data_7UF5
#
_model_server_result.job_id            JyZKQkrrtEVvMykUtvry4g 
_model_server_result.datetime_utc      '2024-11-27 03:23:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7uf5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    7UF5 
#
_exptl.entry_id    7UF5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              230.11 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2-(dihydroxymethyl)-2-hydroxy-3-oxobutyl dihydrogen phosphate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7UF5 
_cell.length_a            60.912 
_cell.length_b            78.99 
_cell.length_c            90.367 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7UF5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    'C 2c 2' 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 45.1835 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 39 A GLU 39 1_555 E MN MN . A MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? 
metalc ? metalc2 A ND1 HIS 154 A HIS 154 1_555 E MN MN . A MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? 
metalc ? metalc3 B O08 N52 . A N52 301 1_555 E MN MN . A MN 304 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.168 ? 
metalc ? metalc4 B O10 N52 . A N52 301 1_555 E MN MN . A MN 304 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.76 ? 
metalc ? metalc5 B O14 N52 . A N52 301 1_555 E MN MN . A MN 304 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.448 ? 
metalc ? metalc6 C O09 N4O . A N4O 302 1_555 E MN MN . A MN 304 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc7 C O11 N4O . A N4O 302 1_555 E MN MN . A MN 304 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.619 ? 
metalc ? metalc8 E MN MN . A MN 304 1_555 F O HOH . A HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? 
#
_chem_comp.formula           'C5 H11 O8 P' 
_chem_comp.formula_weight    230.11 
_chem_comp.id                N52 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2-(dihydroxymethyl)-2-hydroxy-3-oxobutyl dihydrogen phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O08 P06 N52 doub 260 n n 
O07 P06 N52 sing 261 n n 
P06 O09 N52 sing 262 n n 
P06 O05 N52 sing 263 n n 
O12 C11 N52 sing 264 n n 
O10 C03 N52 sing 265 n n 
C03 C11 N52 sing 266 n n 
C03 C04 N52 sing 267 n n 
C03 C02 N52 sing 268 n n 
O05 C04 N52 sing 269 n n 
C11 O13 N52 sing 270 n n 
O14 C02 N52 doub 271 n n 
C02 C01 N52 sing 272 n n 
C01 H012 N52 sing 273 n n 
C01 H013 N52 sing 274 n n 
C01 H011 N52 sing 275 n n 
C04 H041 N52 sing 276 n n 
C04 H042 N52 sing 277 n n 
O07 H1 N52 sing 278 n n 
O09 H2 N52 sing 279 n n 
O10 H101 N52 sing 280 n n 
O12 H121 N52 sing 281 n n 
O13 H131 N52 sing 282 n n 
C11 H111 N52 sing 283 n n 
#
_atom_sites.entry_id                     7UF5 
_atom_sites.fract_transf_matrix[1][1]    0.016417 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01266 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011066 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 N52 A 1 301 1 N52 IN2 . 
C 3 N4O A 1 302 1 N4O DBP . 
D 4 FMT A 1 303 1 FMT FMT . 
E 5 MN A 1 304 1 MN MN . 
F 6 HOH A 1 401 64 HOH HOH . 
F 6 HOH A 2 402 1 HOH HOH . 
F 6 HOH A 3 403 3 HOH HOH . 
F 6 HOH A 4 404 17 HOH HOH . 
F 6 HOH A 5 405 32 HOH HOH . 
F 6 HOH A 6 406 15 HOH HOH . 
F 6 HOH A 7 407 39 HOH HOH . 
F 6 HOH A 8 408 2 HOH HOH . 
F 6 HOH A 9 409 8 HOH HOH . 
F 6 HOH A 10 410 19 HOH HOH . 
F 6 HOH A 11 411 4 HOH HOH . 
F 6 HOH A 12 412 29 HOH HOH . 
F 6 HOH A 13 413 7 HOH HOH . 
F 6 HOH A 14 414 16 HOH HOH . 
F 6 HOH A 15 415 25 HOH HOH . 
F 6 HOH A 16 416 18 HOH HOH . 
F 6 HOH A 17 417 22 HOH HOH . 
F 6 HOH A 18 418 60 HOH HOH . 
F 6 HOH A 19 419 62 HOH HOH . 
F 6 HOH A 20 420 6 HOH HOH . 
F 6 HOH A 21 421 21 HOH HOH . 
F 6 HOH A 22 422 34 HOH HOH . 
F 6 HOH A 23 423 45 HOH HOH . 
F 6 HOH A 24 424 63 HOH HOH . 
F 6 HOH A 25 425 9 HOH HOH . 
F 6 HOH A 26 426 42 HOH HOH . 
F 6 HOH A 27 427 41 HOH HOH . 
F 6 HOH A 28 428 27 HOH HOH . 
F 6 HOH A 29 429 23 HOH HOH . 
F 6 HOH A 30 430 5 HOH HOH . 
F 6 HOH A 31 431 35 HOH HOH . 
F 6 HOH A 32 432 10 HOH HOH . 
F 6 HOH A 33 433 12 HOH HOH . 
F 6 HOH A 34 434 43 HOH HOH . 
F 6 HOH A 35 435 13 HOH HOH . 
F 6 HOH A 36 436 31 HOH HOH . 
F 6 HOH A 37 437 36 HOH HOH . 
F 6 HOH A 38 438 50 HOH HOH . 
F 6 HOH A 39 439 14 HOH HOH . 
F 6 HOH A 40 440 54 HOH HOH . 
F 6 HOH A 41 441 44 HOH HOH . 
F 6 HOH A 42 442 26 HOH HOH . 
F 6 HOH A 43 443 30 HOH HOH . 
F 6 HOH A 44 444 40 HOH HOH . 
F 6 HOH A 45 445 11 HOH HOH . 
F 6 HOH A 46 446 38 HOH HOH . 
F 6 HOH A 47 447 20 HOH HOH . 
F 6 HOH A 48 448 61 HOH HOH . 
F 6 HOH A 49 449 28 HOH HOH . 
F 6 HOH A 50 450 53 HOH HOH . 
F 6 HOH A 51 451 37 HOH HOH . 
F 6 HOH A 52 452 59 HOH HOH . 
F 6 HOH A 53 453 57 HOH HOH . 
F 6 HOH A 54 454 56 HOH HOH . 
F 6 HOH A 55 455 52 HOH HOH . 
F 6 HOH A 56 456 33 HOH HOH . 
F 6 HOH A 57 457 55 HOH HOH . 
F 6 HOH A 58 458 51 HOH HOH . 
F 6 HOH A 59 459 47 HOH HOH . 
F 6 HOH A 60 460 58 HOH HOH . 
F 6 HOH A 61 461 46 HOH HOH . 
F 6 HOH A 62 462 24 HOH HOH . 
F 6 HOH A 63 463 49 HOH HOH . 
F 6 HOH A 64 464 48 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C11 N52 . A . B 2 -2.782 -5.512 12.46 0.56 41.47 ? C11 N52 301 A 1 
HETATM 2 C C01 N52 . A . B 2 -4.692 -6.4 14.545 0.56 43.97 ? C01 N52 301 A 1 
HETATM 3 C C02 N52 . A . B 2 -4.928 -6.414 13.03 0.56 29.19 ? C02 N52 301 A 1 
HETATM 4 C C03 N52 . A . B 2 -4.241 -5.428 12.073 0.56 34.01 ? C03 N52 301 A 1 
HETATM 5 C C04 N52 . A . B 2 -5.11 -4.314 12.617 0.56 39.95 ? C04 N52 301 A 1 
HETATM 6 O O05 N52 . A . B 2 -6.38 -4.562 12.133 0.56 24.47 ? O05 N52 301 A 1 
HETATM 7 O O07 N52 . A . B 2 -5.794 -3.24 9.977 0.56 30.03 ? O07 N52 301 A 1 
HETATM 8 O O08 N52 . A . B 2 -6.969 -5.404 9.788 0.56 27.94 ? O08 N52 301 A 1 
HETATM 9 O O09 N52 . A . B 2 -8.162 -3.466 10.745 0.56 23.6 ? O09 N52 301 A 1 
HETATM 10 O O10 N52 . A . B 2 -4.647 -6.368 11.179 0.56 22.37 ? O10 N52 301 A 1 
HETATM 11 O O12 N52 . A . B 2 -2.477 -5.76 11.116 0.56 7.28 ? O12 N52 301 A 1 
HETATM 12 O O13 N52 . A . B 2 -2.291 -4.357 13.02 0.56 35.43 ? O13 N52 301 A 1 
HETATM 13 O O14 N52 . A . B 2 -5.719 -7.206 12.593 0.56 30.97 ? O14 N52 301 A 1 
HETATM 14 P P06 N52 . A . B 2 -6.818 -4.141 10.616 0.56 30.95 ? P06 N52 301 A 1 
HETATM 15 H H012 N52 . A . B 2 -3.747 -5.931 14.798 0.56 52.77 ? H012 N52 301 A 1 
HETATM 16 H H013 N52 . A . B 2 -4.704 -7.417 14.92 0.56 52.77 ? H013 N52 301 A 1 
HETATM 17 H H011 N52 . A . B 2 -5.495 -5.849 15.025 0.56 52.77 ? H011 N52 301 A 1 
HETATM 18 H H041 N52 . A . B 2 -4.763 -3.374 12.2 0.56 47.95 ? H041 N52 301 A 1 
HETATM 19 H H042 N52 . A . B 2 -5.106 -4.221 13.693 0.56 47.95 ? H042 N52 301 A 1 
HETATM 20 H H101 N52 . A . B 2 -4.553 -6.029 10.303 0.56 26.84 ? H101 N52 301 A 1 
HETATM 21 H H121 N52 . A . B 2 -1.912 -5.077 10.79 0.56 8.74 ? H121 N52 301 A 1 
HETATM 22 H H131 N52 . A . B 2 -2.783 -4.15 13.799 0.56 42.52 ? H131 N52 301 A 1 
HETATM 23 H H111 N52 . A . B 2 -2.574 -6.361 13.081 0.56 49.77 ? H111 N52 301 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           23 
#