data_7UF2
#
_model_server_result.job_id            RSxNi22gniweZJDWPV-4Pg 
_model_server_result.datetime_utc      '2024-11-23 11:46:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7uf2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    7UF2 
#
_exptl.entry_id    7UF2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7UF2 
_cell.length_a            61.029 
_cell.length_b            79.106 
_cell.length_c            91.34 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7UF2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    'C 2c 2' 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 45.67 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 39 A GLU 39 1_555 C MN MN . A MN 302 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.211 ? 
metalc ? metalc2 A OE1 GLU 39 A GLU 39 1_555 C MN MN . A MN 302 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.064 ? 
metalc ? metalc3 A ND1 HIS 154 A HIS 154 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? 
metalc ? metalc4 B O10 5SP . A 5SP 301 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.792 ? 
metalc ? metalc5 B O14 5SP . A 5SP 301 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? 
metalc ? metalc6 C MN MN . A MN 302 1_555 F O HOH . A HOH 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 107 n n 
C1 C2 EDO sing 108 n n 
C1 H11 EDO sing 109 n n 
C1 H12 EDO sing 110 n n 
O1 HO1 EDO sing 111 n n 
C2 O2 EDO sing 112 n n 
C2 H21 EDO sing 113 n n 
C2 H22 EDO sing 114 n n 
O2 HO2 EDO sing 115 n n 
#
_atom_sites.entry_id                     7UF2 
_atom_sites.fract_transf_matrix[1][1]    0.016386 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012641 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010948 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 5SP A 1 301 1 5SP LIG . 
C 3 MN A 1 302 2 MN MN . 
D 4 EDO A 1 303 1 EDO EDO . 
E 4 EDO A 1 304 3 EDO EDO . 
F 5 HOH A 1 401 71 HOH HOH . 
F 5 HOH A 2 402 6 HOH HOH . 
F 5 HOH A 3 403 101 HOH HOH . 
F 5 HOH A 4 404 90 HOH HOH . 
F 5 HOH A 5 405 68 HOH HOH . 
F 5 HOH A 6 406 28 HOH HOH . 
F 5 HOH A 7 407 66 HOH HOH . 
F 5 HOH A 8 408 24 HOH HOH . 
F 5 HOH A 9 409 27 HOH HOH . 
F 5 HOH A 10 410 5 HOH HOH . 
F 5 HOH A 11 411 52 HOH HOH . 
F 5 HOH A 12 412 91 HOH HOH . 
F 5 HOH A 13 413 33 HOH HOH . 
F 5 HOH A 14 414 10 HOH HOH . 
F 5 HOH A 15 415 54 HOH HOH . 
F 5 HOH A 16 416 4 HOH HOH . 
F 5 HOH A 17 417 7 HOH HOH . 
F 5 HOH A 18 418 9 HOH HOH . 
F 5 HOH A 19 419 63 HOH HOH . 
F 5 HOH A 20 420 8 HOH HOH . 
F 5 HOH A 21 421 25 HOH HOH . 
F 5 HOH A 22 422 55 HOH HOH . 
F 5 HOH A 23 423 43 HOH HOH . 
F 5 HOH A 24 424 23 HOH HOH . 
F 5 HOH A 25 425 72 HOH HOH . 
F 5 HOH A 26 426 53 HOH HOH . 
F 5 HOH A 27 427 41 HOH HOH . 
F 5 HOH A 28 428 51 HOH HOH . 
F 5 HOH A 29 429 20 HOH HOH . 
F 5 HOH A 30 430 18 HOH HOH . 
F 5 HOH A 31 431 1 HOH HOH . 
F 5 HOH A 32 432 78 HOH HOH . 
F 5 HOH A 33 433 26 HOH HOH . 
F 5 HOH A 34 434 16 HOH HOH . 
F 5 HOH A 35 435 2 HOH HOH . 
F 5 HOH A 36 436 93 HOH HOH . 
F 5 HOH A 37 437 35 HOH HOH . 
F 5 HOH A 38 438 77 HOH HOH . 
F 5 HOH A 39 439 67 HOH HOH . 
F 5 HOH A 40 440 14 HOH HOH . 
F 5 HOH A 41 441 84 HOH HOH . 
F 5 HOH A 42 442 39 HOH HOH . 
F 5 HOH A 43 443 11 HOH HOH . 
F 5 HOH A 44 444 76 HOH HOH . 
F 5 HOH A 45 445 73 HOH HOH . 
F 5 HOH A 46 446 12 HOH HOH . 
F 5 HOH A 47 447 49 HOH HOH . 
F 5 HOH A 48 448 21 HOH HOH . 
F 5 HOH A 49 449 22 HOH HOH . 
F 5 HOH A 50 450 19 HOH HOH . 
F 5 HOH A 51 451 32 HOH HOH . 
F 5 HOH A 52 452 17 HOH HOH . 
F 5 HOH A 53 453 31 HOH HOH . 
F 5 HOH A 54 454 102 HOH HOH . 
F 5 HOH A 55 455 15 HOH HOH . 
F 5 HOH A 56 456 61 HOH HOH . 
F 5 HOH A 57 457 3 HOH HOH . 
F 5 HOH A 58 458 99 HOH HOH . 
F 5 HOH A 59 459 44 HOH HOH . 
F 5 HOH A 60 460 48 HOH HOH . 
F 5 HOH A 61 461 45 HOH HOH . 
F 5 HOH A 62 462 42 HOH HOH . 
F 5 HOH A 63 463 46 HOH HOH . 
F 5 HOH A 64 464 98 HOH HOH . 
F 5 HOH A 65 465 34 HOH HOH . 
F 5 HOH A 66 466 97 HOH HOH . 
F 5 HOH A 67 467 87 HOH HOH . 
F 5 HOH A 68 468 92 HOH HOH . 
F 5 HOH A 69 469 79 HOH HOH . 
F 5 HOH A 70 470 59 HOH HOH . 
F 5 HOH A 71 471 50 HOH HOH . 
F 5 HOH A 72 472 74 HOH HOH . 
F 5 HOH A 73 473 29 HOH HOH . 
F 5 HOH A 74 474 80 HOH HOH . 
F 5 HOH A 75 475 89 HOH HOH . 
F 5 HOH A 76 476 38 HOH HOH . 
F 5 HOH A 77 477 40 HOH HOH . 
F 5 HOH A 78 478 58 HOH HOH . 
F 5 HOH A 79 479 13 HOH HOH . 
F 5 HOH A 80 480 85 HOH HOH . 
F 5 HOH A 81 481 65 HOH HOH . 
F 5 HOH A 82 482 37 HOH HOH . 
F 5 HOH A 83 483 30 HOH HOH . 
F 5 HOH A 84 484 104 HOH HOH . 
F 5 HOH A 85 485 75 HOH HOH . 
F 5 HOH A 86 486 64 HOH HOH . 
F 5 HOH A 87 487 94 HOH HOH . 
F 5 HOH A 88 488 88 HOH HOH . 
F 5 HOH A 89 489 60 HOH HOH . 
F 5 HOH A 90 490 70 HOH HOH . 
F 5 HOH A 91 491 81 HOH HOH . 
F 5 HOH A 92 492 100 HOH HOH . 
F 5 HOH A 93 493 62 HOH HOH . 
F 5 HOH A 94 494 95 HOH HOH . 
F 5 HOH A 95 495 103 HOH HOH . 
F 5 HOH A 96 496 83 HOH HOH . 
F 5 HOH A 97 497 106 HOH HOH . 
F 5 HOH A 98 498 82 HOH HOH . 
F 5 HOH A 99 499 47 HOH HOH . 
F 5 HOH A 100 500 36 HOH HOH . 
F 5 HOH A 101 501 56 HOH HOH . 
F 5 HOH A 102 502 69 HOH HOH . 
F 5 HOH A 103 503 57 HOH HOH . 
F 5 HOH A 104 504 96 HOH HOH . 
F 5 HOH A 105 505 86 HOH HOH . 
F 5 HOH A 106 506 105 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 4 -21.192 -1.111 22.032 1 47.15 ? C1 EDO 303 A 1 
HETATM 2 O O1 EDO . . . D 4 -19.998 -0.335 22.217 1 48.41 ? O1 EDO 303 A 1 
HETATM 3 C C2 EDO . . . D 4 -22.358 -0.184 22.355 1 50.32 ? C2 EDO 303 A 1 
HETATM 4 O O2 EDO . . . D 4 -21.94 1.094 21.846 1 50.75 ? O2 EDO 303 A 1 
HETATM 5 H H11 EDO . . . D 4 -21.26 -1.465 21.001 1 56.56 ? H11 EDO 303 A 1 
HETATM 6 H H12 EDO . . . D 4 -21.194 -1.973 22.702 1 56.56 ? H12 EDO 303 A 1 
HETATM 7 H HO1 EDO . . . D 4 -19.225 -0.882 22.023 1 58.08 ? HO1 EDO 303 A 1 
HETATM 8 H H21 EDO . . . D 4 -23.258 -0.503 21.831 1 60.36 ? H21 EDO 303 A 1 
HETATM 9 H H22 EDO . . . D 4 -22.548 -0.142 23.43 1 60.36 ? H22 EDO 303 A 1 
HETATM 10 H HO2 EDO . . . D 4 -22.632 1.749 22.012 1 60.88 ? HO2 EDO 303 A 1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           10 
#