data_7UF4 # _model_server_result.job_id szeOnwBykJq280eCov7FTg _model_server_result.datetime_utc '2024-11-23 12:18:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7uf4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 7UF4 # _exptl.entry_id 7UF4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 230.11 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RIBULOSE-5-PHOSPHATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7UF4 _cell.length_a 60.337 _cell.length_b 78.558 _cell.length_c 90.535 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UF4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 45.2675 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 39 A GLU 39 1_555 D MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc2 A ND1 HIS 154 A HIS 154 1_555 D MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc3 B O05 N46 . A N46 301 1_555 D MN MN . A MN 303 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc4 C O13 5RP . A 5RP 302 1_555 D MN MN . A MN 303 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc5 C O14 5RP . A 5RP 302 1_555 D MN MN . A MN 303 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc6 D MN MN . A MN 303 1_555 I O HOH . A HOH 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? # _chem_comp.formula 'C5 H11 O8 P' _chem_comp.formula_weight 230.11 _chem_comp.id 5RP _chem_comp.mon_nstd_flag . _chem_comp.name RIBULOSE-5-PHOSPHATE _chem_comp.type saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 5RP sing 1 n n C2 O1 5RP sing 2 n n C2 H21 5RP sing 3 n n C2 H22 5RP sing 4 n n C3 C5 5RP sing 5 n n C3 O4 5RP doub 6 n n C5 O13 5RP sing 7 n n C5 C6 5RP sing 8 n n C5 H5 5RP sing 9 n n O13 H13 5RP sing 10 n n C6 O14 5RP sing 11 n n C6 C7 5RP sing 12 n n C6 H6 5RP sing 13 n n O14 H14 5RP sing 14 n n C7 O8 5RP sing 15 n n C7 H71 5RP sing 16 n n C7 H72 5RP sing 17 n n O8 P9 5RP sing 18 n n P9 O12 5RP doub 19 n n P9 O11 5RP sing 20 n n P9 O10 5RP sing 21 n n O11 H11 5RP sing 22 n n O10 H10 5RP sing 23 n n O1 HO1 5RP sing 24 n n # _atom_sites.entry_id 7UF4 _atom_sites.fract_transf_matrix[1][1] 0.016574 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012729 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011045 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 N46 A 1 301 1 N46 LIG . C 3 5RP A 1 302 1 5RP 5RP . D 4 MN A 1 303 1 MN MN . E 4 MN A 1 304 2 MN MN . F 5 EDO A 1 305 1 EDO EDO . G 5 EDO A 1 306 2 EDO EDO . H 5 EDO A 1 307 3 EDO EDO . I 6 HOH A 1 401 51 HOH HOH . I 6 HOH A 2 402 12 HOH HOH . I 6 HOH A 3 403 20 HOH HOH . I 6 HOH A 4 404 34 HOH HOH . I 6 HOH A 5 405 16 HOH HOH . I 6 HOH A 6 406 6 HOH HOH . I 6 HOH A 7 407 44 HOH HOH . I 6 HOH A 8 408 10 HOH HOH . I 6 HOH A 9 409 8 HOH HOH . I 6 HOH A 10 410 3 HOH HOH . I 6 HOH A 11 411 7 HOH HOH . I 6 HOH A 12 412 52 HOH HOH . I 6 HOH A 13 413 11 HOH HOH . I 6 HOH A 14 414 31 HOH HOH . I 6 HOH A 15 415 14 HOH HOH . I 6 HOH A 16 416 25 HOH HOH . I 6 HOH A 17 417 13 HOH HOH . I 6 HOH A 18 418 40 HOH HOH . I 6 HOH A 19 419 19 HOH HOH . I 6 HOH A 20 420 1 HOH HOH . I 6 HOH A 21 421 4 HOH HOH . I 6 HOH A 22 422 5 HOH HOH . I 6 HOH A 23 423 18 HOH HOH . I 6 HOH A 24 424 2 HOH HOH . I 6 HOH A 25 425 22 HOH HOH . I 6 HOH A 26 426 23 HOH HOH . I 6 HOH A 27 427 36 HOH HOH . I 6 HOH A 28 428 35 HOH HOH . I 6 HOH A 29 429 17 HOH HOH . I 6 HOH A 30 430 15 HOH HOH . I 6 HOH A 31 431 46 HOH HOH . I 6 HOH A 32 432 38 HOH HOH . I 6 HOH A 33 433 27 HOH HOH . I 6 HOH A 34 434 28 HOH HOH . I 6 HOH A 35 435 50 HOH HOH . I 6 HOH A 36 436 24 HOH HOH . I 6 HOH A 37 437 9 HOH HOH . I 6 HOH A 38 438 37 HOH HOH . I 6 HOH A 39 439 30 HOH HOH . I 6 HOH A 40 440 26 HOH HOH . I 6 HOH A 41 441 33 HOH HOH . I 6 HOH A 42 442 21 HOH HOH . I 6 HOH A 43 443 29 HOH HOH . I 6 HOH A 44 444 43 HOH HOH . I 6 HOH A 45 445 32 HOH HOH . I 6 HOH A 46 446 45 HOH HOH . I 6 HOH A 47 447 49 HOH HOH . I 6 HOH A 48 448 39 HOH HOH . I 6 HOH A 49 449 42 HOH HOH . I 6 HOH A 50 450 47 HOH HOH . I 6 HOH A 51 451 48 HOH HOH . I 6 HOH A 52 452 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 5RP . B . C 3 -4.191 -5.933 15.166 0.8 30.97 ? C2 5RP 302 A 1 HETATM 2 C C3 5RP . B . C 3 -3.717 -6.034 13.717 0.8 33.72 ? C3 5RP 302 A 1 HETATM 3 C C5 5RP . B . C 3 -4.433 -7.001 12.761 0.8 36.8 ? C5 5RP 302 A 1 HETATM 4 O O13 5RP . B . C 3 -3.768 -6.919 11.509 0.8 35.29 ? O13 5RP 302 A 1 HETATM 5 C C6 5RP . B . C 3 -5.878 -6.513 12.618 0.8 36.49 ? C6 5RP 302 A 1 HETATM 6 O O14 5RP . B . C 3 -6.57 -7.34 11.76 0.8 32.63 ? O14 5RP 302 A 1 HETATM 7 C C7 5RP . B . C 3 -5.621 -5.091 12.096 0.8 36.89 ? C7 5RP 302 A 1 HETATM 8 O O8 5RP . B . C 3 -6.802 -4.542 11.676 0.8 33.76 ? O8 5RP 302 A 1 HETATM 9 P P9 5RP . B . C 3 -7.072 -4.181 10.087 0.8 27.13 ? P9 5RP 302 A 1 HETATM 10 O O12 5RP . B . C 3 -7.179 -5.43 9.243 0.8 34.17 ? O12 5RP 302 A 1 HETATM 11 O O11 5RP . B . C 3 -6.035 -3.192 9.541 0.8 37.15 ? O11 5RP 302 A 1 HETATM 12 O O10 5RP . B . C 3 -8.443 -3.549 10.174 0.8 25.46 ? O10 5RP 302 A 1 HETATM 13 O O4 5RP . B . C 3 -2.842 -5.331 13.308 0.8 34.76 ? O4 5RP 302 A 1 HETATM 14 O O1 5RP . B . C 3 -3.107 -5.551 15.965 0.8 28.78 ? O1 5RP 302 A 1 HETATM 15 H H21 5RP . B . C 3 -4.566 -6.894 15.495 0.8 37.16 ? H21 5RP 302 A 1 HETATM 16 H H22 5RP . B . C 3 -4.978 -5.193 15.242 0.8 37.16 ? H22 5RP 302 A 1 HETATM 17 H H5 5RP . B . C 3 -4.425 -8.023 13.119 0.8 44.17 ? H5 5RP 302 A 1 HETATM 18 H H13 5RP . B . C 3 -2.902 -6.554 11.625 0.8 42.35 ? H13 5RP 302 A 1 HETATM 19 H H6 5RP . B . C 3 -6.499 -6.52 13.505 0.8 43.79 ? H6 5RP 302 A 1 HETATM 20 H H14 5RP . B . C 3 -6.76 -6.866 10.968 0.8 39.15 ? H14 5RP 302 A 1 HETATM 21 H H71 5RP . B . C 3 -4.925 -5.13 11.267 0.8 44.26 ? H71 5RP 302 A 1 HETATM 22 H H72 5RP . B . C 3 -5.202 -4.484 12.89 0.8 44.26 ? H72 5RP 302 A 1 HETATM 23 H HO1 5RP . B . C 3 -2.636 -6.313 16.243 0.8 34.54 ? HO1 5RP 302 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 226 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #