.588 -6.704 13.664 1 43.62 ? HC2 R5P 302 A 1 HETATM 17 H HO2 R5P . . . C 3 -3.064 -4.931 12.131 1 55.25 ? HO2 R5P 302 A 1 HETATM 18 H HC3 R5P . . . C 3 -4.286 -7.832 12.673 1 53.13 ? HC3 R5P 302 A 1 HETATM 19 H HO3 R5P . . . C 3 -3.172 -6.817 11.106 1 61.26 ? HO3 R5P 302 A 1 HETATM 20 H HC4 R5P . . . C 3 -6.11 -6.669 13.922 1 57.1 ? HC4 R5P 302 A 1 HETATM 21 H HO4 R5P . . . C 3 -6.839 -7.146 11.318 1 51.22 ? HO4 R5P 302 A 1 HETATM 22 H H51 R5P . . . C 3 -6.342 -4.42 13.302 1 43.67 ? H51 R5P 302 A 1 HETATM 23 H H52 R5P . . . C 3 -7.613 -5.274 12.424 1 43.67 ? H52 R5P 302 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #