data_7UF4 # _model_server_result.job_id 4kU_a64EXc8KgNcmgvgwZQ _model_server_result.datetime_utc '2024-11-23 12:48:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7uf4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":306}' # _entry.id 7UF4 # _exptl.entry_id 7UF4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7UF4 _cell.length_a 60.337 _cell.length_b 78.558 _cell.length_c 90.535 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UF4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 45.2675 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 39 A GLU 39 1_555 D MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc2 A ND1 HIS 154 A HIS 154 1_555 D MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc3 B O05 N46 . A N46 301 1_555 D MN MN . A MN 303 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc4 C O13 5RP . A 5RP 302 1_555 D MN MN . A MN 303 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc5 C O14 5RP . A 5RP 302 1_555 D MN MN . A MN 303 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc6 D MN MN . A MN 303 1_555 I O HOH . A HOH 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 107 n n C1 C2 EDO sing 108 n n C1 H11 EDO sing 109 n n C1 H12 EDO sing 110 n n O1 HO1 EDO sing 111 n n C2 O2 EDO sing 112 n n C2 H21 EDO sing 113 n n C2 H22 EDO sing 114 n n O2 HO2 EDO sing 115 n n # _atom_sites.entry_id 7UF4 _atom_sites.fract_transf_matrix[1][1] 0.016574 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012729 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011045 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 N46 A 1 301 1 N46 LIG . C 3 5RP A 1 302 1 5RP 5RP . D 4 MN A 1 303 1 MN MN . E 4 MN A 1 304 2 MN MN . F 5 EDO A 1 305 1 EDO EDO . G 5 EDO A 1 306 2 EDO EDO . H 5 EDO A 1 307 3 EDO EDO . I 6 HOH A 1 401 51 HOH HOH . I 6 HOH A 2 402 12 HOH HOH . I 6 HOH A 3 403 20 HOH HOH . I 6 HOH A 4 404 34 HOH HOH . I 6 HOH A 5 405 16 HOH HOH . I 6 HOH A 6 406 6 HOH HOH . I 6 HOH A 7 407 44 HOH HOH . I 6 HOH A 8 408 10 HOH HOH . I 6 HOH A 9 409 8 HOH HOH . I 6 HOH A 10 410 3 HOH HOH . I 6 HOH A 11 411 7 HOH HOH . I 6 HOH A 12 412 52 HOH HOH . I 6 HOH A 13 413 11 HOH HOH . I 6 HOH A 14 414 31 HOH HOH . I 6 HOH A 15 415 14 HOH HOH . I 6 HOH A 16 416 25 HOH HOH . I 6 HOH A 17 417 13 HOH HOH . I 6 HOH A 18 418 40 HOH HOH . I 6 HOH A 19 419 19 HOH HOH . I 6 HOH A 20 420 1 HOH HOH . I 6 HOH A 21 421 4 HOH HOH . I 6 HOH A 22 422 5 HOH HOH . I 6 HOH A 23 423 18 HOH HOH . I 6 HOH A 24 424 2 HOH HOH . I 6 HOH A 25 425 22 HOH HOH . I 6 HOH A 26 426 23 HOH HOH . I 6 HOH A 27 427 36 HOH HOH . I 6 HOH A 28 428 35 HOH HOH . I 6 HOH A 29 429 17 HOH HOH . I 6 HOH A 30 430 15 HOH HOH . I 6 HOH A 31 431 46 HOH HOH . I 6 HOH A 32 432 38 HOH HOH . I 6 HOH A 33 433 27 HOH HOH . I 6 HOH A 34 434 28 HOH HOH . I 6 HOH A 35 435 50 HOH HOH . I 6 HOH A 36 436 24 HOH HOH . I 6 HOH A 37 437 9 HOH HOH . I 6 HOH A 38 438 37 HOH HOH . I 6 HOH A 39 439 30 HOH HOH . I 6 HOH A 40 440 26 HOH HOH . I 6 HOH A 41 441 33 HOH HOH . I 6 HOH A 42 442 21 HOH HOH . I 6 HOH A 43 443 29 HOH HOH . I 6 HOH A 44 444 43 HOH HOH . I 6 HOH A 45 445 32 HOH HOH . I 6 HOH A 46 446 45 HOH HOH . I 6 HOH A 47 447 49 HOH HOH . I 6 HOH A 48 448 39 HOH HOH . I 6 HOH A 49 449 42 HOH HOH . I 6 HOH A 50 450 47 HOH HOH . I 6 HOH A 51 451 48 HOH HOH . I 6 HOH A 52 452 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 5 0.894 -20.007 18.944 1 42.13 ? C1 EDO 306 A 1 HETATM 2 O O1 EDO . . . G 5 0.214 -21.084 18.239 1 41.9 ? O1 EDO 306 A 1 HETATM 3 C C2 EDO . . . G 5 -0.055 -18.831 19.287 1 39.92 ? C2 EDO 306 A 1 HETATM 4 O O2 EDO . . . G 5 0.281 -18.11 20.501 1 37.12 ? O2 EDO 306 A 1 HETATM 5 H H11 EDO . . . G 5 1.323 -20.4 19.868 1 50.55 ? H11 EDO 306 A 1 HETATM 6 H H12 EDO . . . G 5 1.713 -19.636 18.324 1 50.55 ? H12 EDO 306 A 1 HETATM 7 H HO1 EDO . . . G 5 0.802 -21.849 18.175 1 50.27 ? HO1 EDO 306 A 1 HETATM 8 H H21 EDO . . . G 5 -0.049 -18.127 18.453 1 47.91 ? H21 EDO 306 A 1 HETATM 9 H H22 EDO . . . G 5 -1.07 -19.223 19.387 1 47.91 ? H22 EDO 306 A 1 HETATM 10 H HO2 EDO . . . G 5 -0.384 -17.427 20.665 1 44.54 ? HO2 EDO 306 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #